FvH4_1g10010

RNA polymerase I-specific transcription initiation factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0004110
Physical Location & Seq
Reverse (-)
5438345 .. 5443506
5162 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g10010.t2

Sequence Viewer

Length: 1887 bp
ATGGGCGTCGAACTCGGGCAAGACCTCGATATGAACGACGACGGCGGTTACTCCGACTACGACCTAGCTCTGCACGTCAAGGATGTTCTCCTCTCAGTCTCATCTGGCGATGTTGTGTCTGTTGAGAACTACAGAGAGCTCGTCGGTCGTCTGTACCGGCCAGCACGGCACTCTCCCGATGACGTCGCCAAGCTCGTGGCTAGCTTGAAGGGACTGTCCGGCGCAGCTTCTTATATTGACAGTGCTGTACACGTTGGCCTTCTCAATCCGCTTTTCGAGATGAGCTTGTGGAACTATGGGCCTGATGTGATGGACGCGTTGATTGAGTTGATTATTTCCTTGGCTGCTTCAAGTGGGAAGTATGTTGATCTATGCCTGGCTATGCTTACACGCCATTTCGAGACGCCTCCACGTTTCCTGGAGAAGTTGAAGTTGCCCTATGGCCTTACAAAGAAGGACCAAGTTTTATCTCGTGTGCATTCAGCTCTTAAAGATATATCTGAGGTGGTTCCGCTTTCCCCTGCAAGAATGGTGACTATAGTTTCTGATCATCTAGAGCTATATCGCCAAAAGAGGGGAACTAGTACACATGGTCTTGTGATATTCGTAGAGAACATGTTAAAGTTGGAGGGTGGTGCACTTAGCGAAGTCGTTCGAGTTTCCATGCTCACGAAGGTGGTGGAATTGCTGCTGCATTTGGATGTTGAAATGGGATCATGGGACAAAGTGTTACAAGATCATGGAATATTTCAGATGGAGCTAGAAGATGTGGATGACTTCTCAGAAGATTTCCTGAATGATGGTACAGAGCAAGCAAGAGAAGCAACTATAAACGGTGTAACTTTGAAAAGTTCTGCTGAAAAGTTGGATACCTTGATTGTGTTAACTTTTGAGCACCTTGAATCCTGTGAAGCTAGTGGCCGATTGAGTGAGGTCTTCAAAACTCTTCTCGAGACATTTAGGAACAAAGTTCTGACCACATGCAAGTCAAAGTTTGTCCAGTTTGTGATGTTTTATGCCTGTGCTCTTGATCCTGTAAACTGTGGTGAGGAATTTGCCACAAACCTTGTCGAAATTTTTGTTTACGATGCCAACCTCACATCTCTCAGGATGAGAGCTGTTGCTTACCTTGCTAGCTACTTGTCACGAGCGATGTTTATGTCGGCCTCTGTAGTTGCGCAAACCTTAAAAAGGTTGGTGGGCTGGTGTTTTAATTTTGTCAAAACGAAGAAAGGTGGAGTAAACCCAGAGAACGATAAACTATTTTATGCTGCATGTCAGGCCATCATGTATTTGCTGTGCTTCCGAATGAGATCTTTGATGGATGATCCTCAATCCAAGTCATTGCTTGCTGGTCTACCTTTAGAGTCCATTTTGAGCACTCAAATTAGCCCATTGAAGGCGTGTGTGCCTTCCATAGTGAAGGAGTTCTTATGGCAAGCGAATGCTGCTGGCTTAATCACGGCTGATGAATTTGATTTTGATGATGATCTGGAATCAGAATATTCATGGGTGTGGGGTGGAAAGGAAGAGCTTCACAAGTTGTTCCCTTTTGACCCATGTTTGCTAAGAAATAGTGACAGATTCATACGGCCCAATTTCATATACTGGTCAATGGTTCAACGAACATATGACGATGAGGACAAAGAAGGTTCCAGCGATGAAGATGGTGACGAAGCTTTTGCGGTTGACAATGAGGAGAATGTGATGGATTACGAGATATTGCAATGCTTGGAGGAACAACAATTCGGTGAAGTCGACAATGCATTAAACAAAATGTCCATCACACCAAAGGATTCGTTACACAGCAGATTCGGTGGTGCGGTAAATAAACCCATGCGAATGCCCTCGCAAATTAGACCGTCCACAAGTCCAGAGTCTTTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RRN3

Protein Analysis

629

Amino Acids

70.43

Weight (kDa)

4.75

Isoelectric Point (pI)

