Rh2DG111800

RNA polymerase I-specific transcription initiation factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0004110
Physical Location & Seq
Reverse (-)
9192784 .. 9198336
5553 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG111800.1

Sequence Viewer

Length: 1488 bp
ATGGGCGTCGAGCTTCGGCAAGACCTTGATATGGACGACGGCGGCGTTTACTCCGACTACGACCTAGCTCTACACGTCAAGGATGTTCTCCTCTCAGTCTCCTCTGGCGATGTTGTGTCTGTTGAGAACTACAGAGAGCTCGTCGGGCGTCTGTACCCTAGAGAACGGCACTCTCCCGATGACGTCGCCAAGCTCGTGGCGAGCTTGAAGGGACTGTCTGGAGCAGCCTCTTATATTGACAGTGCTGTACATGTTGGACTTCTCTCTCCGCTTTTTGCGATGAGCTTGTGGAACTATGGGCCTGATGTGATGGATGCATTGATTGAGTTGATTATTTCCTTGGCTGCTTCAAGTGGGAAGTATCTTGATCTATGCCTGGCTATGCTTACACGCCATTTCGAGACGCCTTCAAATTTCTTGGAGAAGTTGAAGTTGCCGTCTGGCCTTACAAAGAAGGACCAAGTTTTAACTCGTGTGCATTCAGCTCTGAAAGATATAGCTGATGTGGTTCCGCTTTCCCCTGCAAGAATAGTGACTATAGTTTCTGATCGTCTAGAGCTATATCGGCAAATGAGGGGAACTAGTACACATGGTCTTGTGATATTCGTAGAGAACATGTTAAAGTTGGAGGGTGGTGCACTTGGTGAAGTTGTTCGAGTTTCCATGCTTACGAAGGTGGTGGAATTGCTGCTACATTTGGATGTCGAAATGGGATCATGGGACAAAGTGTTACAAGATCATGGAATATTTCAGATGGAGCTAGAAGATGTGGACGACTTTACAGAAGATTTTCTGAATGATGGTACTGAGCATGCAAGAGAAGCAACTATAAACGACGTAACTTTGAAAAGTTTTGCTGAAAAGTTGGATACCTTGATGGTGTTAACTTTTGAGCACCTTGAATCCTGTGAAGCTGGTGGCCGGTTGAGTGAGGTCTTCAAAACTCTTCTCGAGACATTTAGGAACAAAGTTTTGACCACATGCAAGTCAAAATTTGTCCAGTTTGTGATGTTTTATGCCTGTGCTCTTGATCCTGTAAACTGTGGTGAGGAATTTGCCACAAACCTTGTCGAAATTTTTCTTTACGATGCCAACCTCACATGTCTCAGGATGAGAGCTGTTGCGTACCTTGCTAGCTACTTGTCTCGAGCGATGTTTATGTCAGCCTCCATAGTTGCTCAAACGCTAAAAAGGTTGGTGGGTTGGTGTTTTAACTATGTCAAAACGAAGAAAGGTGGAGTAAACCCAGAAAAAGATAAATTATTTTATGCTGCGTGTCAGGCCATCATGTATTTGCTGTGCTTCCGAATGAGATCTTTGATGGATGATCCTCAATCAAAGTCGTTGCTTGCTGGTCTACCTTTAGAGTCGATTTTGAGCACTGAAATTAGCCCATTGAAGGTAAGGACTGTGTTGGAGTACAACCTTAAGATTTGTAGAAGCATCTCTTGTCATGAAGCGTCACCCCCGGACAATAAACTGGCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RRN3

Protein Analysis

495

Amino Acids

55.21

Weight (kDa)

5.29

Isoelectric Point (pI)

