Rh2CG112900

RNA polymerase I-specific transcription initiation factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
OG0004110
Physical Location & Seq
Reverse (-)
9934172 .. 9934843
672 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG112900.1

Sequence Viewer

Length: 360 bp
ATGAACGACGCCGTTTACTCCGAGTATGACCTAGCTCTGCACGTCAAGGAAGTTCTCGTTTCGTTCTCATCTGGAGATGTTGAATCTTCTGAAAACTACCGGAACCTGGTTGCGGTTCTGCACAGGAAGAAAAACCTCTCCCCTAGAGACGTAGCTGAGCTCGTGGCAATTTTGAAAGGACTATCCAGCGCAGCTGCTTATATTGACAGTGCTCATTGCGACCTCTACTCTGCAATTTTTAACATGAGCCTGTGGAACTATGGACCGGAGGTGATGGATGCATTGATTGAATTGATTATTGCTTTGGTAAGTGAGTTTATGTTGTTCTGCAATTGTCATCTTTTAAAACAATGGTTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RRN3

Protein Analysis

119

Amino Acids

13.37

Weight (kDa)

4.85

Isoelectric Point (pI)

43.72

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RRN3 PF05327 12 - 107 1.9e-09 RNA polymerase I specific transcription initiation factor RRN3
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 113
AcyI GRCGYC 1 cut(s) 9
AfiI CCNNNNNNNGG 2 cut(s) 106, 112
AgsI TTSAA 3 cut(s) 83, 175, 290
AjiI CACGTC 1 cut(s) 43
AjnI CCWGG 1 cut(s) 105
AluBI AGCT 4 cut(s) 35, 155, 160, 194
AluI AGCT 4 cut(s) 35, 155, 160, 194
Alw21I GWGCWC 2 cut(s) 162, 214
Alw26I GTCTC 1 cut(s) 141
ApeKI GCWGC 2 cut(s) 191, 194
AspLEI GCGC 1 cut(s) 191
AspS9I GGNCC 1 cut(s) 263
AsuHPI GGTGA 1 cut(s) 283
AvaII GGWCC 1 cut(s) 263
BanII GRGCYC 1 cut(s) 162
BauI CACGAG 1 cut(s) 161
Bbv12I GWGCWC 2 cut(s) 162, 214
BbvI GCAGC 2 cut(s) 181, 203
BccI CCATC 1 cut(s) 268
BciT130I CCWGG 1 cut(s) 107
BcoDI GTCTC 1 cut(s) 141
BfaI CTAG 2 cut(s) 32, 144
BisI GCNGC 2 cut(s) 192, 195
BlpI GCTNAGC 1 cut(s) 156
BlsI GCNGC 2 cut(s) 193, 196
Bme1390I CCNGG 1 cut(s) 107
Bme18I GGWCC 1 cut(s) 263
BmgBI CACGTC 1 cut(s) 43
BmgT120I GGNCC 1 cut(s) 263
BmiI GGNNCC 1 cut(s) 104
BmrFI CCNGG 1 cut(s) 107
BmsI GCATC 1 cut(s) 268
BpmI CTGGAG 1 cut(s) 93
Bpu1102I GCTNAGC 1 cut(s) 156
BsaHI GRCGYC 1 cut(s) 9
BsaWI WCCGGW 2 cut(s) 99, 265
Bsc4I CCNNNNNNNGG 2 cut(s) 106, 112
Bse3DI GCAATG 1 cut(s) 214
BseBI CCWGG 1 cut(s) 107
BseGI GGATG 1 cut(s) 283
BseLI CCNNNNNNNGG 2 cut(s) 106, 112
BseMI GCAATG 1 cut(s) 214
BseMII CTCAG 1 cut(s) 147
BseXI GCAGC 2 cut(s) 181, 203
BsgI GTGCAG 2 cut(s) 23, 104
BsiHKAI GWGCWC 2 cut(s) 162, 214
BsiSI CCGG 2 cut(s) 100, 266
BslI CCNNNNNNNGG 2 cut(s) 106, 112
BsmAI GTCTC 1 cut(s) 141
BsmBI CGTCTC 1 cut(s) 141
Bsp1286I GDGCHC 2 cut(s) 162, 214
Bsp1720I GCTNAGC 1 cut(s) 156
BspACI CCGC 1 cut(s) 113
BspCNI CTCAG 1 cut(s) 148
BspLI GGNNCC 1 cut(s) 104
BsrDI GCAATG 1 cut(s) 214
BssNI GRCGYC 1 cut(s) 9
BssSI CACGAG 1 cut(s) 161
Bst2BI CACGAG 1 cut(s) 161
Bst2UI CCWGG 1 cut(s) 107
Bst4CI ACNGT 1 cut(s) 209
BstACI GRCGYC 1 cut(s) 9
BstDEI CTNAG 1 cut(s) 156
BstF5I GGATG 1 cut(s) 283
BstHHI GCGC 1 cut(s) 191
BstMAI GTCTC 1 cut(s) 141
BstNI CCWGG 1 cut(s) 107
BstSCI CCNGG 1 cut(s) 105
BstV1I GCAGC 2 cut(s) 181, 203
BtrI CACGTC 1 cut(s) 43
BtsCI GGATG 1 cut(s) 283
BtsIMutI CAGTG 1 cut(s) 214
CfoI GCGC 1 cut(s) 191
