MD02G1108900.v1.1

RNA polymerase I-specific transcription initiation factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr02
OG0004110
Physical Location & Seq
Reverse (-)
8763922 .. 8769351
5430 bp
Loading structure...
UTR
Exon/CDS
Intron
MD02G1108900.v1.1.491

Sequence Viewer

Length: 1884 bp
ATGGGCGTCGAGTTGAGGAACAACGAGGCGGCTTTGGATGAGATGGCGGAGGACGGAGATTTCACCGATTCCGACCTCGTCTATCACATCAGGGATATTCTTTGCTCAGTGACTTCAGGTTCACCAGCGGCTCTGGCTGAAAACAAGGACTACGAACGGCTCATTTCGGTTGTGAGCCACGACGGAGGGCACGGCGCCGATGAGGAGGCTTTTCTTGTGACGACTTTGGAGGCACTATCTAGAGCAGTTTCTTATATAGATCATGATCTACACAATCTACTTCTCGCTGCAATTTTTGGGATGAACTTGTGGACGCAGAGGCCTCAGGTGATGGATGCAGTGATTCATTTCATTATTTCGTTGGCTGCTTCCAGCGGGAAGTTTGTAGATGAGTGTTTGGCGATGCTCACAAAACAATTCTTTCCACCTAAAAGTTTCCAGCTGCCACGTGGTCTTACAAAAAAGGACCAAGTTTTATCTCGCGTGCATTCAGCTCTGAATGATATTGCTGATATGCTACCACTTTCCCCTGCGAGATTGGTGCCAATTGTTTTAGCTGCAACACCACAATATCGTTTTCATGATATAAATACTCTTAGTGTTGTGATGTACGTAGAGAACATGCTAAAGTTGGAGAGTGGAGCTCTTGGTGAAGTGGTTCGGATCCCAATGCTAACTGGCGTGGTGGAATTGCTGCTAGACTTGGACGTGGAGATTGGATGGGATGACATAGAAGATGACTCAAGTAAAGGAATATTTGAGATGGAGCTAGAAGCTGTACACGAGTCTACGGATGATGATCTGAATGATGATAGTGAGATTGCAAGAAAATTAAGTACGAAGGTTTCAGGGAGTAATTCATTTGCCGAAAAATTAGATAGCTTGTTGGTGTTAACTTTTGAGCATCTTGAGTCTTGTGAAGTTGGTGGCCGTTTGATCGAGGTCTTTGAAACTCTACTGGAGTCATTTAAGAGGACTGTTTTGACTGCATACAAATCGAAGTTTGCCCAGTTTGTGATCTTCTATGCATGTTCTCTAGATCCTGGAAATTGTGGCGTGACATTTGCTTTGATGCTTGAAAATACTTTTTTCTGCAGTACCAACCCCCCACTTCTCAGAATGAGTGCCGTTTCTTATCTTGCTAGTTATTTGTCTCGTGCGAAGTTTCTGTCGGCTTCTGTGATTGCTAACACTTTGGAAAGGTTGGTGGATTGGTGCTGTAAATATGTCAAAACGCAGAATGACAAAGTAAATCCAGAAGCTCATAGAGTGTTTTATTCAGGATGTCAGGCTATCATGTATTTGCTTTGCTTCCGAATGAGGTCAATGATGGATGTTCCTCTGCTGAAGTCATGGCTTCTTCGTCTGCCTTTGGAGTCTGTTTTGAATAATAAATTGAGCCCGCTGCAGGTGTGTCTGCCTTCCATAGTAAACGAGTTTCTACGGCAATCAAAAGCAGCTGGTTTATTCATGACACTTGACAAATTCGATTTCGATGACTATCTGGAATCAGAACTTTCAAAGGAATTTGGTGGGAGGGAAAGGCTAGACATGTTCTTCCCATTTGACCCGTGCTTGCTGAAGAAAAGTGACAGATACATCCGGCCGAAGTTCATTTTCTGGTCGATGGTTCACCCTACATATGACGATGACGAAGATTCCAGTGATGAAGACATAGGTGACGCTGTCGCGGATGAAAATGTGGACGGAATGGATTATGCGATTTTGCAACAGCATTATGATCTCGATGAATTCGACTCCGCGTTGAACAAAATGTCCATCACACCGAAGAATTCCTTGCATAGTACATTTGGTGGTGCAATAAAACAACCCATGCGGATGCCTTCAAGAATTAGACCGTCGACAAGTCCGGAGTCTCTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RRN3

