RNA polymerase I-specific transcription initiation factor
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G30590 AT1G30590 AT1G30590 AT2G34750 AT2G39240 AT2G39240 |
| fragaria_vesca | FvH4_1g10010 FvH4_1g10010 |
| malus_domestica | MD02G1108900.v1.1 |
| prunus_persica | Prupe.7G186400_v2.0.a1 Prupe.7G186400_v2.0.a1 |
| pyrus_communis | pycom02g08740 pycom15g20300 |
| rosa_chinensis | RchiOBHm_Chr2g0096801 RchiOBHm_Chr2g0096841 |
| rosa_laevigata | RLG00000016671 RLG00000016673 |
| rosa_multiflora | Rmu_co8477279.1_g000001 Rmu_ssc0000215.1_g000029 |
| rosa_roxburghii | Rroxscaffold_2G00145270 Rroxscaffold_2G00145300 |
| rosa_rugosa | Rorug02G0061000 Rorug02G0061300 |
| rosa_samantha | Rh2AG108400 Rh2AG108800 Rh2BG110500 Rh2BG110800 Rh2CG112400 Rh2CG112900 Rh2DG111800 Rh2DG112100 |
| rosa_wichuraiana | Rw2G008380 Rw2G008420 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 562 |
| AccB1I | GGYRCC | 1 cut(s) | 175 |
| AciI | CCGC | 4 cut(s) | 424, 1313, 1496, 1541 |
| AclWI | GGATC | 4 cut(s) | 312, 950, 1592, 1694 |
| AcoI | YGGCCR | 1 cut(s) | 354 |
| AcsI | RAATTY | 5 cut(s) | 222, 297, 917, 1001, 1078 |
| AcuI | CTGAAG | 2 cut(s) | 1194, 1691 |
| AcyI | GRCGYC | 1 cut(s) | 1392 |
| AfaI | GTAC | 3 cut(s) | 128, 552, 1179 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 87, 88, 1318 |
| AflII | CTTAAG | 1 cut(s) | 31 |
| AgsI | TTSAA | 5 cut(s) | 220, 278, 604, 767, 866 |
| AhlI | ACTAGT | 2 cut(s) | 362, 1700 |
| AjnI | CCWGG | 1 cut(s) | 458 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 283, 315 |
| Alw21I | GWGCWC | 4 cut(s) | 383, 468, 950, 1428 |
| Alw26I | GTCTC | 6 cut(s) | 14, 203, 406, 1302, 1390, 1657 |
| Alw44I | GTGCAC | 1 cut(s) | 464 |
| AlwI | GGATC | 4 cut(s) | 312, 950, 1592, 1694 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 931 |
| AoxI | GGCC | 4 cut(s) | 354, 1169, 1206, 1372 |
| ApaLI | GTGCAC | 1 cut(s) | 464 |
| ApeKI | GCWGC | 1 cut(s) | 470 |
| ApoI | RAATTY | 5 cut(s) | 222, 297, 917, 1001, 1078 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 1070, 1102 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 1002 |
| AspS9I | GGNCC | 1 cut(s) | 67 |
| AsuHPI | GGTGA | 4 cut(s) | 161, 251, 673, 1531 |
| AsuII | TTCGAA | 1 cut(s) | 1231 |
| AsuNHI | GCTAGC | 2 cut(s) | 1058, 1103 |
| AvaII | GGWCC | 1 cut(s) | 67 |
| BaeGI | GKGCMC | 1 cut(s) | 468 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 384, 417 |
| BalI | TGGCCA | 1 cut(s) | 356 |
| BanI | GGYRCC | 1 cut(s) | 175 |