Cfr13I GGNCC 1 cut(s) 263
CseI GACGC 1 cut(s) 17
CsiI ACCWGGT 1 cut(s) 105
CviAII CATG 1 cut(s) 244
CviJI RGCY 5 cut(s) 35, 155, 160, 194, 249
CviKI_1 RGCY 5 cut(s) 35, 155, 160, 194, 249
DdeI CTNAG 1 cut(s) 156
DraI TTTAAA 1 cut(s) 345
Ecl136II GAGCTC 1 cut(s) 160
Eco24I GRGCYC 1 cut(s) 162
Eco47I GGWCC 1 cut(s) 263
Eco53kI GAGCTC 1 cut(s) 160
EcoICRI GAGCTC 1 cut(s) 160
EcoRII CCWGG 1 cut(s) 105
EcoT22I ATGCAT 1 cut(s) 283
EcoT38I GRGCYC 1 cut(s) 162
Esp3I CGTCTC 1 cut(s) 141
FaeI CATG 1 cut(s) 247
FaiI YATR 5 cut(s) 27, 201, 245, 261, 320
FatI CATG 1 cut(s) 243
Fnu4HI GCNGC 2 cut(s) 192, 195
FokI GGATG 1 cut(s) 290
FriOI GRGCYC 1 cut(s) 162
Fsp4HI GCNGC 2 cut(s) 192, 195
FspBI CTAG 2 cut(s) 32, 144
GlaI GCGC 1 cut(s) 190
GluI GCNGC 2 cut(s) 192, 195
GsuI CTGGAG 1 cut(s) 93
HapII CCGG 2 cut(s) 100, 266
HgaI GACGC 1 cut(s) 17
HhaI GCGC 1 cut(s) 191
Hin1I GRCGYC 1 cut(s) 9
Hin1II CATG 1 cut(s) 247
Hin6I GCGC 1 cut(s) 189
HinP1I GCGC 1 cut(s) 189
HinfI GANTC 1 cut(s) 83
HpaII CCGG 2 cut(s) 100, 266
HphI GGTGA 1 cut(s) 283
Hpy166II GTNNAC 1 cut(s) 16
Hpy188I TCNGA 2 cut(s) 22, 91
Hpy188III TCNNGA 1 cut(s) 72
Hpy8I GTNNAC 1 cut(s) 16
Hpy99I CGWCG 1 cut(s) 11
HpyCH4III ACNGT 1 cut(s) 209
HpyCH4IV ACGT 2 cut(s) 42, 150
HpyCH4V TGCA 5 cut(s) 40, 121, 233, 281, 330
HpyF3I CTNAG 1 cut(s) 156
HpySE526I ACGT 2 cut(s) 42, 150
Hsp92I GRCGYC 1 cut(s) 9
Hsp92II CATG 1 cut(s) 247
HspAI GCGC 1 cut(s) 189
LpnPI CCDG 8 cut(s) 57, 92, 109, 113, 119, 199, 263, 279
Lsp1109I GCAGC 2 cut(s) 181, 203
LweI GCATC 1 cut(s) 268
MabI ACCWGGT 1 cut(s) 105
MaeI CTAG 2 cut(s) 32, 144
MaeII ACGT 2 cut(s) 42, 150
MboII GAAGA 2 cut(s) 78, 139
MfeI CAATTG 1 cut(s) 331
MhlI GDGCHC 2 cut(s) 162, 214
MluCI AATT 4 cut(s) 168, 234, 290, 331
MnlI CCTC 3 cut(s) 146, 233, 262
Mph1103I ATGCAT 1 cut(s) 283
MseI TTAA 2 cut(s) 240, 344
MspA1I CMGCKG 1 cut(s) 194
MspI CCGG 2 cut(s) 100, 266
MspR9I CCNGG 1 cut(s) 107
MunI CAATTG 1 cut(s) 331
MvaI CCWGG 1 cut(s) 107
NlaIII CATG 1 cut(s) 247
NlaIV GGNNCC 1 cut(s) 104
NsiI ATGCAT 1 cut(s) 283
PfeI GAWTC 1 cut(s) 83
PkrI GCNGC 2 cut(s) 193, 196
Psp124BI GAGCTC 1 cut(s) 162
Psp6I CCWGG 1 cut(s) 105
PspGI CCWGG 1 cut(s) 105
PspN4I GGNNCC 1 cut(s) 104
PspPI GGNCC 1 cut(s) 263
PvuII CAGCTG 1 cut(s) 194
SacI GAGCTC 1 cut(s) 162
SaqAI TTAA 2 cut(s) 240, 344
SatI GCNGC 2 cut(s) 192, 195
Sau96I GGNCC 1 cut(s) 263
ScrFI CCNGG 1 cut(s) 107
SduI GDGCHC 2 cut(s) 162, 214
SexAI ACCWGGT 1 cut(s) 105
SfaNI GCATC 1 cut(s) 268
SinI GGWCC 1 cut(s) 263
Sse9I AATT 4 cut(s) 168, 234, 290, 331
SsiI CCGC 1 cut(s) 113
SspMI CTAG 2 cut(s) 32, 144
SstI GAGCTC 1 cut(s) 162
StyD4I CCNGG 1 cut(s) 105
TaaI ACNGT 1 cut(s) 209
TaiI ACGT 2 cut(s) 45, 153
TasI AATT 4 cut(s) 168, 234, 290, 331
TfiI GAWTC 1 cut(s) 83
Tru1I TTAA 2 cut(s) 240, 344
Tru9I TTAA 2 cut(s) 240, 344
TscAI CASTG 1 cut(s) 214
TseI GCWGC 2 cut(s) 191, 194
TspDTI ATGAA 1 cut(s) 17
TspRI CASTG 1 cut(s) 214
VpaK11BI GGWCC 1 cut(s) 263
XspI CTAG 2 cut(s) 32, 144
Zsp2I ATGCAT 1 cut(s) 283
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.