33.85

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RRN3 PF05327 22 - 468 8.6e-86 RNA polymerase I specific transcription initiation factor RRN3
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 186
AccI GTMKAC 1 cut(s) 1357
AciI CCGC 3 cut(s) 42, 269, 512
AclWI GGATC 3 cut(s) 721, 1025, 1322
AcoI YGGCCR 1 cut(s) 919
AcsI RAATTY 4 cut(s) 412, 992, 1052, 1074
AcyI GRCGYC 4 cut(s) 6, 148, 183, 404
AdeI CACNNNGTG 1 cut(s) 644
AfaI GTAC 6 cut(s) 155, 249, 586, 805, 1127, 1421
AfiI CCNNNNNNNGG 2 cut(s) 31, 1399
AflII CTTAAG 1 cut(s) 1427
AflIII ACRYGT 4 cut(s) 73, 250, 615, 1100
AgsI TTSAA 8 cut(s) 208, 351, 411, 430, 847, 902, 940, 1399
AhlI ACTAGT 1 cut(s) 581
AjiI CACGTC 1 cut(s) 76
AjnI CCWGG 1 cut(s) 375
Alw21I GWGCWC 5 cut(s) 141, 640, 897, 1027, 1382
Alw26I GTCTC 5 cut(s) 103, 395, 947, 1109, 1149
Alw44I GTGCAC 1 cut(s) 636
AlwI GGATC 3 cut(s) 721, 1025, 1322
Ama87I CYCGRG 2 cut(s) 950, 1146
AoxI GGCC 4 cut(s) 299, 442, 919, 1281
ApaLI GTGCAC 1 cut(s) 636
ApeKI GCWGC 4 cut(s) 224, 344, 688, 1271
ApoI RAATTY 4 cut(s) 412, 992, 1052, 1074
Asp700I GAANNNNTTC 3 cut(s) 651, 789, 1077
AspS9I GGNCC 2 cut(s) 299, 457
AsuC2I CCSGG 1 cut(s) 1469
AsuHPI GGTGA 3 cut(s) 656, 1058, 1455
AsuNHI GCTAGC 1 cut(s) 1133
AvaI CYCGRG 2 cut(s) 950, 1146
AvaII GGWCC 1 cut(s) 457
BaeGI GKGCMC 1 cut(s) 640
BanII GRGCYC 1 cut(s) 141
BauI CACGAG 2 cut(s) 194, 471
BbsI GAAGAC 1 cut(s) 928
Bbv12I GWGCWC 5 cut(s) 141, 640, 897, 1027, 1382
BbvI GCAGC 4 cut(s) 236, 331, 675, 1258
BccI CCATC 6 cut(s) 304, 748, 794, 871, 1292, 1315
BceAI ACGGC 3 cut(s) 55, 182, 421
BciT130I CCWGG 1 cut(s) 377
BciVI GTATCC 1 cut(s) 862
BcnI CCSGG 1 cut(s) 1469
BcoDI GTCTC 5 cut(s) 103, 395, 947, 1109, 1149
BcuI ACTAGT 1 cut(s) 581
BfaI CTAG 6 cut(s) 65, 159, 554, 582, 761, 1134
BfmI CTRYAG 2 cut(s) 130, 537
BfrI CTTAAG 1 cut(s) 1427
BfuI GTATCC 1 cut(s) 862
BglII AGATCT 1 cut(s) 1313
BisI GCNGC 5 cut(s) 43, 225, 345, 689, 1272
BlsI GCNGC 5 cut(s) 44, 226, 346, 690, 1273
Bme1390I CCNGG 2 cut(s) 377, 1469
Bme18I GGWCC 1 cut(s) 457
BmeT110I CYCGRG 2 cut(s) 950, 1146
BmgBI CACGTC 1 cut(s) 76
BmgT120I GGNCC 2 cut(s) 299, 457
BmiI GGNNCC 1 cut(s) 510
BmrFI CCNGG 2 cut(s) 377, 1469