| BanII | GRGCYC | 2 cut(s) | 383, 1428 |
| BauI | CACGAG | 3 cut(s) | 1071, 1431, 1707 |
| Bbv12I | GWGCWC | 4 cut(s) | 383, 468, 950, 1428 |
| BbvCI | CCTCAGC | 1 cut(s) | 1316 |
| BbvI | GCAGC | 1 cut(s) | 482 |
| BccI | CCATC | 3 cut(s) | 652, 658, 1702 |
| BciT130I | CCWGG | 1 cut(s) | 460 |
| BciVI | GTATCC | 1 cut(s) | 85 |
| BcoDI | GTCTC | 6 cut(s) | 14, 203, 406, 1302, 1390, 1657 |
| BcuI | ACTAGT | 2 cut(s) | 362, 1700 |
| BfmI | CTRYAG | 1 cut(s) | 1335 |
| BfrI | CTTAAG | 1 cut(s) | 31 |
| BfuAI | ACCTGC | 1 cut(s) | 562 |
| BfuI | GTATCC | 1 cut(s) | 85 |
| BglII | AGATCT | 1 cut(s) | 679 |
| BisI | GCNGC | 1 cut(s) | 471 |
| BlpI | GCTNAGC | 1 cut(s) | 201 |
| BlsI | GCNGC | 1 cut(s) | 472 |
| Bme1390I | CCNGG | 1 cut(s) | 460 |
| Bme18I | GGWCC | 1 cut(s) | 67 |
| BmgT120I | GGNCC | 1 cut(s) | 67 |
| BmiI | GGNNCC | 3 cut(s) | 177, 674, 1254 |
| BmrFI | CCNGG | 1 cut(s) | 460 |
| BmsI | GCATC | 7 cut(s) | 83, 145, 382, 432, 829, 1153, 1665 |
| BmtI | GCTAGC | 2 cut(s) | 1062, 1107 |
| BoxI | GACNNNNGTC | 1 cut(s) | 726 |
| BplI | GAGNNNNNCTC | 6 cut(s) | 198, 230, 602, 634, 1565, 1597 |
| BpmI | CTGGAG | 2 cut(s) | 709, 994 |
| Bpu10I | CCTNAGC | 1 cut(s) | 1316 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 201 |
| Bpu14I | TTCGAA | 1 cut(s) | 1231 |
| BsaAI | YACGTR | 1 cut(s) | 1219 |
| BsaBI | GATNNNNATC | 2 cut(s) | 96, 708 |
| BsaHI | GRCGYC | 1 cut(s) | 1392 |
| BsaJI | CCNNGG | 2 cut(s) | 459, 1460 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 683, 713 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 87, 88, 1318 |
| Bse1I | ACTGG | 3 cut(s) | 357, 726, 984 |
| Bse3DI | GCAATG | 3 cut(s) | 329, 741, 1162 |
| Bse8I | GATNNNNATC | 2 cut(s) | 96, 708 |
| BseBI | CCWGG | 1 cut(s) | 460 |
| BseDI | CCNNGG | 2 cut(s) | 459, 1460 |
| BseGI | GGATG | 3 cut(s) | 859, 1132, 1205 |
| BseJI | GATNNNNATC | 2 cut(s) | 96, 708 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 87, 88, 1318 |
| BseMI | GCAATG | 3 cut(s) | 329, 741, 1162 |
| BseMII | CTCAG | 6 cut(s) | 215, 368, 1307, 1335, 1413, 1656 |
| BseNI | ACTGG | 3 cut(s) | 357, 726, 984 |
| BseRI | GAGGAG | 1 cut(s) | 1589 |
| BseSI | GKGCMC | 1 cut(s) | 468 |
| BseXI | GCAGC | 1 cut(s) | 482 |
| BshFI | GGCC | 4 cut(s) | 356, 1171, 1208, 1374 |
| BshNI | GGYRCC | 1 cut(s) | 175 |
| BsiHKAI | GWGCWC | 4 cut(s) | 383, 468, 950, 1428 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 87, 88, 1318 |