38.37

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RRN3 PF05327 4 - 478 3.3e-100 RNA polymerase I specific transcription initiation factor RRN3
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 186
Acc16I TGCGCA 1 cut(s) 1179
AccI GTMKAC 2 cut(s) 1357, 1758
AccII CGCG 1 cut(s) 317
AciI CCGC 5 cut(s) 45, 269, 512, 1685, 1823
AclWI GGATC 3 cut(s) 721, 1025, 1322
AcoI YGGCCR 2 cut(s) 158, 919
AcsI RAATTY 3 cut(s) 1052, 1074, 1472
AcyI GRCGYC 3 cut(s) 6, 183, 404
AfaI GTAC 4 cut(s) 155, 249, 586, 805
AfiI CCNNNNNNNGG 3 cut(s) 574, 1191, 1399
AflIII ACRYGT 3 cut(s) 250, 315, 615
AgsI TTSAA 9 cut(s) 208, 351, 430, 707, 847, 902, 940, 1399, 1622
AhlI ACTAGT 1 cut(s) 581
AjiI CACGTC 1 cut(s) 76
AjnI CCWGG 2 cut(s) 375, 417
AleI CACNNNNGTG 1 cut(s) 674
Alw21I GWGCWC 5 cut(s) 141, 640, 897, 1027, 1382
Alw26I GTCTC 3 cut(s) 103, 395, 947
Alw44I GTGCAC 1 cut(s) 636
AlwI GGATC 3 cut(s) 721, 1025, 1322
Ama87I CYCGRG 2 cut(s) 14, 950
AoxI GGCC 8 cut(s) 158, 256, 299, 442, 919, 1164, 1281, 1592
ApaLI GTGCAC 1 cut(s) 636
ApeKI GCWGC 6 cut(s) 224, 344, 688, 691, 1271, 1448
ApoI RAATTY 3 cut(s) 1052, 1074, 1472
ArsI GACNNNNNNTTYG 2 cut(s) 1664, 1696
Asp700I GAANNNNTTC 3 cut(s) 651, 1427, 1533
AspLEI GCGC 2 cut(s) 224, 1180
AspS9I GGNCC 3 cut(s) 299, 457, 1593
AsuHPI GGTGA 4 cut(s) 544, 1058, 1682, 1763
AsuNHI GCTAGC 2 cut(s) 200, 1133
AvaI CYCGRG 2 cut(s) 14, 950
AvaII GGWCC 1 cut(s) 457
BaeGI GKGCMC 1 cut(s) 640
BanII GRGCYC 1 cut(s) 141
BauI CACGAG 3 cut(s) 194, 471, 1146
BbsI GAAGAC 1 cut(s) 928
Bbv12I GWGCWC 5 cut(s) 141, 640, 897, 1027, 1382
BbvI GCAGC 6 cut(s) 236, 331, 675, 678, 1258, 1435
BccI CCATC 8 cut(s) 304, 748, 794, 1292, 1315, 1661, 1702, 1790
BceAI ACGGC 4 cut(s) 58, 182, 1479, 1607
BcgI CGANNNNNNTGC 2 cut(s) 1664, 1698
BciT130I CCWGG 2 cut(s) 377, 419
BciVI GTATCC 1 cut(s) 862
BclI TGATCA 1 cut(s) 547
BcoDI GTCTC 3 cut(s) 103, 395, 947
BcuI ACTAGT 1 cut(s) 581
BfaI CTAG 7 cut(s) 65, 201, 554, 582, 761, 915, 1134
BfmI CTRYAG 3 cut(s) 130, 537, 1170
BfuI GTATCC 1 cut(s) 862
BglI GCCNNNNNGGC 1 cut(s) 166
BglII AGATCT 1 cut(s) 1313
BisI GCNGC 6 cut(s) 225, 345, 689, 692, 1272, 1449
BlsI GCNGC 6 cut(s) 226, 346, 690, 693, 1273, 1450
Bme1390I CCNGG 2 cut(s) 377, 419
Bme18I GGWCC 1 cut(s) 457
BmeT110I CYCGRG 2 cut(s) 14, 950
BmgBI CACGTC 1 cut(s) 76
BmgT120I GGNCC 3 cut(s) 299, 457, 1593
BmiI GGNNCC 2 cut(s) 510, 1654
BmrFI CCNGG 2 cut(s) 377, 419