BmsI GCATC 3 cut(s) 304, 1078, 1452
BmtI GCTAGC 1 cut(s) 1137
BpiI GAAGAC 1 cut(s) 928
BpmI CTGGAG 1 cut(s) 240
BpuMI CCSGG 1 cut(s) 1469
BsaHI GRCGYC 4 cut(s) 6, 148, 183, 404
BsaJI CCNNGG 2 cut(s) 339, 1467
Bsc4I CCNNNNNNNGG 2 cut(s) 31, 1399
Bse118I RCCGGY 1 cut(s) 921
Bse1I ACTGG 2 cut(s) 1000, 1485
BseBI CCWGG 1 cut(s) 377
BseDI CCNNGG 2 cut(s) 339, 1467
BseGI GGATG 5 cut(s) 88, 319, 706, 1116, 1330
BseLI CCNNNNNNNGG 2 cut(s) 31, 1399
BseMII CTCAG 3 cut(s) 108, 798, 1120
BseNI ACTGG 2 cut(s) 1000, 1485
BseRI GAGGAG 2 cut(s) 80, 91
BseSI GKGCMC 1 cut(s) 640
BseXI GCAGC 4 cut(s) 236, 331, 675, 1258
BshFI GGCC 4 cut(s) 301, 444, 921, 1283
BsiHKAI GWGCWC 5 cut(s) 141, 640, 897, 1027, 1382
BsiHKCI CYCGRG 2 cut(s) 950, 1146
BsiSI CCGG 2 cut(s) 922, 1469
BslFI GGGAC 2 cut(s) 225, 734
BslI CCNNNNNNNGG 2 cut(s) 31, 1399
BsmAI GTCTC 5 cut(s) 103, 395, 947, 1109, 1149
BsmBI CGTCTC 1 cut(s) 395
BsmFI GGGAC 2 cut(s) 225, 734
BsmI GAATGC 1 cut(s) 478
BsnI GGCC 4 cut(s) 301, 444, 921, 1283
BsoBI CYCGRG 2 cut(s) 950, 1146
Bsp1286I GDGCHC 5 cut(s) 141, 640, 897, 1027, 1382
Bsp1407I TGTACA 1 cut(s) 247
Bsp143I GATC 7 cut(s) 367, 547, 713, 736, 1030, 1313, 1327
BspACI CCGC 3 cut(s) 42, 269, 512
BspANI GGCC 4 cut(s) 301, 444, 921, 1283
BspCNI CTCAG 3 cut(s) 107, 799, 1119
BspHI TCATGA 1 cut(s) 1453
BspLI GGNNCC 1 cut(s) 510
BspOI GCTAGC 1 cut(s) 1137
BspPI GGATC 3 cut(s) 721, 1025, 1322
BspTI CTTAAG 1 cut(s) 1427
BsrFI RCCGGY 1 cut(s) 921
BsrGI TGTACA 1 cut(s) 247
BsrI ACTGG 2 cut(s) 1000, 1485
BssAI RCCGGY 1 cut(s) 921
BssECI CCNNGG 2 cut(s) 339, 1467
BssMI GATC 7 cut(s) 367, 547, 713, 736, 1030, 1313, 1327
BssNI GRCGYC 4 cut(s) 6, 148, 183, 404
BssSI CACGAG 2 cut(s) 194, 471
BssT1I CCWWGG 1 cut(s) 339
Bst2BI CACGAG 2 cut(s) 194, 471
Bst2UI CCWGG 1 cut(s) 377
Bst4CI ACNGT 4 cut(s) 216, 242, 1043, 1411
Bst6I CTCTTC 1 cut(s) 951
BstACI GRCGYC 4 cut(s) 6, 148, 183, 404
BstAFI CTTAAG 1 cut(s) 1427
BstAUI TGTACA 1 cut(s) 247
BstC8I GCNNGC 4 cut(s) 202, 813, 1135, 1350
BstDEI CTNAG 3 cut(s) 94, 807, 1106
BstF5I GGATG 5 cut(s) 88, 319, 706, 1116, 1330
BstKTI GATC 7 cut(s) 370, 550, 716, 739, 1033, 1316, 1330
BstMAI GTCTC 5 cut(s) 103, 395, 947, 1109, 1149
BstMBI GATC 7 cut(s) 367, 547, 713, 736, 1030, 1313, 1327
