Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0004110

Physical Location & Seq

Genomic Coordinates Reverse (-)

14496664 .. 14498181

Gene Structure 1518 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom15g20300.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 663 bp

ATGCAGAATGACAAAGTAAATCCGGAAGCTCATCGAGTGTTTTATTCTGGATGTCAGGCCATCATGTATTTGCTGTGCTTTCGAATAAGATCAATGATGGATGTTCCTCTGCTGAAGTCATGGCTTCTTCGTCTGCCTTTAGAGTCAGTTTTGAATAATAAATTGAGCCCGCTGGAGGTGTGTCTGCCTTCCATAGTAAACGAGTTTCTAAGGCAATCAAAAGCAGCTGGTTTATTCATGACACTTGAGAAATTCGAATTCGATGACTTTCTGGAATCAGAACTTTCAAAGGAATTTGGTGGGAGGGAAAGGCTCGATATGTTCTTCCCATTTGACCCGTGCTTGCTGAAGAAAAGTGACAGATACATCCGGCCGAAGTTCATTTTCTGGTCTATGGTTCATCCTACATATGATATTGACGAAGATTCCTGTGACGAAGACATAGGTGAATCTGTTGCGAATGAAAATGTGGACGGAATGGATTATGCGATTTTGCACAGCTTGGAGGAACAGCATTATGATCTCGATGAATTTGACTCTGCGTTGAACAAAATGTCCATCACACCAAAGAATTCCCTACATGGTACATTTGGTGGTGCAGTAAAAAAACCCATGCGAATGCCTTCAAGAATTAGGCCGTCCACAAGTCCGGAGTCTCTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RRN3

Protein Analysis

221

Amino Acids

25.42

Weight (kDa)

5.02

Isoelectric Point (pI)