| BsmAI | GTCTC | 6 cut(s) | 14, 203, 406, 1302, 1390, 1657 |
| BsmBI | CGTCTC | 1 cut(s) | 406 |
| BsmI | GAATGC | 1 cut(s) | 1045 |
| BsnI | GGCC | 4 cut(s) | 356, 1171, 1208, 1374 |
| Bsp119I | TTCGAA | 1 cut(s) | 1231 |
| Bsp1286I | GDGCHC | 4 cut(s) | 383, 468, 950, 1428 |
| Bsp1407I | TGTACA | 1 cut(s) | 126 |
| Bsp143I | GATC | 7 cut(s) | 97, 304, 679, 955, 1238, 1597, 1686 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 201 |
| BspACI | CCGC | 4 cut(s) | 424, 1313, 1496, 1541 |
| BspANI | GGCC | 4 cut(s) | 356, 1171, 1208, 1374 |
| BspCNI | CTCAG | 6 cut(s) | 214, 369, 1308, 1336, 1414, 1655 |
| BspLI | GGNNCC | 3 cut(s) | 177, 674, 1254 |
| BspMI | ACCTGC | 1 cut(s) | 562 |
| BspOI | GCTAGC | 2 cut(s) | 1062, 1107 |
| BspPI | GGATC | 4 cut(s) | 312, 950, 1592, 1694 |
| BspQI | GCTCTTC | 1 cut(s) | 480 |
| BspT104I | TTCGAA | 1 cut(s) | 1231 |
| BspT107I | GGYRCC | 1 cut(s) | 175 |
| BspTI | CTTAAG | 1 cut(s) | 31 |
| BsrDI | GCAATG | 3 cut(s) | 329, 741, 1162 |
| BsrGI | TGTACA | 1 cut(s) | 126 |
| BsrI | ACTGG | 3 cut(s) | 357, 726, 984 |
| BssECI | CCNNGG | 2 cut(s) | 459, 1460 |
| BssMI | GATC | 7 cut(s) | 97, 304, 679, 955, 1238, 1597, 1686 |
| BssNI | GRCGYC | 1 cut(s) | 1392 |
| BssSI | CACGAG | 3 cut(s) | 1071, 1431, 1707 |
| Bst2BI | CACGAG | 3 cut(s) | 1071, 1431, 1707 |
| Bst2UI | CCWGG | 1 cut(s) | 460 |
| Bst4CI | ACNGT | 3 cut(s) | 927, 1512, 1552 |
| Bst6I | CTCTTC | 2 cut(s) | 480, 878 |
| BstACI | GRCGYC | 1 cut(s) | 1392 |
| BstAFI | CTTAAG | 1 cut(s) | 31 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 1152 |
| BstAUI | TGTACA | 1 cut(s) | 126 |
| BstBAI | YACGTR | 1 cut(s) | 1219 |
| BstBI | TTCGAA | 1 cut(s) | 1231 |
| BstC8I | GCNNGC | 8 cut(s) | 244, 468, 565, 569, 946, 1060, 1105, 1539 |
| BstDEI | CTNAG | 7 cut(s) | 201, 247, 377, 1316, 1344, 1422, 1642 |
| BstDSI | CCRYGG | 1 cut(s) | 1460 |
| BstF5I | GGATG | 3 cut(s) | 859, 1132, 1205 |
| BstKTI | GATC | 7 cut(s) | 100, 307, 682, 958, 1241, 1600, 1689 |
| BstMAI | GTCTC | 6 cut(s) | 14, 203, 406, 1302, 1390, 1657 |
| BstMBI | GATC | 7 cut(s) | 97, 304, 679, 955, 1238, 1597, 1686 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 175, 1152 |
| BstNI | CCWGG | 1 cut(s) | 460 |
| BstNSI | RCATGY | 2 cut(s) | 1111, 1155 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 726 |
| BstSCI | CCNGG | 1 cut(s) | 458 |
| BstSFI | CTRYAG | 1 cut(s) | 1335 |
| BstSLI | GKGCMC | 1 cut(s) | 468 |
| BstV1I | GCAGC | 1 cut(s) | 482 |