Protein Analysis

628

Amino Acids

70.46

Weight (kDa)

4.7

Isoelectric Point (pI)

42.62

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RRN3 PF05327 21 - 545 3.3e-119 RNA polymerase I specific transcription initiation factor RRN3
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1399
Acc36I ACCTGC 1 cut(s) 1399
AccB1I GGYRCC 2 cut(s) 194, 541
AccI GTMKAC 2 cut(s) 788, 1862
AccII CGCG 3 cut(s) 483, 1691, 1763
AccIII TCCGGA 1 cut(s) 1870
AciI CCGC 8 cut(s) 29, 47, 128, 375, 1403, 1691, 1761, 1837
AclWI GGATC 3 cut(s) 658, 671, 1034
AcoI YGGCCR 2 cut(s) 928, 1604
AcsI RAATTY 4 cut(s) 1484, 1526, 1751, 1792
AcuI CTGAAG 3 cut(s) 99, 1367, 1601
AcvI CACGTG 1 cut(s) 449
AcyI GRCGYC 2 cut(s) 6, 195
AfaI GTAC 5 cut(s) 611, 780, 838, 1099, 1807
AfiI CCNNNNNNNGG 1 cut(s) 1408
AflIII ACRYGT 1 cut(s) 1551
AgsI TTSAA 6 cut(s) 950, 1079, 1387, 1521, 1768, 1848
AjiI CACGTC 1 cut(s) 709
AjnI CCWGG 1 cut(s) 1042
AloI GAACNNNNNNTCC 2 cut(s) 1760, 1792
AluBI AGCT 9 cut(s) 442, 494, 557, 644, 769, 776, 882, 1262, 1460
AluI AGCT 9 cut(s) 442, 494, 557, 644, 769, 776, 882, 1262, 1460
Alw21I GWGCWC 1 cut(s) 646
Alw26I GTCTC 1 cut(s) 1158
AlwI GGATC 3 cut(s) 658, 671, 1034
Aor13HI TCCGGA 1 cut(s) 1870
AoxI GGCC 3 cut(s) 320, 928, 1604
ApeKI GCWGC 7 cut(s) 287, 365, 442, 557, 694, 1405, 1457
ApoI RAATTY 4 cut(s) 1484, 1526, 1751, 1792
ArsI GACNNNNNNTTYG 4 cut(s) 1051, 1083, 1154, 1186
Asp700I GAANNNNTTC 1 cut(s) 657
AspLEI GCGC 1 cut(s) 197
AspS9I GGNCC 1 cut(s) 466
AsuHPI GGTGA 6 cut(s) 55, 114, 340, 662, 1625, 1691
AvaII GGWCC 1 cut(s) 466
AxyI CCTNAGG 1 cut(s) 324
BaeGI GKGCMC 1 cut(s) 192
BamHI GGATCC 1 cut(s) 663
BanI GGYRCC 2 cut(s) 194, 541
BanII GRGCYC 2 cut(s) 646, 1403
BauI CACGAG 2 cut(s) 782, 1155
BbrPI CACGTG 1 cut(s) 449
BbsI GAAGAC 1 cut(s) 1677
Bbv12I GWGCWC 1 cut(s) 646
BbvI GCAGC 7 cut(s) 274, 352, 429, 544, 681, 1392, 1469
BccI CCATC 7 cut(s) 37, 325, 714, 757, 1324, 1621, 1787
BceAI ACGGC 5 cut(s) 173, 208, 915, 1112, 1460
BcgI CGANNNNNNTGC 4 cut(s) 523, 557, 978, 1012
BciT130I CCWGG 1 cut(s) 1044
