Rw2G008420

RNA polymerase I-specific transcription initiation factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
OG0004110
Physical Location & Seq
Reverse (-)
8341945 .. 8342889
945 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G008420.1

Sequence Viewer

Length: 516 bp
ATGACCGCCGAGCTCAGAGAAGACCTTGATATGAACGACGCCGTTTACTCCAAGTATGACCTAGCTCTGCACGTCAAGGAAGTTCTCGTTTCGTTCTCATCTGGAGATGTTGAATCTTCTGAAAACTACCGGAACCTGGTTGCGGTTCTGCACAGGAAGAAAAACCTCTCCCCTAGAGACGTAGCTGAGCTCGTGCTGCTTATATTGACAGTGCTCATTGCGGACCTTTACTCTGCAATTTTTAACATGAGCCTGTGGAACTATGGGCCGGAGGTGATGGATGCATTGATTGAATTGATTATTGCTTTGGCCACTTCAAGTGGGAAGTATCTTGATATATGCTTGGAGATGCTCGTATCCAATTTCGTGTCTCATGATCCTTATATGCTGGATAAGTTGAAGATGCCGCATGGTCTTAAAAAGAAGGATCAAGTTTTAACTCGTGTCCACAGAGCTCTGAAAGTTATCTCTGATTTGTCACCTCTTTCCCCTAGAAATTTGCTGATACTAGTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RRN3

Protein Analysis

171

Amino Acids

19.3

Weight (kDa)

5.7

Isoelectric Point (pI)

