RLG00000016673

RNA polymerase I-specific transcription initiation factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0004110
Physical Location & Seq
Reverse (-)
8839824 .. 8846584
6761 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000016673

Sequence Viewer

Length: 1602 bp
ATGGACCTAGCTCTGCACGTCAAGGACGTTCTCGTTTCGTTCTCATCTGCAGATGTTGAATCTTTTGAAAACTACCGGAACCTGGTTGCGGTTCTGCACAGGAAGAAAAACCTCTCCCCTAAAGACGTAGCTGAGCTCGTGGCAATTTTGAAAGGACTATCAGGCGCAGCTGCTTATATTGACAGTGCTCATTGCGACCTTTACTCTGCAATTTTTAACATAAGCCTGTGGAACTATGGGCCGGAGGTGATGGATGCATTGATTGAATTGATTATTGCTTTGGCCACTTCAAGTGGGAAGTATCTTGATATATGCTTGGAGATGCTCGTATCCAATTTTGTGTCTCAGGATCCTTATATGCTGGATAAGTTGAAGGTGCCACATGGGCTTAAAAAGAAGGATCAAGTTTTAACTCGTGTCCACAGAGCTCTGAAAGTTATCTCTGATTTGTCACCTCTTTCCCCTAGAAATTTGCTGATACTAGTTTACCGTGGTCTAAATGGATATTATACCAGAAAAGGAACTAGTACTCTTGCTCTTGAGTTATACGTAGAGAACATGCTAAAATTTGGATCAGTTGGAAATTGTATCATTGAAGAAATCTCACAAGATCATGGACTATTTCAGATGGAGCTGGAACATCTTTATCTGAATGATGGTAGTGAGCTTCCCAGAGAAGACATTAAAAATGAAGTCACTCGGAAGAGTTGTGCTGAAAAATTAGATAACTTGATGGTCTTAACTTTTGAGCATCTTGAATCATGTGAAAGTGGTGGCCGATTGGTTGAGGTATTTGAAACTCTGCTCAAGTCATTTAAGAAGAATGTAACGACCGCATTCAAGTCAAAATTTGTCCAGTTTGTGATGTTCTATGCATGTGAACTTGATCCTGTCAACTGTGGTGAGAGGTTTGCTTCCACGCTTGCAGAAATTTTAATATTCGCCCTCCGAACTCACACGATGAGTGCTATTGCTTATCTTGCTAGCTATCTGTCTTGTGCGAAGTTTATTTTGGTGGATTGGTGTAACGAATATGTCGAAGAGCAAGATGGTAAAATAAACCCAGAAACCCATGGAATATTTTATTCTACATGCCAGGCCATCATTTATTTGCTGTGCTTCCGAATGAGATCAATGATGGATGATCCGCAGTTGAAGTCATTCCATGCTGGCCTTCCTTTAGAGTCTATCTTGAGCATTAAATTTAGCCTGCTGAAGGCATGTCTGCCTTCCATAGTGAAGGAGTTTCTAGGGCAAGATGCTCTGGAATCAGAATATTCATGGGCGTGGGGTGGGAAGGAAGAGCTTCACAAGTTCTTCCCATTTGCCCCATCTCTGCTGATAAAAAGTGACAGATTCATCCGGCAGAATTTCATTTACTGGGACATGGTTCAACATACTGATGAAGCAGATGAAGAAATTTCCAGCTATGAAGATGTTGGTGAAGCCTTTGTGTGTGAAAATGAGGAGAATGAAATGGATTGTGAGGTTTTGCAGAGCTTGGAGGAACAACATTTTGGTGTTAATGAGGATTCCGTACACCAACCTGTGCGAATGCCCTTGAGAATCAGACCGTCCATGAGTCCGGAGCCTGTATATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RRN3

Protein Analysis

534

Amino Acids

60.65

Weight (kDa)

5.0

Isoelectric Point (pI)