BstMWI GCNNNNNNNGC 5 cut(s) 145, 565, 821, 1130, 1280
BstNI CCWGG 1 cut(s) 377
BstNSI RCATGY 5 cut(s) 254, 619, 815, 984, 1104
BstSCI CCNGG 2 cut(s) 375, 1467
BstSFI CTRYAG 2 cut(s) 130, 537
BstSLI GKGCMC 1 cut(s) 640
BstV1I GCAGC 4 cut(s) 236, 331, 675, 1258
BstV2I GAAGAC 1 cut(s) 928
BstX2I RGATCY 1 cut(s) 1313
BstXI CCANNNNNNTGG 1 cut(s) 196
BstYI RGATCY 1 cut(s) 1313
BsuI GTATCC 1 cut(s) 862
BsuRI GGCC 4 cut(s) 301, 444, 921, 1283
BtgZI GCGATG 3 cut(s) 123, 293, 1166
BtrI CACGTC 1 cut(s) 76
BtsCI GGATG 5 cut(s) 88, 319, 706, 1116, 1330
BtsIMutI CAGTG 2 cut(s) 247, 1380
Cac8I GCNNGC 4 cut(s) 202, 813, 1135, 1350
CciI TCATGA 1 cut(s) 1453
Cfr10I RCCGGY 1 cut(s) 921
Cfr13I GGNCC 2 cut(s) 299, 457
CseI GACGC 3 cut(s) 137, 412, 1449
Csp6I GTAC 6 cut(s) 154, 248, 585, 804, 1126, 1420
CspCI CAANNNNNGTGG 2 cut(s) 1048, 1083
CviQI GTAC 6 cut(s) 154, 248, 585, 804, 1126, 1420
DdeI CTNAG 3 cut(s) 94, 807, 1106
DpnI GATC 7 cut(s) 369, 549, 715, 738, 1032, 1315, 1329
DpnII GATC 7 cut(s) 367, 547, 713, 736, 1030, 1313, 1327
DraIII CACNNNGTG 1 cut(s) 644
EaeI YGGCCR 1 cut(s) 919
Eam1104I CTCTTC 1 cut(s) 951
EarI CTCTTC 1 cut(s) 951
Ecl136II GAGCTC 1 cut(s) 139
Eco130I CCWWGG 1 cut(s) 339
Eco24I GRGCYC 1 cut(s) 141
Eco47I GGWCC 1 cut(s) 457
Eco53kI GAGCTC 1 cut(s) 139
Eco88I CYCGRG 2 cut(s) 950, 1146
EcoICRI GAGCTC 1 cut(s) 139
EcoRII CCWGG 1 cut(s) 375
EcoT14I CCWWGG 1 cut(s) 339
EcoT22I ATGCAT 1 cut(s) 319
EcoT38I GRGCYC 1 cut(s) 141
ErhI CCWWGG 1 cut(s) 339
Esp3I CGTCTC 1 cut(s) 395
FalI AAGNNNNNCTT 2 cut(s) 1432, 1464
FaqI GGGAC 2 cut(s) 225, 734
FblI GTMKAC 1 cut(s) 1357
Fnu4HI GCNGC 5 cut(s) 43, 225, 345, 689, 1272
FokI GGATG 5 cut(s) 95, 326, 713, 1123, 1337
FriOI GRGCYC 1 cut(s) 141
Fsp4HI GCNGC 5 cut(s) 43, 225, 345, 689, 1272
FspBI CTAG 6 cut(s) 65, 159, 554, 582, 761, 1134
GluI GCNGC 5 cut(s) 43, 225, 345, 689, 1272
GsuI CTGGAG 1 cut(s) 240
HaeIII GGCC 4 cut(s) 301, 444, 921, 1283
HapII CCGG 2 cut(s) 922, 1469
HgaI GACGC 3 cut(s) 137, 412, 1449
Hin1I GRCGYC 4 cut(s) 6, 148, 183, 404
HincII GTYRAC 1 cut(s) 885
HindII GTYRAC 1 cut(s) 885
HinfI GANTC 2 cut(s) 902, 1367
HpaI GTTAAC 1 cut(s) 885
HpaII CCGG 2 cut(s) 922, 1469