38.01

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RRN3 PF05327 23 - 168 1.3e-15 RNA polymerase I specific transcription initiation factor RRN3
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 4 cut(s) 6, 143, 221, 407
AclWI GGATC 2 cut(s) 371, 435
AcoI YGGCCR 1 cut(s) 309
AcsI RAATTY 1 cut(s) 496
AcyI GRCGYC 1 cut(s) 39
AfiI CCNNNNNNNGG 2 cut(s) 136, 142
AgsI TTSAA 4 cut(s) 113, 293, 318, 400
AhlI ACTAGT 1 cut(s) 508
AjiI CACGTC 1 cut(s) 73
AjnI CCWGG 1 cut(s) 135
AluBI AGCT 5 cut(s) 13, 65, 185, 190, 455
AluI AGCT 5 cut(s) 13, 65, 185, 190, 455
Alw21I GWGCWC 4 cut(s) 15, 192, 216, 457
Alw26I GTCTC 2 cut(s) 171, 375
AlwI GGATC 2 cut(s) 371, 435
AoxI GGCC 2 cut(s) 266, 309
ApeKI GCWGC 1 cut(s) 196
ApoI RAATTY 1 cut(s) 496
AspS9I GGNCC 2 cut(s) 223, 266
AsuHPI GGTGA 2 cut(s) 286, 471
AvaII GGWCC 1 cut(s) 223
BalI TGGCCA 1 cut(s) 311
BanII GRGCYC 3 cut(s) 15, 192, 457
BauI CACGAG 2 cut(s) 191, 441
BbsI GAAGAC 1 cut(s) 27
Bbv12I GWGCWC 4 cut(s) 15, 192, 216, 457
BbvI GCAGC 1 cut(s) 183
BccI CCATC 1 cut(s) 271
BceAI ACGGC 1 cut(s) 26
BciT130I CCWGG 1 cut(s) 137
BciVI GTATCC 1 cut(s) 367
BcoDI GTCTC 2 cut(s) 171, 375
BcuI ACTAGT 1 cut(s) 508
BfaI CTAG 4 cut(s) 62, 174, 492, 509
BfuI GTATCC 1 cut(s) 367
BisI GCNGC 2 cut(s) 197, 407
BlpI GCTNAGC 1 cut(s) 186
BlsI GCNGC 2 cut(s) 198, 408
Bme1390I CCNGG 1 cut(s) 137
Bme18I GGWCC 1 cut(s) 223
BmgBI CACGTC 1 cut(s) 73
BmgT120I GGNCC 2 cut(s) 223, 266
BmiI GGNNCC 1 cut(s) 134
BmrFI CCNGG 1 cut(s) 137
BmsI GCATC 3 cut(s) 271, 339, 393
BpiI GAAGAC 1 cut(s) 27
BpmI CTGGAG 1 cut(s) 123
Bpu1102I GCTNAGC 1 cut(s) 186
BsaHI GRCGYC 1 cut(s) 39
BsaWI WCCGGW 1 cut(s) 129
Bsc4I CCNNNNNNNGG 2 cut(s) 136, 142
Bse3DI GCAATG 1 cut(s) 216
BseBI CCWGG 1 cut(s) 137
BseGI GGATG 1 cut(s) 286
BseLI CCNNNNNNNGG 2 cut(s) 136, 142
BseMI GCAATG 1 cut(s) 216
BseMII CTCAG 2 cut(s) 28, 177
BseXI GCAGC 1 cut(s) 183
BsgI GTGCAG 2 cut(s) 53, 134
BshFI GGCC 2 cut(s) 268, 311
BsiHKAI GWGCWC 4 cut(s) 15, 192, 216, 457
BsiSI CCGG 2 cut(s) 130, 269
BslI CCNNNNNNNGG 2 cut(s) 136, 142
BsmAI GTCTC 2 cut(s) 171, 375
BsmBI CGTCTC 1 cut(s) 171
BsnI GGCC 2 cut(s) 268, 311
Bsp1286I GDGCHC 4 cut(s) 15, 192, 216, 457
Bsp143I GATC 2 cut(s) 376, 427
Bsp1720I GCTNAGC 1 cut(s) 186
BspACI CCGC 4 cut(s) 6, 143, 221, 407
BspANI GGCC 2 cut(s) 268, 311
BspCNI CTCAG 2 cut(s) 27, 178
BspHI TCATGA 1 cut(s) 373
BspLI GGNNCC 1 cut(s) 134
BspPI GGATC 2 cut(s) 371, 435
BsrDI GCAATG 1 cut(s) 216
BssMI GATC 2 cut(s) 376, 427
BssNI GRCGYC 1 cut(s) 39
BssSI CACGAG 2 cut(s) 191, 441
Bst2BI CACGAG 2 cut(s) 191, 441
Bst2UI CCWGG 1 cut(s) 137
Bst4CI ACNGT 1 cut(s) 211
BstACI GRCGYC 1 cut(s) 39
BstDEI CTNAG 2 cut(s) 14, 186
BstF5I GGATG 1 cut(s) 286
BstKTI GATC 2 cut(s) 379, 430
BstMAI GTCTC 2 cut(s) 171, 375
BstMBI GATC 2 cut(s) 376, 427
BstMWI GCNNNNNNNGC 1 cut(s) 196
BstNI CCWGG 1 cut(s) 137
BstSCI CCNGG 1 cut(s) 135
BstV1I GCAGC 1 cut(s) 183
BstV2I GAAGAC 1 cut(s) 27
BsuI GTATCC 1 cut(s) 367
BsuRI GGCC 2 cut(s) 268, 311
BtrI CACGTC 1 cut(s) 73
BtsCI GGATG 1 cut(s) 286
BtsIMutI CAGTG 1 cut(s) 216
CciI TCATGA 1 cut(s) 373
Cfr13I GGNCC 2 cut(s) 223, 266
CseI GACGC 1 cut(s) 47
CsiI ACCWGGT 1 cut(s) 135
CviAII CATG 3 cut(s) 247, 374, 410
CviJI RGCY 8 cut(s) 13, 65, 185, 190, 252, 268, 311, 455
CviKI_1 RGCY 8 cut(s) 13, 65, 185, 190, 252, 268, 311, 455
DdeI CTNAG 2 cut(s) 14, 186
DpnI GATC 2 cut(s) 378, 429
DpnII GATC 2 cut(s) 376, 427
EaeI YGGCCR 1 cut(s) 309