40.72

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RRN3 PF05327 14 - 194 5.7e-22 RNA polymerase I specific transcription initiation factor RRN3
RRN3 PF05327 229 - 418 2.2e-44 RNA polymerase I specific transcription initiation factor RRN3
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 376
AccIII TCCGGA 1 cut(s) 1585
AciI CCGC 3 cut(s) 89, 834, 1148
AclWI GGATC 6 cut(s) 344, 357, 408, 580, 881, 1139
AcoI YGGCCR 2 cut(s) 282, 775
AcsI RAATTY 7 cut(s) 469, 566, 848, 930, 1202, 1369, 1419
AcuI CTGAAG 1 cut(s) 1235
AfaI GTAC 2 cut(s) 529, 1539
AfiI CCNNNNNNNGG 3 cut(s) 82, 88, 1216
AhlI ACTAGT 2 cut(s) 481, 524
AjiI CACGTC 1 cut(s) 19
AjnI CCWGG 2 cut(s) 81, 1095
AjuI GAANNNNNNNTTGG 4 cut(s) 995, 1027, 1500, 1532
Alw21I GWGCWC 3 cut(s) 138, 190, 430
Alw26I GTCTC 1 cut(s) 348
AlwI GGATC 6 cut(s) 344, 357, 408, 580, 881, 1139
Aor13HI TCCGGA 1 cut(s) 1585
AoxI GGCC 5 cut(s) 239, 282, 775, 1098, 1171
ApeKI GCWGC 2 cut(s) 167, 170
ApoI RAATTY 7 cut(s) 469, 566, 848, 930, 1202, 1369, 1419
Asp700I GAANNNNTTC 2 cut(s) 1160, 1305
AspLEI GCGC 1 cut(s) 167
AspS9I GGNCC 2 cut(s) 4, 239
AsuHPI GGTGA 4 cut(s) 259, 444, 914, 1454
AsuNHI GCTAGC 1 cut(s) 983
AvaII GGWCC 1 cut(s) 4
BalI TGGCCA 1 cut(s) 284
BamHI GGATCC 1 cut(s) 349
BanI GGYRCC 1 cut(s) 376
BanII GRGCYC 2 cut(s) 138, 430
BauI CACGAG 2 cut(s) 137, 414
BbsI GAAGAC 1 cut(s) 684
Bbv12I GWGCWC 3 cut(s) 138, 190, 430
BbvI GCAGC 2 cut(s) 157, 179
BccI CCATC 8 cut(s) 244, 622, 650, 727, 1043, 1109, 1132, 1339
BciT130I CCWGG 2 cut(s) 83, 1097
BciVI GTATCC 1 cut(s) 340
BcoDI GTCTC 1 cut(s) 348
BcuI ACTAGT 2 cut(s) 481, 524
BfaI CTAG 6 cut(s) 8, 465, 482, 525, 984, 1250
BfmI CTRYAG 1 cut(s) 48
BfuI GTATCC 1 cut(s) 340
BglI GCCNNNNNGGC 1 cut(s) 385
BisI GCNGC 2 cut(s) 168, 171
BlpI GCTNAGC 1 cut(s) 132
BlsI GCNGC 2 cut(s) 169, 172
BmcAI AGTACT 1 cut(s) 529
Bme1390I CCNGG 2 cut(s) 83, 1097
Bme18I GGWCC 1 cut(s) 4
BmgBI CACGTC 1 cut(s) 19
BmgT120I GGNCC 2 cut(s) 4, 239
BmiI GGNNCC 4 cut(s) 80, 351, 378, 1590
BmrFI CCNGG 2 cut(s) 83, 1097
BmrI ACTGGG 1 cut(s) 1390
BmsI GCATC 4 cut(s) 244, 312, 760, 1249
BmtI GCTAGC 1 cut(s) 987
BmuI ACTGGG 1 cut(s) 1390
BpiI GAAGAC 1 cut(s) 684