57.63

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004110)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G30590 AT1G30590 AT1G30590 AT2G34750 AT2G39240 AT2G39240
fragaria_vesca	FvH4_1g10010 FvH4_1g10010
malus_domestica	MD02G1108900.v1.1
prunus_persica	Prupe.7G186400_v2.0.a1 Prupe.7G186400_v2.0.a1
pyrus_communis	pycom02g08740 pycom15g20300
rosa_chinensis	RchiOBHm_Chr2g0096801 RchiOBHm_Chr2g0096841
rosa_laevigata	RLG00000016671 RLG00000016673
rosa_multiflora	Rmu_co8477279.1_g000001 Rmu_ssc0000215.1_g000029
rosa_roxburghii	Rroxscaffold_2G00145270 Rroxscaffold_2G00145300
rosa_rugosa	Rorug02G0061000 Rorug02G0061300
rosa_samantha	Rh2AG108400 Rh2AG108800 Rh2BG110500 Rh2BG110800 Rh2CG112400 Rh2CG112900 Rh2DG111800 Rh2DG112100
rosa_wichuraiana	Rw2G008380 Rw2G008420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	2 cut(s)	22, 649
AciI	CCGC	1 cut(s)	170
AcoI	YGGCCR	1 cut(s)	371
AcsI	RAATTY	5 cut(s)	251, 257, 293, 530, 571
AcuI	CTGAAG	2 cut(s)	134, 368
AfaI	GTAC	1 cut(s)	586
AfiI	CCNNNNNNNGG	1 cut(s)	175
AgsI	TTSAA	4 cut(s)	154, 288, 547, 627
AloI	GAACNNNNNNTCC	2 cut(s)	539, 571
AluBI	AGCT	3 cut(s)	29, 227, 501
AluI	AGCT	3 cut(s)	29, 227, 501
Aor13HI	TCCGGA	2 cut(s)	22, 649
AoxI	GGCC	3 cut(s)	57, 371, 635
ApeKI	GCWGC	1 cut(s)	224
ApoI	RAATTY	5 cut(s)	251, 257, 293, 530, 571
Asp700I	GAANNNNTTC	1 cut(s)	622
AsuHPI	GGTGA	1 cut(s)	458
AsuII	TTCGAA	2 cut(s)	82, 255
BanII	GRGCYC	1 cut(s)	170
BbsI	GAAGAC	1 cut(s)	444
BbvI	GCAGC	1 cut(s)	236
BccI	CCATC	3 cut(s)	68, 91, 566
BceAI	ACGGC	1 cut(s)	622
BisI	GCNGC	1 cut(s)	225
BlsI	GCNGC	1 cut(s)	226
BpiI	GAAGAC	1 cut(s)	444
BpmI	CTGGAG	1 cut(s)	194
Bpu14I	TTCGAA	2 cut(s)	82, 255
BpuEI	CTTGAG	1 cut(s)	266
BsaWI	WCCGGW	2 cut(s)	22, 649
BsaXI	ACNNNNNCTCC	1 cut(s)	644
Bsc4I	CCNNNNNNNGG	1 cut(s)	175
BseAI	TCCGGA	2 cut(s)	22, 649
BseGI	GGATG	4 cut(s)	56, 106, 366, 400
BseLI	CCNNNNNNNGG	1 cut(s)	175
BseX3I	CGGCCG	1 cut(s)	371
BseXI	GCAGC	1 cut(s)	236
BsgI	GTGCAG	1 cut(s)	618
Bsh1285I	CGRYCG	1 cut(s)	374
BshFI	GGCC	3 cut(s)	59, 373, 637
BsiEI	CGRYCG	1 cut(s)	374
BsiSI	CCGG	3 cut(s)	23, 370, 650
BslI	CCNNNNNNNGG	1 cut(s)	175
BsmI	GAATGC	1 cut(s)	624
BsnI	GGCC	3 cut(s)	59, 373, 637
Bsp119I	TTCGAA	2 cut(s)	82, 255
Bsp1286I	GDGCHC	1 cut(s)	170
Bsp13I	TCCGGA	2 cut(s)	22, 649
Bsp143I	GATC	2 cut(s)	89, 520
BspACI	CCGC	1 cut(s)	170
BspANI	GGCC	3 cut(s)	59, 373, 637
BspEI	TCCGGA	2 cut(s)	22, 649
BspHI	TCATGA	1 cut(s)	237
BspT104I	TTCGAA	2 cut(s)	82, 255
BssMI	GATC	2 cut(s)	89, 520
BstBI	TTCGAA	2 cut(s)	82, 255
BstC8I	GCNNGC	2 cut(s)	170, 344
BstDEI	CTNAG	1 cut(s)	209
BstF5I	GGATG	4 cut(s)	56, 106, 366, 400
BstKTI	GATC	2 cut(s)	92, 523
BstMBI	GATC	2 cut(s)	89, 520
BstMCI	CGRYCG	1 cut(s)	374
BstV1I	GCAGC	1 cut(s)	236
BstV2I	GAAGAC	1 cut(s)	444
BstZI	CGGCCG	1 cut(s)	371
BsuRI	GGCC	3 cut(s)	59, 373, 637
BtsCI	GGATG	4 cut(s)	56, 106, 366, 400
Cac8I	GCNNGC	2 cut(s)	170, 344
CciI	TCATGA	1 cut(s)	237
Csp6I	GTAC	1 cut(s)	585
CviAII	CATG	5 cut(s)	64, 120, 238, 581, 613
CviJI	RGCY	9 cut(s)	29, 59, 124, 168, 227, 313, 373, 501, 637