BmsI GCATC 1 cut(s) 1078
BmtI GCTAGC 2 cut(s) 204, 1137
BpiI GAAGAC 1 cut(s) 928
BpmI CTGGAG 1 cut(s) 440
BsaBI GATNNNNATC 1 cut(s) 1488
BsaHI GRCGYC 3 cut(s) 6, 183, 404
BsaJI CCNNGG 1 cut(s) 339
Bsc4I CCNNNNNNNGG 3 cut(s) 574, 1191, 1399
Bse118I RCCGGY 1 cut(s) 156
Bse1I ACTGG 2 cut(s) 1000, 1613
Bse3DI GCAATG 2 cut(s) 1343, 1733
Bse8I GATNNNNATC 1 cut(s) 1488
BseBI CCWGG 2 cut(s) 377, 419
BseDI CCNNGG 1 cut(s) 339
BseGI GGATG 5 cut(s) 88, 706, 778, 1116, 1330
BseJI GATNNNNATC 1 cut(s) 1488
BseLI CCNNNNNNNGG 3 cut(s) 574, 1191, 1399
BseMI GCAATG 2 cut(s) 1343, 1733
BseMII CTCAG 4 cut(s) 108, 492, 795, 1120
BseNI ACTGG 2 cut(s) 1000, 1613
BseRI GAGGAG 2 cut(s) 80, 1712
BseSI GKGCMC 1 cut(s) 640
BseXI GCAGC 6 cut(s) 236, 331, 675, 678, 1258, 1435
BsgI GTGCAG 1 cut(s) 56
Bsh1236I CGCG 1 cut(s) 317
Bsh1285I CGRYCG 1 cut(s) 148
BshFI GGCC 8 cut(s) 160, 258, 301, 444, 921, 1166, 1283, 1594
BsiEI CGRYCG 1 cut(s) 148
BsiHKAI GWGCWC 5 cut(s) 141, 640, 897, 1027, 1382
BsiHKCI CYCGRG 2 cut(s) 14, 950
BsiSI CCGG 2 cut(s) 157, 219
BslFI GGGAC 2 cut(s) 225, 734
BslI CCNNNNNNNGG 3 cut(s) 574, 1191, 1399
BsmAI GTCTC 3 cut(s) 103, 395, 947
BsmBI CGTCTC 1 cut(s) 395
BsmFI GGGAC 2 cut(s) 225, 734
BsmI GAATGC 3 cut(s) 478, 1450, 1848
BsnI GGCC 8 cut(s) 160, 258, 301, 444, 921, 1166, 1283, 1594
BsoBI CYCGRG 2 cut(s) 14, 950
Bsp1286I GDGCHC 5 cut(s) 141, 640, 897, 1027, 1382
Bsp1407I TGTACA 1 cut(s) 247
Bsp143I GATC 8 cut(s) 367, 547, 713, 736, 1030, 1313, 1327, 1489
BspACI CCGC 5 cut(s) 45, 269, 512, 1685, 1823
BspANI GGCC 8 cut(s) 160, 258, 301, 444, 921, 1166, 1283, 1594
BspCNI CTCAG 4 cut(s) 107, 493, 794, 1119
BspFNI CGCG 1 cut(s) 317
BspLI GGNNCC 2 cut(s) 510, 1654
BspOI GCTAGC 2 cut(s) 204, 1137
BspPI GGATC 3 cut(s) 721, 1025, 1322
BspQI GCTCTTC 1 cut(s) 1524
BsrDI GCAATG 2 cut(s) 1343, 1733
BsrFI RCCGGY 1 cut(s) 156
BsrGI TGTACA 1 cut(s) 247
BsrI ACTGG 2 cut(s) 1000, 1613
BssAI RCCGGY 1 cut(s) 156
BssECI CCNNGG 1 cut(s) 339
BssMI GATC 8 cut(s) 367, 547, 713, 736, 1030, 1313, 1327, 1489
BssNI GRCGYC 3 cut(s) 6, 183, 404
BssSI CACGAG 3 cut(s) 194, 471, 1146
BssT1I CCWWGG 1 cut(s) 339
Bst2BI CACGAG 3 cut(s) 194, 471, 1146
Bst2UI CCWGG 2 cut(s) 377, 419
Bst4CI ACNGT 5 cut(s) 216, 242, 836, 1043, 1863
Bst6I CTCTTC 2 cut(s) 951, 1524
BstACI GRCGYC 3 cut(s) 6, 183, 404
BstAUI TGTACA 1 cut(s) 247
BstC8I GCNNGC 7 cut(s) 162, 202, 813, 1135, 1350, 1440, 1453
BstDEI CTNAG 6 cut(s) 94, 501, 641, 781, 1106, 1568