Bpu1102I GCTNAGC 1 cut(s) 132
BpuEI CTTGAG 4 cut(s) 560, 791, 1213, 1582
BsaAI YACGTR 1 cut(s) 550
BsaJI CCNNGG 2 cut(s) 490, 1072
BsaWI WCCGGW 2 cut(s) 75, 1585
Bsc4I CCNNNNNNNGG 3 cut(s) 82, 88, 1216
Bse1I ACTGG 2 cut(s) 856, 1385
Bse3DI GCAATG 1 cut(s) 190
BseAI TCCGGA 1 cut(s) 1585
BseBI CCWGG 2 cut(s) 83, 1097
BseDI CCNNGG 2 cut(s) 490, 1072
BseGI GGATG 3 cut(s) 259, 1147, 1359
BseLI CCNNNNNNNGG 3 cut(s) 82, 88, 1216
BseMI GCAATG 1 cut(s) 190
BseMII CTCAG 2 cut(s) 123, 359
BseNI ACTGG 2 cut(s) 856, 1385
BseRI GAGGAG 1 cut(s) 1481
BseXI GCAGC 2 cut(s) 157, 179
BsgI GTGCAG 1 cut(s) 80
Bsh1285I CGRYCG 1 cut(s) 834
BshFI GGCC 5 cut(s) 241, 284, 777, 1100, 1173
BshNI GGYRCC 1 cut(s) 376
BsiEI CGRYCG 1 cut(s) 834
BsiHKAI GWGCWC 3 cut(s) 138, 190, 430
BsiSI CCGG 4 cut(s) 76, 242, 1363, 1586
BslFI GGGAC 1 cut(s) 1397
BslI CCNNNNNNNGG 3 cut(s) 82, 88, 1216
BsmAI GTCTC 1 cut(s) 348
BsmFI GGGAC 1 cut(s) 1397
BsmI GAATGC 2 cut(s) 836, 1560
BsnI GGCC 5 cut(s) 241, 284, 777, 1100, 1173
Bsp1286I GDGCHC 3 cut(s) 138, 190, 430
Bsp13I TCCGGA 1 cut(s) 1585
Bsp143I GATC 7 cut(s) 349, 400, 572, 610, 886, 1130, 1144
Bsp1720I GCTNAGC 1 cut(s) 132
Bsp19I CCATGG 1 cut(s) 1072
BspACI CCGC 3 cut(s) 89, 834, 1148
BspANI GGCC 5 cut(s) 241, 284, 777, 1100, 1173
BspCNI CTCAG 2 cut(s) 124, 358
BspEI TCCGGA 1 cut(s) 1585
BspLI GGNNCC 4 cut(s) 80, 351, 378, 1590
BspMAI CTGCAG 1 cut(s) 52
BspOI GCTAGC 1 cut(s) 987
BspPI GGATC 6 cut(s) 344, 357, 408, 580, 881, 1139
BspQI GCTCTTC 2 cut(s) 1035, 1296
BspT107I GGYRCC 1 cut(s) 376
BsrDI GCAATG 1 cut(s) 190
BsrI ACTGG 2 cut(s) 856, 1385
BssECI CCNNGG 2 cut(s) 490, 1072
BssMI GATC 7 cut(s) 349, 400, 572, 610, 886, 1130, 1144
BssSI CACGAG 2 cut(s) 137, 414
BssT1I CCWWGG 1 cut(s) 1072
Bst2BI CACGAG 2 cut(s) 137, 414
Bst2UI CCWGG 2 cut(s) 83, 1097
Bst4CI ACNGT 4 cut(s) 185, 491, 899, 1575
Bst6I CTCTTC 3 cut(s) 698, 1035, 1296
BstBAI YACGTR 1 cut(s) 550
BstC8I GCNNGC 4 cut(s) 924, 985, 1171, 1211
BstDEI CTNAG 2 cut(s) 132, 345
BstDSI CCRYGG 2 cut(s) 490, 1072
BstENI CCTNNNNNAGG 1 cut(s) 1214
BstF5I GGATG 3 cut(s) 259, 1147, 1359
BstHHI GCGC 1 cut(s) 167
BstKTI GATC 7 cut(s) 352, 403, 575, 613, 889, 1133, 1147