| BstX2I | RGATCY | 2 cut(s) | 679, 955 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 1461 |
| BstYI | RGATCY | 2 cut(s) | 679, 955 |
| BsuI | GTATCC | 1 cut(s) | 85 |
| BsuRI | GGCC | 4 cut(s) | 356, 1171, 1208, 1374 |
| BtgI | CCRYGG | 1 cut(s) | 1460 |
| BtgZI | GCGATG | 1 cut(s) | 717 |
| BtsCI | GGATG | 3 cut(s) | 859, 1132, 1205 |
| BtsI | GCAGTG | 1 cut(s) | 1050 |
| BtsIMutI | CAGTG | 3 cut(s) | 350, 1050, 1557 |
| BveI | ACCTGC | 1 cut(s) | 562 |
| Cac8I | GCNNGC | 8 cut(s) | 244, 468, 565, 569, 946, 1060, 1105, 1539 |
| CaiI | CAGNNNCTG | 1 cut(s) | 931 |
| Cfr13I | GGNCC | 1 cut(s) | 67 |
| CseI | GACGC | 1 cut(s) | 1400 |
| Csp6I | GTAC | 3 cut(s) | 127, 551, 1178 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 1351, 1386 |
| CviAII | CATG | 3 cut(s) | 1108, 1152, 1648 |
| CviQI | GTAC | 3 cut(s) | 127, 551, 1178 |
| DdeI | CTNAG | 7 cut(s) | 201, 247, 377, 1316, 1344, 1422, 1642 |
| DpnI | GATC | 7 cut(s) | 99, 306, 681, 957, 1240, 1599, 1688 |
| DpnII | GATC | 7 cut(s) | 97, 304, 679, 955, 1238, 1597, 1686 |
| EaeI | YGGCCR | 1 cut(s) | 354 |
| Eam1104I | CTCTTC | 2 cut(s) | 480, 878 |
| EarI | CTCTTC | 2 cut(s) | 480, 878 |
| Ecl136II | GAGCTC | 2 cut(s) | 381, 1426 |
| Eco147I | AGGCCT | 1 cut(s) | 1171 |
| Eco24I | GRGCYC | 2 cut(s) | 383, 1428 |
| Eco47I | GGWCC | 1 cut(s) | 67 |
| Eco53kI | GAGCTC | 2 cut(s) | 381, 1426 |
| Eco57I | CTGAAG | 2 cut(s) | 1194, 1691 |
| EcoICRI | GAGCTC | 2 cut(s) | 381, 1426 |
| EcoO109I | RGGNCCY | 1 cut(s) | 67 |
| EcoRII | CCWGG | 1 cut(s) | 458 |
| EcoT22I | ATGCAT | 1 cut(s) | 331 |
| EcoT38I | GRGCYC | 2 cut(s) | 383, 1428 |
| Esp3I | CGTCTC | 1 cut(s) | 406 |
| FaeI | CATG | 3 cut(s) | 1111, 1155, 1651 |
| FatI | CATG | 3 cut(s) | 1107, 1151, 1647 |
| FauI | CCCGC | 2 cut(s) | 431, 1320 |
| FauNDI | CATATG | 1 cut(s) | 586 |
| Fnu4HI | GCNGC | 1 cut(s) | 471 |
| FokI | GGATG | 3 cut(s) | 866, 1139, 1212 |
| FriOI | GRGCYC | 2 cut(s) | 383, 1428 |
| Fsp4HI | GCNGC | 1 cut(s) | 471 |
| GluI | GCNGC | 1 cut(s) | 471 |
| GsuI | CTGGAG | 2 cut(s) | 709, 994 |
| HaeIII | GGCC | 4 cut(s) | 356, 1171, 1208, 1374 |
| HgaI | GACGC | 1 cut(s) | 1400 |
| Hin1I | GRCGYC | 1 cut(s) | 1392 |
| Hin1II | CATG | 3 cut(s) | 1111, 1155, 1651 |
| HindIII | AAGCTT | 1 cut(s) | 42 |
| HinfI | GANTC | 9 cut(s) | 686, 722, 809, 878, 1286, 1418, 1580, 1665, 1712 |
| HphI | GGTGA | 4 cut(s) | 161, 251, 673, 1531 |
| Hpy166II | GTNNAC | 4 cut(s) | 259, 466, 553, 1180 |
| Hpy8I | GTNNAC | 4 cut(s) | 259, 466, 553, 1180 |