HphI GGTGA 3 cut(s) 656, 1058, 1455
Hpy166II GTNNAC 8 cut(s) 49, 587, 638, 772, 885, 1039, 1243, 1358
Hpy188I TCNGA 6 cut(s) 55, 489, 547, 753, 795, 1307
Hpy8I GTNNAC 8 cut(s) 49, 587, 638, 772, 885, 1039, 1243, 1358
Hpy99I CGWCG 5 cut(s) 11, 41, 146, 188, 839
HpyAV CCTTC 5 cut(s) 202, 417, 448, 667, 1393
HpyCH4III ACNGT 4 cut(s) 216, 242, 1043, 1411
HpyCH4IV ACGT 3 cut(s) 75, 183, 837
HpyCH4V TGCA 6 cut(s) 317, 478, 524, 638, 815, 984
HpyF10VI GCNNNNNNNGC 5 cut(s) 145, 565, 821, 1130, 1280
HpyF3I CTNAG 3 cut(s) 94, 807, 1106
HpySE526I ACGT 3 cut(s) 75, 183, 837
Hsp92I GRCGYC 4 cut(s) 6, 148, 183, 404
KspAI GTTAAC 1 cut(s) 885
Kzo9I GATC 7 cut(s) 367, 547, 713, 736, 1030, 1313, 1327
LmnI GCTCC 2 cut(s) 221, 757
Lsp1109I GCAGC 4 cut(s) 236, 331, 675, 1258
LweI GCATC 3 cut(s) 304, 1078, 1452
MaeI CTAG 6 cut(s) 65, 159, 554, 582, 761, 1134
MaeII ACGT 3 cut(s) 75, 183, 837
MaeIII GTNAC 4 cut(s) 532, 729, 838, 1461
MalI GATC 7 cut(s) 369, 549, 715, 738, 1032, 1315, 1329
MboI GATC 7 cut(s) 367, 547, 713, 736, 1030, 1313, 1327
MboII GAAGA 5 cut(s) 776, 797, 928, 938, 1240
MflI RGATCY 1 cut(s) 1313
MhlI GDGCHC 5 cut(s) 141, 640, 897, 1027, 1382
MluCI AATT 7 cut(s) 412, 683, 992, 1052, 1074, 1259, 1386
MlyI GAGTC 1 cut(s) 1376
MmeI TCCRAC 5 cut(s) 78, 235, 606, 846, 1395
Mph1103I ATGCAT 1 cut(s) 319
MroXI GAANNNNTTC 3 cut(s) 651, 789, 1077
MseI TTAA 5 cut(s) 467, 620, 884, 1212, 1428
MslI CAYNNNNRTG 1 cut(s) 699
MspCI CTTAAG 1 cut(s) 1427
MspI CCGG 2 cut(s) 922, 1469
MspR9I CCNGG 2 cut(s) 377, 1469
Mva1269I GAATGC 1 cut(s) 478
MvaI CCWGG 1 cut(s) 377
MwoI GCNNNNNNNGC 5 cut(s) 145, 565, 821, 1130, 1280
NciI CCSGG 1 cut(s) 1469
NdeII GATC 7 cut(s) 367, 547, 713, 736, 1030, 1313, 1327
NheI GCTAGC 1 cut(s) 1133
NlaIV GGNNCC 1 cut(s) 510
NmuCI GTSAC 2 cut(s) 532, 1461
NsiI ATGCAT 1 cut(s) 319
NspI RCATGY 5 cut(s) 254, 619, 815, 984, 1104
PaeI GCATGC 1 cut(s) 815
PaeR7I CTCGAG 2 cut(s) 950, 1146
PagI TCATGA 1 cut(s) 1453
PciI ACATGT 3 cut(s) 250, 615, 1100
PcsI WCGNNNNNNNCGW 2 cut(s) 42, 192
PctI GAATGC 1 cut(s) 478
PdmI GAANNNNTTC 3 cut(s) 651, 789, 1077
PfeI GAWTC 1 cut(s) 902
PkrI GCNGC 5 cut(s) 44, 226, 346, 690, 1273
PleI GAGTC 1 cut(s) 1375
PpsI GAGTC 1 cut(s) 1375