BstMAI GTCTC 1 cut(s) 348
BstMBI GATC 7 cut(s) 349, 400, 572, 610, 886, 1130, 1144
BstMCI CGRYCG 1 cut(s) 834
BstMWI GCNNNNNNNGC 2 cut(s) 385, 980
BstNI CCWGG 2 cut(s) 83, 1097
BstNSI RCATGY 4 cut(s) 562, 879, 1095, 1224
BstSCI CCNGG 2 cut(s) 81, 1095
BstSFI CTRYAG 1 cut(s) 48
BstSNI TACGTA 1 cut(s) 550
BstV1I GCAGC 2 cut(s) 157, 179
BstV2I GAAGAC 1 cut(s) 684
BstX2I RGATCY 1 cut(s) 349
BstYI RGATCY 1 cut(s) 349
BsuI GTATCC 1 cut(s) 340
BsuRI GGCC 5 cut(s) 241, 284, 777, 1100, 1173
BtgI CCRYGG 2 cut(s) 490, 1072
BtrI CACGTC 1 cut(s) 19
BtsCI GGATG 3 cut(s) 259, 1147, 1359
BtsIMutI CAGTG 1 cut(s) 190
Cac8I GCNNGC 4 cut(s) 924, 985, 1171, 1211
CfoI GCGC 1 cut(s) 167
Cfr13I GGNCC 2 cut(s) 4, 239
CsiI ACCWGGT 1 cut(s) 81
Csp6I GTAC 2 cut(s) 528, 1538
CviQI GTAC 2 cut(s) 528, 1538
DdeI CTNAG 2 cut(s) 132, 345
DpnI GATC 7 cut(s) 351, 402, 574, 612, 888, 1132, 1146
DpnII GATC 7 cut(s) 349, 400, 572, 610, 886, 1130, 1144
EaeI YGGCCR 2 cut(s) 282, 775
Eam1104I CTCTTC 3 cut(s) 698, 1035, 1296
EarI CTCTTC 3 cut(s) 698, 1035, 1296
Ecl136II GAGCTC 2 cut(s) 136, 428
Eco105I TACGTA 1 cut(s) 550
Eco130I CCWWGG 1 cut(s) 1072
Eco24I GRGCYC 2 cut(s) 138, 430
Eco47I GGWCC 1 cut(s) 4
Eco53kI GAGCTC 2 cut(s) 136, 428
Eco57I CTGAAG 1 cut(s) 1235
EcoICRI GAGCTC 2 cut(s) 136, 428
EcoNI CCTNNNNNAGG 1 cut(s) 1214
EcoRII CCWGG 2 cut(s) 81, 1095
EcoT14I CCWWGG 1 cut(s) 1072
EcoT22I ATGCAT 2 cut(s) 259, 877
EcoT38I GRGCYC 2 cut(s) 138, 430
ErhI CCWWGG 1 cut(s) 1072
FaqI GGGAC 1 cut(s) 1397
Fnu4HI GCNGC 2 cut(s) 168, 171
FokI GGATG 3 cut(s) 266, 1154, 1346
FriOI GRGCYC 2 cut(s) 138, 430
Fsp4HI GCNGC 2 cut(s) 168, 171
FspBI CTAG 6 cut(s) 8, 465, 482, 525, 984, 1250
GlaI GCGC 1 cut(s) 166
GluI GCNGC 2 cut(s) 168, 171
HaeIII GGCC 5 cut(s) 241, 284, 777, 1100, 1173
HapII CCGG 4 cut(s) 76, 242, 1363, 1586
HhaI GCGC 1 cut(s) 167
Hin6I GCGC 1 cut(s) 165
HinP1I GCGC 1 cut(s) 165
HincII GTYRAC 1 cut(s) 895
HindII GTYRAC 1 cut(s) 895
HinfI GANTC 8 cut(s) 59, 758, 1184, 1268, 1356, 1532, 1566, 1582
HpaII CCGG 4 cut(s) 76, 242, 1363, 1586
HphI GGTGA 4 cut(s) 259, 444, 914, 1454
Hpy166II GTNNAC 5 cut(s) 421, 487, 881, 895, 1540