Ecl136II GAGCTC 3 cut(s) 13, 190, 455
Eco24I GRGCYC 3 cut(s) 15, 192, 457
Eco47I GGWCC 1 cut(s) 223
Eco53kI GAGCTC 3 cut(s) 13, 190, 455
EcoICRI GAGCTC 3 cut(s) 13, 190, 455
EcoRII CCWGG 1 cut(s) 135
EcoT22I ATGCAT 1 cut(s) 286
EcoT38I GRGCYC 3 cut(s) 15, 192, 457
Esp3I CGTCTC 1 cut(s) 171
FaeI CATG 3 cut(s) 250, 377, 413
FatI CATG 3 cut(s) 246, 373, 409
Fnu4HI GCNGC 2 cut(s) 197, 407
FokI GGATG 1 cut(s) 293
FriOI GRGCYC 3 cut(s) 15, 192, 457
Fsp4HI GCNGC 2 cut(s) 197, 407
FspBI CTAG 4 cut(s) 62, 174, 492, 509
GluI GCNGC 2 cut(s) 197, 407
GsuI CTGGAG 1 cut(s) 123
HaeIII GGCC 2 cut(s) 268, 311
HapII CCGG 2 cut(s) 130, 269
HgaI GACGC 1 cut(s) 47
Hin1I GRCGYC 1 cut(s) 39
Hin1II CATG 3 cut(s) 250, 377, 413
HinfI GANTC 1 cut(s) 113
HpaII CCGG 2 cut(s) 130, 269
HphI GGTGA 2 cut(s) 286, 471
Hpy166II GTNNAC 2 cut(s) 46, 448
Hpy188I TCNGA 4 cut(s) 17, 121, 459, 472
Hpy188III TCNNGA 3 cut(s) 102, 332, 374
Hpy8I GTNNAC 2 cut(s) 46, 448
Hpy99I CGWCG 1 cut(s) 41
HpyAV CCTTC 1 cut(s) 418
HpyCH4III ACNGT 1 cut(s) 211
HpyCH4IV ACGT 2 cut(s) 72, 180
HpyCH4V TGCA 4 cut(s) 70, 151, 236, 284
HpyF10VI GCNNNNNNNGC 1 cut(s) 196
HpyF3I CTNAG 2 cut(s) 14, 186
HpySE526I ACGT 2 cut(s) 72, 180
Hsp92I GRCGYC 1 cut(s) 39
Hsp92II CATG 3 cut(s) 250, 377, 413
Kzo9I GATC 2 cut(s) 376, 427
LpnPI CCDG 8 cut(s) 87, 122, 139, 143, 149, 266, 282, 374
Lsp1109I GCAGC 1 cut(s) 183
LweI GCATC 3 cut(s) 271, 339, 393
MabI ACCWGGT 1 cut(s) 135
MaeI CTAG 4 cut(s) 62, 174, 492, 509
MaeII ACGT 2 cut(s) 72, 180
MaeIII GTNAC 1 cut(s) 477
MalI GATC 2 cut(s) 378, 429
MboI GATC 2 cut(s) 376, 427
MboII GAAGA 4 cut(s) 32, 108, 169, 412
MhlI GDGCHC 4 cut(s) 15, 192, 216, 457
MlsI TGGCCA 1 cut(s) 311
MluCI AATT 4 cut(s) 237, 293, 361, 496
MluNI TGGCCA 1 cut(s) 311
MnlI CCTC 3 cut(s) 176, 265, 492
Mox20I TGGCCA 1 cut(s) 311
Mph1103I ATGCAT 1 cut(s) 286
MscI TGGCCA 1 cut(s) 311
MseI TTAA 3 cut(s) 243, 417, 437
Msp20I TGGCCA 1 cut(s) 311
MspI CCGG 2 cut(s) 130, 269
MspR9I CCNGG 1 cut(s) 137
MvaI CCWGG 1 cut(s) 137
MwoI GCNNNNNNNGC 1 cut(s) 196
NdeII GATC 2 cut(s) 376, 427
NlaIII CATG 3 cut(s) 250, 377, 413
NlaIV GGNNCC 1 cut(s) 134
NmeAIII GCCGAG 1 cut(s) 34
NmuCI GTSAC 1 cut(s) 477
NsiI ATGCAT 1 cut(s) 286
PagI TCATGA 1 cut(s) 373
PfeI GAWTC 1 cut(s) 113
PkrI GCNGC 2 cut(s) 198, 408
Psp124BI GAGCTC 3 cut(s) 15, 192, 457
Psp6I CCWGG 1 cut(s) 135
PspGI CCWGG 1 cut(s) 135
PspN4I GGNNCC 1 cut(s) 134
PspPI GGNCC 2 cut(s) 223, 266
SacI GAGCTC 3 cut(s) 15, 192, 457
SaqAI TTAA 3 cut(s) 243, 417, 437
SatI GCNGC 2 cut(s) 197, 407
Sau3AI GATC 2 cut(s) 376, 427
Sau96I GGNCC 2 cut(s) 223, 266
ScrFI CCNGG 1 cut(s) 137
SduI GDGCHC 4 cut(s) 15, 192, 216, 457
SexAI ACCWGGT 1 cut(s) 135
SfaNI GCATC 3 cut(s) 271, 339, 393
SinI GGWCC 1 cut(s) 223
SpeI ACTAGT 1 cut(s) 508
Sse9I AATT 4 cut(s) 237, 293, 361, 496
SsiI CCGC 4 cut(s) 6, 143, 221, 407
SspMI CTAG 4 cut(s) 62, 174, 492, 509
SstI GAGCTC 3 cut(s) 15, 192, 457
StyD4I CCNGG 1 cut(s) 135
TaaI ACNGT 1 cut(s) 211
TaiI ACGT 2 cut(s) 75, 183
TasI AATT 4 cut(s) 237, 293, 361, 496
TauI GCSGC 1 cut(s) 409
TfiI GAWTC 1 cut(s) 113
Tru1I TTAA 3 cut(s) 243, 417, 437
Tru9I TTAA 3 cut(s) 243, 417, 437
TscAI CASTG 1 cut(s) 216
TseFI GTSAC 1 cut(s) 477
TseI GCWGC 1 cut(s) 196
Tsp45I GTSAC 1 cut(s) 477
TspDTI ATGAA 1 cut(s) 47
TspRI CASTG 1 cut(s) 216
VpaK11BI GGWCC 1 cut(s) 223
XapI RAATTY 1 cut(s) 496
XspI CTAG 4 cut(s) 62, 174, 492, 509
Zsp2I ATGCAT 1 cut(s) 286
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.