PscI ACATGT 3 cut(s) 250, 615, 1100
Psp124BI GAGCTC 1 cut(s) 141
Psp6I CCWGG 1 cut(s) 375
PspGI CCWGG 1 cut(s) 375
PspN4I GGNNCC 1 cut(s) 510
PspPI GGNCC 2 cut(s) 299, 457
PsuI RGATCY 1 cut(s) 1313
RsaI GTAC 6 cut(s) 155, 249, 586, 805, 1127, 1421
RsaNI GTAC 6 cut(s) 154, 248, 585, 804, 1126, 1420
RseI CAYNNNNRTG 1 cut(s) 699
SacI GAGCTC 1 cut(s) 141
SaqAI TTAA 5 cut(s) 467, 620, 884, 1212, 1428
SatI GCNGC 5 cut(s) 43, 225, 345, 689, 1272
Sau3AI GATC 7 cut(s) 367, 547, 713, 736, 1030, 1313, 1327
Sau96I GGNCC 2 cut(s) 299, 457
SchI GAGTC 1 cut(s) 1376
ScrFI CCNGG 2 cut(s) 377, 1469
SduI GDGCHC 5 cut(s) 141, 640, 897, 1027, 1382
SfaNI GCATC 3 cut(s) 304, 1078, 1452
SfcI CTRYAG 2 cut(s) 130, 537
Sfr274I CTCGAG 2 cut(s) 950, 1146
SinI GGWCC 1 cut(s) 457
SlaI CTCGAG 2 cut(s) 950, 1146
SmiMI CAYNNNNRTG 1 cut(s) 699
SmlI CTYRAG 3 cut(s) 950, 1146, 1427
SmoI CTYRAG 3 cut(s) 950, 1146, 1427
SpeI ACTAGT 1 cut(s) 581
SphI GCATGC 1 cut(s) 815
Sse9I AATT 7 cut(s) 412, 683, 992, 1052, 1074, 1259, 1386
SsiI CCGC 3 cut(s) 42, 269, 512
SspI AATATT 1 cut(s) 747
SspMI CTAG 6 cut(s) 65, 159, 554, 582, 761, 1134
SstI GAGCTC 1 cut(s) 141
StyD4I CCNGG 2 cut(s) 375, 1467
StyI CCWWGG 1 cut(s) 339
TaaI ACNGT 4 cut(s) 216, 242, 1043, 1411
TaiI ACGT 3 cut(s) 78, 186, 840
TaqI TCGA 8 cut(s) 9, 399, 655, 705, 951, 1071, 1147, 1370
TasI AATT 7 cut(s) 412, 683, 992, 1052, 1074, 1259, 1386
TatI WGTACW 3 cut(s) 247, 584, 1419
TauI GCSGC 1 cut(s) 45
TfiI GAWTC 1 cut(s) 902
Tru1I TTAA 5 cut(s) 467, 620, 884, 1212, 1428
Tru9I TTAA 5 cut(s) 467, 620, 884, 1212, 1428
TscAI CASTG 2 cut(s) 247, 1387
TseFI GTSAC 2 cut(s) 532, 1461
TseI GCWGC 4 cut(s) 224, 344, 688, 1271
Tsp45I GTSAC 2 cut(s) 532, 1461
TspDTI ATGAA 1 cut(s) 1470
TspRI CASTG 2 cut(s) 247, 1387
Vha464I CTTAAG 1 cut(s) 1427
VneI GTGCAC 1 cut(s) 636
VpaK11BI GGWCC 1 cut(s) 457
XapI RAATTY 4 cut(s) 412, 992, 1052, 1074
XbaI TCTAGA 1 cut(s) 553
XceI RCATGY 5 cut(s) 254, 619, 815, 984, 1104
XhoI CTCGAG 2 cut(s) 950, 1146
XmiI GTMKAC 1 cut(s) 1357
XmnI GAANNNNTTC 3 cut(s) 651, 789, 1077
XspI CTAG 6 cut(s) 65, 159, 554, 582, 761, 1134
ZraI GACGTC 1 cut(s) 184
Zsp2I ATGCAT 1 cut(s) 319
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.