Hpy188I TCNGA 9 cut(s) 432, 445, 627, 651, 702, 950, 1124, 1273, 1571
Hpy188III TCNNGA 7 cut(s) 305, 347, 539, 755, 1192, 1265, 1586
Hpy8I GTNNAC 5 cut(s) 421, 487, 881, 895, 1540
HpyAV CCTTC 7 cut(s) 367, 391, 1184, 1210, 1234, 1239, 1291
HpyCH4III ACNGT 4 cut(s) 185, 491, 899, 1575
HpyCH4IV ACGT 4 cut(s) 18, 27, 126, 549
HpyCH4V TGCA 8 cut(s) 16, 50, 97, 209, 257, 875, 926, 1495
HpyF10VI GCNNNNNNNGC 2 cut(s) 385, 980
HpyF3I CTNAG 2 cut(s) 132, 345
HpySE526I ACGT 4 cut(s) 18, 27, 126, 549
HspAI GCGC 1 cut(s) 165
Kpn2I TCCGGA 1 cut(s) 1585
Kzo9I GATC 7 cut(s) 349, 400, 572, 610, 886, 1130, 1144
LguI GCTCTTC 2 cut(s) 1035, 1296
LmnI GCTCC 2 cut(s) 631, 1588
Lsp1109I GCAGC 2 cut(s) 157, 179
LweI GCATC 4 cut(s) 244, 312, 760, 1249
MabI ACCWGGT 1 cut(s) 81
MaeI CTAG 6 cut(s) 8, 465, 482, 525, 984, 1250
MaeII ACGT 4 cut(s) 18, 27, 126, 549
MaeIII GTNAC 5 cut(s) 450, 694, 826, 1025, 1349
MalI GATC 7 cut(s) 351, 402, 574, 612, 888, 1132, 1146
MboI GATC 7 cut(s) 349, 400, 572, 610, 886, 1130, 1144
MflI RGATCY 1 cut(s) 349
MhlI GDGCHC 3 cut(s) 138, 190, 430
MlsI TGGCCA 1 cut(s) 284
MluNI TGGCCA 1 cut(s) 284
MlyI GAGTC 2 cut(s) 1193, 1591
MmeI TCCRAC 1 cut(s) 559
Mox20I TGGCCA 1 cut(s) 284
Mph1103I ATGCAT 2 cut(s) 259, 877
MroI TCCGGA 1 cut(s) 1585
MroXI GAANNNNTTC 2 cut(s) 1160, 1305
MscI TGGCCA 1 cut(s) 284
MseI TTAA 9 cut(s) 216, 390, 410, 684, 740, 816, 935, 1200, 1524
MslI CAYNNNNRTG 3 cut(s) 1285, 1401, 1518
Msp20I TGGCCA 1 cut(s) 284
MspA1I CMGCKG 1 cut(s) 170
MspI CCGG 4 cut(s) 76, 242, 1363, 1586
MspR9I CCNGG 2 cut(s) 83, 1097
Mva1269I GAATGC 2 cut(s) 836, 1560
MvaI CCWGG 2 cut(s) 83, 1097
MwoI GCNNNNNNNGC 2 cut(s) 385, 980
NcoI CCATGG 1 cut(s) 1072
NdeII GATC 7 cut(s) 349, 400, 572, 610, 886, 1130, 1144
NheI GCTAGC 1 cut(s) 983
NlaIV GGNNCC 4 cut(s) 80, 351, 378, 1590
NmuCI GTSAC 3 cut(s) 450, 694, 1349
NsiI ATGCAT 2 cut(s) 259, 877
NspI RCATGY 4 cut(s) 562, 879, 1095, 1224
PciSI GCTCTTC 2 cut(s) 1035, 1296
PcsI WCGNNNNNNNCGW 2 cut(s) 24, 1035
PctI GAATGC 2 cut(s) 836, 1560
PdmI GAANNNNTTC 2 cut(s) 1160, 1305
PfeI GAWTC 6 cut(s) 59, 758, 1268, 1356, 1532, 1566
PkrI GCNGC 2 cut(s) 169, 172
PleI GAGTC 2 cut(s) 1192, 1590
PpsI GAGTC 2 cut(s) 1192, 1590