BcoDI GTCTC 1 cut(s) 1158
BfaI CTAG 6 cut(s) 240, 698, 770, 1037, 1143, 1547
BfmI CTRYAG 2 cut(s) 1093, 1406
BfoI RGCGCY 1 cut(s) 198
BfuAI ACCTGC 1 cut(s) 1399
BisI GCNGC 9 cut(s) 30, 129, 288, 366, 443, 558, 695, 1406, 1458
BlsI GCNGC 9 cut(s) 31, 130, 289, 367, 444, 559, 696, 1407, 1459
Bme1390I CCNGG 1 cut(s) 1044
Bme18I GGWCC 1 cut(s) 466
BmgBI CACGTC 1 cut(s) 709
BmgT120I GGNCC 1 cut(s) 466
BmiI GGNNCC 3 cut(s) 196, 543, 665
BmrFI CCNGG 1 cut(s) 1044
BmrI ACTGGG 1 cut(s) 1003
BmsI GCATC 5 cut(s) 325, 393, 913, 1062, 1830
BmuI ACTGGG 1 cut(s) 1003
BpiI GAAGAC 1 cut(s) 1677
BplI GAGNNNNNCTC 2 cut(s) 628, 660
BpmI CTGGAG 1 cut(s) 980
BpuEI CTTGAG 2 cut(s) 727, 929
BsaAI YACGTR 2 cut(s) 449, 613
BsaBI GATNNNNATC 3 cut(s) 264, 798, 1500
BsaHI GRCGYC 2 cut(s) 6, 195
BsaWI WCCGGW 1 cut(s) 1870
BsaXI ACNNNNNCTCC 1 cut(s) 1865
Bsc4I CCNNNNNNNGG 1 cut(s) 1408
Bse1I ACTGG 4 cut(s) 682, 963, 1009, 1662
Bse21I CCTNAGG 1 cut(s) 324
Bse8I GATNNNNATC 3 cut(s) 264, 798, 1500
BseAI TCCGGA 1 cut(s) 1870
BseBI CCWGG 1 cut(s) 1044
BseJI GATNNNNATC 3 cut(s) 264, 798, 1500
BseLI CCNNNNNNNGG 1 cut(s) 1408
BseMII CTCAG 3 cut(s) 120, 338, 1129
BseNI ACTGG 4 cut(s) 682, 963, 1009, 1662
BseRI GAGGAG 1 cut(s) 218
BseSI GKGCMC 1 cut(s) 192
BseX3I CGGCCG 1 cut(s) 1604
BseXI GCAGC 7 cut(s) 274, 352, 429, 544, 681, 1392, 1469
Bsh1236I CGCG 3 cut(s) 483, 1691, 1763
Bsh1285I CGRYCG 1 cut(s) 1607
BshFI GGCC 3 cut(s) 322, 930, 1606
BshNI GGYRCC 2 cut(s) 194, 541
BsiEI CGRYCG 1 cut(s) 1607
BsiHKAI GWGCWC 1 cut(s) 646
BsiSI CCGG 2 cut(s) 1603, 1871
BslI CCNNNNNNNGG 1 cut(s) 1408
BsmAI GTCTC 1 cut(s) 1158
BsmI GAATGC 1 cut(s) 487
BsnI GGCC 3 cut(s) 322, 930, 1606
Bsp1286I GDGCHC 3 cut(s) 192, 646, 1403
Bsp13I TCCGGA 1 cut(s) 1870
Bsp1407I TGTACA 1 cut(s) 778
Bsp143I GATC 8 cut(s) 259, 265, 663, 799, 936, 1017, 1039, 1741
BspACI CCGC 8 cut(s) 29, 47, 128, 375, 1403, 1691, 1761, 1837
BspANI GGCC 3 cut(s) 322, 930, 1606
BspCNI CTCAG 3 cut(s) 119, 337, 1128
BspEI TCCGGA 1 cut(s) 1870
BspFNI CGCG 3 cut(s) 483, 1691, 1763
BspHI TCATGA 3 cut(s) 262, 580, 1470
BspLI GGNNCC 3 cut(s) 196, 543, 665
BspMAI CTGCAG 2 cut(s) 1097, 1410
BspMI ACCTGC 1 cut(s) 1399