CviKI_1	RGCY	9 cut(s)	29, 59, 124, 168, 227, 313, 373, 501, 637
CviQI	GTAC	1 cut(s)	585
DdeI	CTNAG	1 cut(s)	209
DpnI	GATC	2 cut(s)	91, 522
DpnII	GATC	2 cut(s)	89, 520
EaeI	YGGCCR	1 cut(s)	371
EagI	CGGCCG	1 cut(s)	371
EclXI	CGGCCG	1 cut(s)	371
Eco24I	GRGCYC	1 cut(s)	170
Eco52I	CGGCCG	1 cut(s)	371
Eco57I	CTGAAG	2 cut(s)	134, 368
EcoRI	GAATTC	2 cut(s)	257, 571
EcoT38I	GRGCYC	1 cut(s)	170
FaeI	CATG	5 cut(s)	67, 123, 241, 584, 616
FatI	CATG	5 cut(s)	63, 119, 237, 580, 612
FauI	CCCGC	1 cut(s)	177
FauNDI	CATATG	1 cut(s)	409
Fnu4HI	GCNGC	1 cut(s)	225
FokI	GGATG	4 cut(s)	63, 113, 353, 387
FriOI	GRGCYC	1 cut(s)	170
Fsp4HI	GCNGC	1 cut(s)	225
GluI	GCNGC	1 cut(s)	225
GsuI	CTGGAG	1 cut(s)	194
HaeIII	GGCC	3 cut(s)	59, 373, 637
HapII	CCGG	3 cut(s)	23, 370, 650
Hin1II	CATG	5 cut(s)	67, 123, 241, 584, 616
HinfI	GANTC	6 cut(s)	143, 275, 425, 449, 536, 653
HpaII	CCGG	3 cut(s)	23, 370, 650
HphI	GGTGA	1 cut(s)	458
Hpy166II	GTNNAC	3 cut(s)	199, 472, 642
Hpy188I	TCNGA	1 cut(s)	280
Hpy188III	TCNNGA	7 cut(s)	23, 48, 238, 272, 524, 627, 650
Hpy8I	GTNNAC	3 cut(s)	199, 472, 642
HpyAV	CCTTC	2 cut(s)	198, 633
HpyCH4V	TGCA	3 cut(s)	4, 496, 599
HpyF3I	CTNAG	1 cut(s)	209
Hsp92II	CATG	5 cut(s)	67, 123, 241, 584, 616
Kpn2I	TCCGGA	2 cut(s)	22, 649
Kzo9I	GATC	2 cut(s)	89, 520
LpnPI	CCDG	9 cut(s)	33, 36, 41, 158, 213, 257, 373, 383, 442
Lsp1109I	GCAGC	1 cut(s)	236
MaeIII	GTNAC	2 cut(s)	356, 431
MalI	GATC	2 cut(s)	91, 522
MboI	GATC	2 cut(s)	89, 520
MboII	GAAGA	5 cut(s)	119, 316, 361, 434, 449
MhlI	GDGCHC	1 cut(s)	170
MluCI	AATT	7 cut(s)	161, 251, 257, 293, 530, 571, 630
MlyI	GAGTC	3 cut(s)	152, 530, 662
MnlI	CCTC	4 cut(s)	117, 169, 297, 499
MroI	TCCGGA	2 cut(s)	22, 649
MroXI	GAANNNNTTC	1 cut(s)	622
MslI	CAYNNNNRTG	1 cut(s)	617
MspA1I	CMGCKG	2 cut(s)	172, 227
MspI	CCGG	3 cut(s)	23, 370, 650
Mva1269I	GAATGC	1 cut(s)	624
NdeI	CATATG	1 cut(s)	409
NdeII	GATC	2 cut(s)	89, 520
NlaIII	CATG	5 cut(s)	67, 123, 241, 584, 616
NmuCI	GTSAC	2 cut(s)	356, 431
NspV	TTCGAA	2 cut(s)	82, 255
PagI	TCATGA	1 cut(s)	237
PctI	GAATGC	1 cut(s)	624
PdmI	GAANNNNTTC	1 cut(s)	622
PfeI	GAWTC	3 cut(s)	275, 425, 449
PkrI	GCNGC	1 cut(s)	226
PleI	GAGTC	3 cut(s)	151, 530, 661
PpsI	GAGTC	3 cut(s)	151, 530, 661
PvuII	CAGCTG	1 cut(s)	227
RsaI	GTAC	1 cut(s)	586
RsaNI	GTAC	1 cut(s)	585
RseI	CAYNNNNRTG	1 cut(s)	617
SatI	GCNGC	1 cut(s)	225
Sau3AI	GATC	2 cut(s)	89, 520
SchI	GAGTC	3 cut(s)	152, 530, 662
SduI	GDGCHC	1 cut(s)	170
SetI	ASST	5 cut(s)	31, 180, 229, 448, 503
SfuI	TTCGAA	2 cut(s)	82, 255
SmiMI	CAYNNNNRTG	1 cut(s)	617
SmlI	CTYRAG	1 cut(s)	245
SmoI	CTYRAG	1 cut(s)	245
Sse9I	AATT	7 cut(s)	161, 251, 257, 293, 530, 571, 630
SsiI	CCGC	1 cut(s)	170
TaqI	TCGA	6 cut(s)	34, 82, 255, 261, 315, 525
TasI	AATT	7 cut(s)	161, 251, 257, 293, 530, 571, 630
TfiI	GAWTC	3 cut(s)	275, 425, 449
TseFI	GTSAC	2 cut(s)	356, 431
TseI	GCWGC	1 cut(s)	224
Tsp45I	GTSAC	2 cut(s)	356, 431
TspDTI	ATGAA	5 cut(s)	226, 370, 389, 477, 543
TspGWI	ACGGA	1 cut(s)	489
XapI	RAATTY	5 cut(s)	251, 257, 293, 530, 571
XmnI	GAANNNNTTC	1 cut(s)	622

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.