Ppu21I YACGTR 1 cut(s) 550
Psp124BI GAGCTC 2 cut(s) 138, 430
Psp6I CCWGG 2 cut(s) 81, 1095
PspGI CCWGG 2 cut(s) 81, 1095
PspN4I GGNNCC 4 cut(s) 80, 351, 378, 1590
PspPI GGNCC 2 cut(s) 4, 239
PstI CTGCAG 1 cut(s) 52
PsuI RGATCY 1 cut(s) 349
PvuII CAGCTG 1 cut(s) 170
RsaI GTAC 2 cut(s) 529, 1539
RsaNI GTAC 2 cut(s) 528, 1538
RseI CAYNNNNRTG 3 cut(s) 1285, 1401, 1518
SacI GAGCTC 2 cut(s) 138, 430
SapI GCTCTTC 2 cut(s) 1035, 1296
SaqAI TTAA 9 cut(s) 216, 390, 410, 684, 740, 816, 935, 1200, 1524
SatI GCNGC 2 cut(s) 168, 171
Sau3AI GATC 7 cut(s) 349, 400, 572, 610, 886, 1130, 1144
Sau96I GGNCC 2 cut(s) 4, 239
ScaI AGTACT 1 cut(s) 529
SchI GAGTC 2 cut(s) 1193, 1591
ScrFI CCNGG 2 cut(s) 83, 1097
SduI GDGCHC 3 cut(s) 138, 190, 430
SexAI ACCWGGT 1 cut(s) 81
SfaNI GCATC 4 cut(s) 244, 312, 760, 1249
SfcI CTRYAG 1 cut(s) 48
SinI GGWCC 1 cut(s) 4
SmiMI CAYNNNNRTG 3 cut(s) 1285, 1401, 1518
SmlI CTYRAG 4 cut(s) 539, 806, 1192, 1561
SmoI CTYRAG 4 cut(s) 539, 806, 1192, 1561
SnaBI TACGTA 1 cut(s) 550
SpeI ACTAGT 2 cut(s) 481, 524
SsiI CCGC 3 cut(s) 89, 834, 1148
SspI AATATT 3 cut(s) 939, 1080, 1277
SspMI CTAG 6 cut(s) 8, 465, 482, 525, 984, 1250
SstI GAGCTC 2 cut(s) 138, 430
StyD4I CCNGG 2 cut(s) 81, 1095
StyI CCWWGG 1 cut(s) 1072
TaaI ACNGT 4 cut(s) 185, 491, 899, 1575
TaiI ACGT 4 cut(s) 21, 30, 129, 552
TaqI TCGA 1 cut(s) 1038
TatI WGTACW 1 cut(s) 527
TfiI GAWTC 6 cut(s) 59, 758, 1268, 1356, 1532, 1566
Tru1I TTAA 9 cut(s) 216, 390, 410, 684, 740, 816, 935, 1200, 1524
Tru9I TTAA 9 cut(s) 216, 390, 410, 684, 740, 816, 935, 1200, 1524
TscAI CASTG 1 cut(s) 190
TseFI GTSAC 3 cut(s) 450, 694, 1349
TseI GCWGC 2 cut(s) 167, 170
Tsp45I GTSAC 3 cut(s) 450, 694, 1349
TspDTI ATGAA 8 cut(s) 705, 1269, 1348, 1363, 1419, 1428, 1446, 1488
TspGWI ACGGA 1 cut(s) 1525
TspRI CASTG 1 cut(s) 190
VpaK11BI GGWCC 1 cut(s) 4
XagI CCTNNNNNAGG 1 cut(s) 1214
XapI RAATTY 7 cut(s) 469, 566, 848, 930, 1202, 1369, 1419
XceI RCATGY 4 cut(s) 562, 879, 1095, 1224
XmnI GAANNNNTTC 2 cut(s) 1160, 1305
XspI CTAG 6 cut(s) 8, 465, 482, 525, 984, 1250
ZrmI AGTACT 1 cut(s) 529
Zsp2I ATGCAT 2 cut(s) 259, 877
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.