BspPI GGATC 3 cut(s) 658, 671, 1034
BspT107I GGYRCC 2 cut(s) 194, 541
BsrGI TGTACA 1 cut(s) 778
BsrI ACTGG 4 cut(s) 682, 963, 1009, 1662
BssMI GATC 8 cut(s) 259, 265, 663, 799, 936, 1017, 1039, 1741
BssNI GRCGYC 2 cut(s) 6, 195
BssSI CACGAG 2 cut(s) 782, 1155
Bst2BI CACGAG 2 cut(s) 782, 1155
Bst2UI CCWGG 1 cut(s) 1044
Bst4CI ACNGT 2 cut(s) 979, 1860
BstACI GRCGYC 2 cut(s) 6, 195
BstAUI TGTACA 1 cut(s) 778
BstBAI YACGTR 2 cut(s) 449, 613
BstC8I GCNNGC 3 cut(s) 485, 1403, 1577
BstDEI CTNAG 4 cut(s) 106, 324, 596, 1115
BstFNI CGCG 3 cut(s) 483, 1691, 1763
BstH2I RGCGCY 1 cut(s) 198
BstHHI GCGC 1 cut(s) 197
BstKTI GATC 8 cut(s) 262, 268, 666, 802, 939, 1020, 1042, 1744
BstMAI GTCTC 1 cut(s) 1158
BstMBI GATC 8 cut(s) 259, 265, 663, 799, 936, 1017, 1039, 1741
BstMCI CGRYCG 1 cut(s) 1607
BstMWI GCNNNNNNNGC 1 cut(s) 134
BstNI CCWGG 1 cut(s) 1044
BstNSI RCATGY 3 cut(s) 625, 1032, 1555
BstSCI CCNGG 1 cut(s) 1042
BstSFI CTRYAG 2 cut(s) 1093, 1406
BstSLI GKGCMC 1 cut(s) 192
BstSNI TACGTA 1 cut(s) 613
BstUI CGCG 3 cut(s) 483, 1691, 1763
BstV1I GCAGC 7 cut(s) 274, 352, 429, 544, 681, 1392, 1469
BstV2I GAAGAC 1 cut(s) 1677
BstX2I RGATCY 2 cut(s) 663, 1039
BstYI RGATCY 2 cut(s) 663, 1039
BstZI CGGCCG 1 cut(s) 1604
Bsu36I CCTNAGG 1 cut(s) 324
BsuRI GGCC 3 cut(s) 322, 930, 1606
BtgZI GCGATG 1 cut(s) 416
BtrI CACGTC 1 cut(s) 709
BtsI GCAGTG 1 cut(s) 345
BtsIMutI CAGTG 3 cut(s) 114, 345, 1669
BveI ACCTGC 1 cut(s) 1399
Cac8I GCNNGC 3 cut(s) 485, 1403, 1577
CciI TCATGA 3 cut(s) 262, 580, 1470
CfoI GCGC 1 cut(s) 197
Cfr13I GGNCC 1 cut(s) 466
CseI GACGC 2 cut(s) 322, 1691
Csp6I GTAC 5 cut(s) 610, 779, 837, 1098, 1806
CviAII CATG 9 cut(s) 263, 581, 622, 1029, 1297, 1353, 1471, 1552, 1834
CviQI GTAC 5 cut(s) 610, 779, 837, 1098, 1806
DdeI CTNAG 4 cut(s) 106, 324, 596, 1115
DinI GGCGCC 1 cut(s) 196
DpnI GATC 8 cut(s) 261, 267, 665, 801, 938, 1019, 1041, 1743
DpnII GATC 8 cut(s) 259, 265, 663, 799, 936, 1017, 1039, 1741
EaeI YGGCCR 2 cut(s) 928, 1604
EagI CGGCCG 1 cut(s) 1604
EciI GGCGGA 1 cut(s) 62
Ecl136II GAGCTC 1 cut(s) 644
EclXI CGGCCG 1 cut(s) 1604
Eco105I TACGTA 1 cut(s) 613
Eco147I AGGCCT 1 cut(s) 322
Eco24I GRGCYC 2 cut(s) 646, 1403