BstENI CCTNNNNNAGG 1 cut(s) 1189
BstF5I GGATG 5 cut(s) 88, 706, 778, 1116, 1330
BstFNI CGCG 1 cut(s) 317
BstHHI GCGC 2 cut(s) 224, 1180
BstKTI GATC 8 cut(s) 370, 550, 716, 739, 1033, 1316, 1330, 1492
BstMAI GTCTC 3 cut(s) 103, 395, 947
BstMBI GATC 8 cut(s) 367, 547, 713, 736, 1030, 1313, 1327, 1489
BstMCI CGRYCG 1 cut(s) 148
BstMWI GCNNNNNNNGC 5 cut(s) 166, 821, 1130, 1280, 1448
BstNI CCWGG 2 cut(s) 377, 419
BstNSI RCATGY 3 cut(s) 619, 984, 1278
BstSCI CCNGG 2 cut(s) 375, 417
BstSFI CTRYAG 3 cut(s) 130, 537, 1170
BstSLI GKGCMC 1 cut(s) 640
BstUI CGCG 1 cut(s) 317
BstV1I GCAGC 6 cut(s) 236, 331, 675, 678, 1258, 1435
BstV2I GAAGAC 1 cut(s) 928
BstX2I RGATCY 1 cut(s) 1313
BstXI CCANNNNNNTGG 1 cut(s) 196
BstYI RGATCY 1 cut(s) 1313
BsuI GTATCC 1 cut(s) 862
BsuRI GGCC 8 cut(s) 160, 258, 301, 444, 921, 1166, 1283, 1594
BtgZI GCGATG 3 cut(s) 123, 1166, 1674
BtrI CACGTC 1 cut(s) 76
BtsCI GGATG 5 cut(s) 88, 706, 778, 1116, 1330
BtsIMutI CAGTG 1 cut(s) 247
Cac8I GCNNGC 7 cut(s) 162, 202, 813, 1135, 1350, 1440, 1453
CfoI GCGC 2 cut(s) 224, 1180
Cfr10I RCCGGY 1 cut(s) 156
Cfr13I GGNCC 3 cut(s) 299, 457, 1593
CseI GACGC 2 cut(s) 323, 412
Csp6I GTAC 4 cut(s) 154, 248, 585, 804
CspCI CAANNNNNGTGG 2 cut(s) 1048, 1083
CviQI GTAC 4 cut(s) 154, 248, 585, 804
DdeI CTNAG 6 cut(s) 94, 501, 641, 781, 1106, 1568
DpnI GATC 8 cut(s) 369, 549, 715, 738, 1032, 1315, 1329, 1491
DpnII GATC 8 cut(s) 367, 547, 713, 736, 1030, 1313, 1327, 1489
EaeI YGGCCR 2 cut(s) 158, 919
Eam1104I CTCTTC 2 cut(s) 951, 1524
EarI CTCTTC 2 cut(s) 951, 1524
Ecl136II GAGCTC 1 cut(s) 139
Eco130I CCWWGG 1 cut(s) 339
Eco24I GRGCYC 1 cut(s) 141
Eco47I GGWCC 1 cut(s) 457
Eco53kI GAGCTC 1 cut(s) 139
Eco88I CYCGRG 2 cut(s) 14, 950
EcoICRI GAGCTC 1 cut(s) 139
EcoNI CCTNNNNNAGG 1 cut(s) 1189
EcoRII CCWGG 2 cut(s) 375, 417
EcoT14I CCWWGG 1 cut(s) 339
EcoT22I ATGCAT 1 cut(s) 1768
EcoT38I GRGCYC 1 cut(s) 141
ErhI CCWWGG 1 cut(s) 339
Esp3I CGTCTC 1 cut(s) 395
FalI AAGNNNNNCTT 2 cut(s) 1415, 1447
FaqI GGGAC 2 cut(s) 225, 734
FauNDI CATATG 1 cut(s) 1630
FbaI TGATCA 1 cut(s) 547
FblI GTMKAC 2 cut(s) 1357, 1758
Fnu4HI GCNGC 6 cut(s) 225, 345, 689, 692, 1272, 1449
FokI GGATG 5 cut(s) 95, 713, 785, 1123, 1337
FriOI GRGCYC 1 cut(s) 141
Fsp4HI GCNGC 6 cut(s) 225, 345, 689, 692, 1272, 1449
FspBI CTAG 7 cut(s) 65, 201, 554, 582, 761, 915, 1134
FspI TGCGCA 1 cut(s) 1179
GlaI GCGC 2 cut(s) 223, 1179