| Hpy99I | CGWCG | 1 cut(s) | 1394 |
| HpyAV | CCTTC | 4 cut(s) | 281, 761, 1405, 1689 |
| HpyCH4III | ACNGT | 3 cut(s) | 927, 1512, 1552 |
| HpyCH4IV | ACGT | 5 cut(s) | 255, 412, 756, 1218, 1593 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 175, 1152 |
| HpyF3I | CTNAG | 7 cut(s) | 201, 247, 377, 1316, 1344, 1422, 1642 |
| HpySE526I | ACGT | 5 cut(s) | 255, 412, 756, 1218, 1593 |
| Hsp92I | GRCGYC | 1 cut(s) | 1392 |
| Hsp92II | CATG | 3 cut(s) | 1111, 1155, 1651 |
| Kzo9I | GATC | 7 cut(s) | 97, 304, 679, 955, 1238, 1597, 1686 |
| LguI | GCTCTTC | 1 cut(s) | 480 |
| LmnI | GCTCC | 2 cut(s) | 5, 511 |
| Lsp1109I | GCAGC | 1 cut(s) | 482 |
| LweI | GCATC | 7 cut(s) | 83, 145, 382, 432, 829, 1153, 1665 |
| MaeII | ACGT | 5 cut(s) | 255, 412, 756, 1218, 1593 |
| MaeIII | GTNAC | 4 cut(s) | 149, 1027, 1045, 1546 |
| MalI | GATC | 7 cut(s) | 99, 306, 681, 957, 1240, 1599, 1688 |
| MboI | GATC | 7 cut(s) | 97, 304, 679, 955, 1238, 1597, 1686 |
| MboII | GAAGA | 8 cut(s) | 23, 151, 266, 467, 604, 865, 1441, 1684 |
| MflI | RGATCY | 2 cut(s) | 679, 955 |
| MhlI | GDGCHC | 4 cut(s) | 383, 468, 950, 1428 |
| MlsI | TGGCCA | 1 cut(s) | 356 |
| MluNI | TGGCCA | 1 cut(s) | 356 |
| MlyI | GAGTC | 6 cut(s) | 716, 887, 1295, 1427, 1574, 1659 |
| MmeI | TCCRAC | 5 cut(s) | 588, 771, 975, 1413, 1449 |
| Mox20I | TGGCCA | 1 cut(s) | 356 |
| Mph1103I | ATGCAT | 1 cut(s) | 331 |
| MroXI | GAANNNNTTC | 1 cut(s) | 1002 |
| MscI | TGGCCA | 1 cut(s) | 356 |
| MslI | CAYNNNNRTG | 1 cut(s) | 1459 |
| Msp20I | TGGCCA | 1 cut(s) | 356 |
| MspA1I | CMGCKG | 1 cut(s) | 1315 |
| MspCI | CTTAAG | 1 cut(s) | 31 |
| MspR9I | CCNGG | 1 cut(s) | 460 |
| Mva1269I | GAATGC | 1 cut(s) | 1045 |
| MvaI | CCWGG | 1 cut(s) | 460 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 175, 1152 |
| NdeI | CATATG | 1 cut(s) | 586 |
| NdeII | GATC | 7 cut(s) | 97, 304, 679, 955, 1238, 1597, 1686 |
| NheI | GCTAGC | 2 cut(s) | 1058, 1103 |
| NlaIII | CATG | 3 cut(s) | 1111, 1155, 1651 |
| NlaIV | GGNNCC | 3 cut(s) | 177, 674, 1254 |
| NmuCI | GTSAC | 3 cut(s) | 149, 1045, 1546 |
| NsiI | ATGCAT | 1 cut(s) | 331 |
| NspI | RCATGY | 2 cut(s) | 1111, 1155 |
| NspV | TTCGAA | 1 cut(s) | 1231 |
| PceI | AGGCCT | 1 cut(s) | 1171 |
| PciSI | GCTCTTC | 1 cut(s) | 480 |
| PctI | GAATGC | 1 cut(s) | 1045 |
| PdmI | GAANNNNTTC | 1 cut(s) | 1002 |
| PfeI | GAWTC | 3 cut(s) | 686, 809, 1712 |
| PkrI | GCNGC | 1 cut(s) | 472 |