Eco47I GGWCC 1 cut(s) 466
Eco52I CGGCCG 1 cut(s) 1604
Eco53kI GAGCTC 1 cut(s) 644
Eco57I CTGAAG 3 cut(s) 99, 1367, 1601
Eco72I CACGTG 1 cut(s) 449
Eco81I CCTNAGG 1 cut(s) 324
EcoICRI GAGCTC 1 cut(s) 644
EcoRI GAATTC 2 cut(s) 1751, 1792
EcoRII CCWGG 1 cut(s) 1042
EcoT22I ATGCAT 1 cut(s) 1030
EcoT38I GRGCYC 2 cut(s) 646, 1403
EgeI GGCGCC 1 cut(s) 196
EheI GGCGCC 1 cut(s) 196
FaeI CATG 9 cut(s) 266, 584, 625, 1032, 1300, 1356, 1474, 1555, 1837
FalI AAGNNNNNCTT 2 cut(s) 1781, 1813
FatI CATG 9 cut(s) 262, 580, 621, 1028, 1296, 1352, 1470, 1551, 1833
FauI CCCGC 2 cut(s) 368, 1410
FauNDI CATATG 1 cut(s) 1642
FblI GTMKAC 2 cut(s) 788, 1862
Fnu4HI GCNGC 9 cut(s) 30, 129, 288, 366, 443, 558, 695, 1406, 1458
FriOI GRGCYC 2 cut(s) 646, 1403
Fsp4HI GCNGC 9 cut(s) 30, 129, 288, 366, 443, 558, 695, 1406, 1458
FspBI CTAG 6 cut(s) 240, 698, 770, 1037, 1143, 1547
GlaI GCGC 1 cut(s) 196
GluI GCNGC 9 cut(s) 30, 129, 288, 366, 443, 558, 695, 1406, 1458
GsuI CTGGAG 1 cut(s) 980
HaeII RGCGCY 1 cut(s) 198
HaeIII GGCC 3 cut(s) 322, 930, 1606
HapII CCGG 2 cut(s) 1603, 1871
HgaI GACGC 2 cut(s) 322, 1691
HhaI GCGC 1 cut(s) 197
Hin1I GRCGYC 2 cut(s) 6, 195
Hin1II CATG 9 cut(s) 266, 584, 625, 1032, 1300, 1356, 1474, 1555, 1837
Hin6I GCGC 1 cut(s) 195
HinP1I GCGC 1 cut(s) 195
HincII GTYRAC 2 cut(s) 894, 1863
HindII GTYRAC 2 cut(s) 894, 1863
HpaI GTTAAC 1 cut(s) 894
HpaII CCGG 2 cut(s) 1603, 1871
HphI GGTGA 6 cut(s) 55, 114, 340, 662, 1625, 1691
Hpy166II GTNNAC 9 cut(s) 122, 312, 781, 789, 894, 1432, 1633, 1705, 1863
Hpy188I TCNGA 7 cut(s) 73, 498, 663, 804, 1118, 1316, 1513
Hpy8I GTNNAC 9 cut(s) 122, 312, 781, 789, 894, 1432, 1633, 1705, 1863
Hpy99I CGWCG 3 cut(s) 11, 185, 1864
HpyAV CCTTC 3 cut(s) 835, 1431, 1854
HpyCH4III ACNGT 2 cut(s) 979, 1860
HpyCH4IV ACGT 3 cut(s) 448, 612, 708
HpyF10VI GCNNNNNNNGC 1 cut(s) 134
HpyF3I CTNAG 4 cut(s) 106, 324, 596, 1115
HpySE526I ACGT 3 cut(s) 448, 612, 708
Hsp92I GRCGYC 2 cut(s) 6, 195
Hsp92II CATG 9 cut(s) 266, 584, 625, 1032, 1300, 1356, 1474, 1555, 1837
HspAI GCGC 1 cut(s) 195
KasI GGCGCC 1 cut(s) 194
Kpn2I TCCGGA 1 cut(s) 1870
KspAI GTTAAC 1 cut(s) 894
Kzo9I GATC 8 cut(s) 259, 265, 663, 799, 936, 1017, 1039, 1741
LmnI GCTCC 2 cut(s) 641, 766
Lsp1109I GCAGC 7 cut(s) 274, 352, 429, 544, 681, 1392, 1469
LweI GCATC 5 cut(s) 325, 393, 913, 1062, 1830
MaeI CTAG 6 cut(s) 240, 698, 770, 1037, 1143, 1547
MaeII ACGT 3 cut(s) 448, 612, 708
MaeIII GTNAC 5 cut(s) 109, 217, 1057, 1589, 1679
MalI GATC 8 cut(s) 261, 267, 665, 801, 938, 1019, 1041, 1743
MboI GATC 8 cut(s) 259, 265, 663, 799, 936, 1017, 1039, 1741
MboII GAAGA 8 cut(s) 746, 1012, 1352, 1549, 1594, 1667, 1682, 1801
MfeI CAATTG 1 cut(s) 546
MflI RGATCY 2 cut(s) 663, 1039
MhlI GDGCHC 3 cut(s) 192, 646, 1403
Mly113I GGCGCC 1 cut(s) 195
MlyI GAGTC 7 cut(s) 734, 794, 920, 971, 1385, 1751, 1883
MmeI TCCRAC 2 cut(s) 96, 612
Mph1103I ATGCAT 1 cut(s) 1030
MroI TCCGGA 1 cut(s) 1870
MroXI GAANNNNTTC 1 cut(s) 657
MseI TTAA 3 cut(s) 833, 893, 969
MslI CAYNNNNRTG 1 cut(s) 1838
MspA1I CMGCKG 5 cut(s) 128, 375, 442, 1405, 1460
MspI CCGG 2 cut(s) 1603, 1871
MspR9I CCNGG 1 cut(s) 1044
MunI CAATTG 1 cut(s) 546
Mva1269I GAATGC 1 cut(s) 487
MvaI CCWGG 1 cut(s) 1044
MvnI CGCG 3 cut(s) 483, 1691, 1763
MwoI GCNNNNNNNGC 1 cut(s) 134
NarI GGCGCC 1 cut(s) 195
NdeI CATATG 1 cut(s) 1642
NdeII GATC 8 cut(s) 259, 265, 663, 799, 936, 1017, 1039, 1741
NlaIII CATG 9 cut(s) 266, 584, 625, 1032, 1300, 1356, 1474, 1555, 1837
NlaIV GGNNCC 3 cut(s) 196, 543, 665
NmuCI GTSAC 5 cut(s) 109, 217, 1057, 1589, 1679
NsiI ATGCAT 1 cut(s) 1030
NspI RCATGY 3 cut(s) 625, 1032, 1555
PagI TCATGA 3 cut(s) 262, 580, 1470
PaqCI CACCTGC 1 cut(s) 1399
PceI AGGCCT 1 cut(s) 322
PciI ACATGT 1 cut(s) 1551
PcsI WCGNNNNNNNCGW 1 cut(s) 1752
PctI GAATGC 1 cut(s) 487
PdmI GAANNNNTTC 1 cut(s) 657
PfeI GAWTC 4 cut(s) 68, 343, 1508, 1658
PflFI GACNNNGTC 2 cut(s) 77, 1685
PfoI TCCNGGA 1 cut(s) 1042
PkrI GCNGC 9 cut(s) 31, 130, 289, 367, 444, 559, 696, 1407, 1459
PleI GAGTC 7 cut(s) 734, 793, 919, 970, 1384, 1751, 1882
PluTI GGCGCC 1 cut(s) 198
PmaCI CACGTG 1 cut(s) 449
PmlI CACGTG 1 cut(s) 449
PpsI GAGTC 7 cut(s) 734, 793, 919, 970, 1384, 1751, 1882
Ppu21I YACGTR 2 cut(s) 449, 613
PscI ACATGT 1 cut(s) 1551
Psp124BI GAGCTC 1 cut(s) 646
Psp6I CCWGG 1 cut(s) 1042
PspCI CACGTG 1 cut(s) 449
PspGI CCWGG 1 cut(s) 1042