| PleI | GAGTC | 6 cut(s) | 716, 886, 1294, 1426, 1574, 1659 |
| PpsI | GAGTC | 6 cut(s) | 716, 886, 1294, 1426, 1574, 1659 |
| Ppu21I | YACGTR | 1 cut(s) | 1219 |
| PpuMI | RGGWCCY | 1 cut(s) | 67 |
| PshAI | GACNNNNGTC | 1 cut(s) | 726 |
| Psp124BI | GAGCTC | 2 cut(s) | 383, 1428 |
| Psp5II | RGGWCCY | 1 cut(s) | 67 |
| Psp6I | CCWGG | 1 cut(s) | 458 |
| PspGI | CCWGG | 1 cut(s) | 458 |
| PspN4I | GGNNCC | 3 cut(s) | 177, 674, 1254 |
| PspPI | GGNCC | 1 cut(s) | 67 |
| PspPPI | RGGWCCY | 1 cut(s) | 67 |
| PstNI | CAGNNNCTG | 1 cut(s) | 931 |
| PsuI | RGATCY | 2 cut(s) | 679, 955 |
| RsaI | GTAC | 3 cut(s) | 128, 552, 1179 |
| RsaNI | GTAC | 3 cut(s) | 127, 551, 1178 |
| RseI | CAYNNNNRTG | 1 cut(s) | 1459 |
| SacI | GAGCTC | 2 cut(s) | 383, 1428 |
| SapI | GCTCTTC | 1 cut(s) | 480 |
| SatI | GCNGC | 1 cut(s) | 471 |
| Sau3AI | GATC | 7 cut(s) | 97, 304, 679, 955, 1238, 1597, 1686 |
| Sau96I | GGNCC | 1 cut(s) | 67 |
| SchI | GAGTC | 6 cut(s) | 716, 887, 1295, 1427, 1574, 1659 |
| ScrFI | CCNGG | 1 cut(s) | 460 |
| SduI | GDGCHC | 4 cut(s) | 383, 468, 950, 1428 |
| SfaNI | GCATC | 7 cut(s) | 83, 145, 382, 432, 829, 1153, 1665 |
| SfcI | CTRYAG | 1 cut(s) | 1335 |
| SfuI | TTCGAA | 1 cut(s) | 1231 |
| SinI | GGWCC | 1 cut(s) | 67 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 1459 |
| SmlI | CTYRAG | 1 cut(s) | 31 |
| SmoI | CTYRAG | 1 cut(s) | 31 |
| SpeI | ACTAGT | 2 cut(s) | 362, 1700 |
| SseBI | AGGCCT | 1 cut(s) | 1171 |
| SsiI | CCGC | 4 cut(s) | 424, 1313, 1496, 1541 |
| SstI | GAGCTC | 2 cut(s) | 383, 1428 |
| StuI | AGGCCT | 1 cut(s) | 1171 |
| StyD4I | CCNGG | 1 cut(s) | 458 |
| TaaI | ACNGT | 3 cut(s) | 927, 1512, 1552 |
| TaiI | ACGT | 5 cut(s) | 258, 415, 759, 1221, 1596 |
| TaqI | TCGA | 7 cut(s) | 189, 432, 684, 807, 876, 1231, 1682 |
| TatI | WGTACW | 2 cut(s) | 126, 1177 |
| TfiI | GAWTC | 3 cut(s) | 686, 809, 1712 |
| TscAI | CASTG | 3 cut(s) | 357, 1050, 1557 |
| TseFI | GTSAC | 3 cut(s) | 149, 1045, 1546 |
| TseI | GCWGC | 1 cut(s) | 470 |
| Tsp45I | GTSAC | 3 cut(s) | 149, 1045, 1546 |
| TspDTI | ATGAA | 5 cut(s) | 1320, 1369, 1387, 1492, 1628 |
| TspRI | CASTG | 3 cut(s) | 357, 1050, 1557 |
| Vha464I | CTTAAG | 1 cut(s) | 31 |
| VneI | GTGCAC | 1 cut(s) | 464 |
| VpaK11BI | GGWCC | 1 cut(s) | 67 |
| XapI | RAATTY | 5 cut(s) | 222, 297, 917, 1001, 1078 |
| XceI | RCATGY | 2 cut(s) | 1111, 1155 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 991 |
| XmnI | GAANNNNTTC | 1 cut(s) | 1002 |
| Zsp2I | ATGCAT | 1 cut(s) | 331 |