PspN4I GGNNCC 3 cut(s) 196, 543, 665
PspPI GGNCC 1 cut(s) 466
PstI CTGCAG 2 cut(s) 1097, 1410
PsuI RGATCY 2 cut(s) 663, 1039
PsyI GACNNNGTC 2 cut(s) 77, 1685
PvuII CAGCTG 2 cut(s) 442, 1460
RsaI GTAC 5 cut(s) 611, 780, 838, 1099, 1807
RsaNI GTAC 5 cut(s) 610, 779, 837, 1098, 1806
RseI CAYNNNNRTG 1 cut(s) 1838
SacI GAGCTC 1 cut(s) 646
SalI GTCGAC 1 cut(s) 1861
SaqAI TTAA 3 cut(s) 833, 893, 969
SatI GCNGC 9 cut(s) 30, 129, 288, 366, 443, 558, 695, 1406, 1458
Sau3AI GATC 8 cut(s) 259, 265, 663, 799, 936, 1017, 1039, 1741
Sau96I GGNCC 1 cut(s) 466
SchI GAGTC 7 cut(s) 734, 794, 920, 971, 1385, 1751, 1883
ScrFI CCNGG 1 cut(s) 1044
SduI GDGCHC 3 cut(s) 192, 646, 1403
SfaNI GCATC 5 cut(s) 325, 393, 913, 1062, 1830
SfcI CTRYAG 2 cut(s) 1093, 1406
SfoI GGCGCC 1 cut(s) 196
SinI GGWCC 1 cut(s) 466
SmiMI CAYNNNNRTG 1 cut(s) 1838
SmlI CTYRAG 2 cut(s) 742, 908
SmoI CTYRAG 2 cut(s) 742, 908
SnaBI TACGTA 1 cut(s) 613
SseBI AGGCCT 1 cut(s) 322
SsiI CCGC 8 cut(s) 29, 47, 128, 375, 1403, 1691, 1761, 1837
SspDI GGCGCC 1 cut(s) 194
SspI AATATT 1 cut(s) 756
SspMI CTAG 6 cut(s) 240, 698, 770, 1037, 1143, 1547
SstI GAGCTC 1 cut(s) 646
StuI AGGCCT 1 cut(s) 322
StyD4I CCNGG 1 cut(s) 1042
TaaI ACNGT 2 cut(s) 979, 1860
TaiI ACGT 3 cut(s) 451, 615, 711
TaqI TCGA 9 cut(s) 9, 939, 998, 1488, 1494, 1625, 1746, 1755, 1862
TatI WGTACW 2 cut(s) 778, 1805
TauI GCSGC 2 cut(s) 32, 131
TfiI GAWTC 4 cut(s) 68, 343, 1508, 1658
Tru1I TTAA 3 cut(s) 833, 893, 969
Tru9I TTAA 3 cut(s) 833, 893, 969
TscAI CASTG 3 cut(s) 114, 345, 1669
TseFI GTSAC 5 cut(s) 109, 217, 1057, 1589, 1679
TseI GCWGC 7 cut(s) 287, 365, 442, 557, 694, 1405, 1457
Tsp45I GTSAC 5 cut(s) 109, 217, 1057, 1589, 1679
TspGWI ACGGA 4 cut(s) 69, 198, 806, 1722
TspRI CASTG 3 cut(s) 114, 345, 1669
Tth111I GACNNNGTC 2 cut(s) 77, 1685
VpaK11BI GGWCC 1 cut(s) 466
XapI RAATTY 4 cut(s) 1484, 1526, 1751, 1792
XbaI TCTAGA 2 cut(s) 239, 1036
XceI RCATGY 3 cut(s) 625, 1032, 1555
XcmI CCANNNNNNNNNTGG 1 cut(s) 446
XmiI GTMKAC 2 cut(s) 788, 1862
XmnI GAANNNNTTC 1 cut(s) 657
XspI CTAG 6 cut(s) 240, 698, 770, 1037, 1143, 1547
Zsp2I ATGCAT 1 cut(s) 1030
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.