GluI GCNGC 6 cut(s) 225, 345, 689, 692, 1272, 1449
GsuI CTGGAG 1 cut(s) 440
HaeIII GGCC 8 cut(s) 160, 258, 301, 444, 921, 1166, 1283, 1594
HapII CCGG 2 cut(s) 157, 219
HgaI GACGC 2 cut(s) 323, 412
HhaI GCGC 2 cut(s) 224, 1180
Hin1I GRCGYC 3 cut(s) 6, 183, 404
Hin6I GCGC 2 cut(s) 222, 1178
HinP1I GCGC 2 cut(s) 222, 1178
HincII GTYRAC 3 cut(s) 885, 1690, 1759
HindII GTYRAC 3 cut(s) 885, 1690, 1759
HindIII AAGCTT 1 cut(s) 1677
HinfI GANTC 7 cut(s) 902, 1367, 1496, 1584, 1796, 1812, 1877
HpaI GTTAAC 1 cut(s) 885
HpaII CCGG 2 cut(s) 157, 219
HphI GGTGA 4 cut(s) 544, 1058, 1682, 1763
Hpy188I TCNGA 8 cut(s) 55, 502, 547, 753, 784, 975, 1307, 1501
Hpy99I CGWCG 5 cut(s) 11, 41, 44, 146, 188
HpyAV CCTTC 8 cut(s) 202, 269, 448, 667, 1393, 1417, 1422, 1643
HpyCH4III ACNGT 5 cut(s) 216, 242, 836, 1043, 1863
HpyCH4IV ACGT 4 cut(s) 75, 183, 252, 412
HpyCH4V TGCA 9 cut(s) 73, 478, 524, 638, 694, 984, 1274, 1726, 1766
HpyF10VI GCNNNNNNNGC 5 cut(s) 166, 821, 1130, 1280, 1448
HpyF3I CTNAG 6 cut(s) 94, 501, 641, 781, 1106, 1568
HpySE526I ACGT 4 cut(s) 75, 183, 252, 412
Hsp92I GRCGYC 3 cut(s) 6, 183, 404
HspAI GCGC 2 cut(s) 222, 1178
Ksp22I TGATCA 1 cut(s) 547
KspAI GTTAAC 1 cut(s) 885
Kzo9I GATC 8 cut(s) 367, 547, 713, 736, 1030, 1313, 1327, 1489
LguI GCTCTTC 1 cut(s) 1524
LmnI GCTCC 1 cut(s) 757
Lsp1109I GCAGC 6 cut(s) 236, 331, 675, 678, 1258, 1435
LweI GCATC 1 cut(s) 1078
MaeI CTAG 7 cut(s) 65, 201, 554, 582, 761, 915, 1134
MaeII ACGT 4 cut(s) 75, 183, 252, 412
MaeIII GTNAC 8 cut(s) 47, 532, 729, 838, 1143, 1577, 1670, 1800
MalI GATC 8 cut(s) 369, 549, 715, 738, 1032, 1315, 1329, 1491
MboI GATC 8 cut(s) 367, 547, 713, 736, 1030, 1313, 1327, 1489
MboII GAAGA 7 cut(s) 776, 797, 928, 938, 1240, 1541, 1676
MflI RGATCY 1 cut(s) 1313
MhlI GDGCHC 5 cut(s) 141, 640, 897, 1027, 1382
MluCI AATT 9 cut(s) 683, 1052, 1074, 1213, 1386, 1472, 1597, 1745, 1854
MluI ACGCGT 1 cut(s) 315
MlyI GAGTC 2 cut(s) 1376, 1886
MmeI TCCRAC 3 cut(s) 78, 606, 846
Mph1103I ATGCAT 1 cut(s) 1768
MroXI GAANNNNTTC 3 cut(s) 651, 1427, 1533
MseI TTAA 7 cut(s) 489, 620, 884, 1187, 1212, 1457, 1769
MslI CAYNNNNRTG 4 cut(s) 674, 699, 1513, 1841
MspI CCGG 2 cut(s) 157, 219
MspR9I CCNGG 2 cut(s) 377, 419
Mva1269I GAATGC 3 cut(s) 478, 1450, 1848
MvaI CCWGG 2 cut(s) 377, 419
MvnI CGCG 1 cut(s) 317
MwoI GCNNNNNNNGC 5 cut(s) 166, 821, 1130, 1280, 1448
NdeI CATATG 1 cut(s) 1630
NdeII GATC 8 cut(s) 367, 547, 713, 736, 1030, 1313, 1327, 1489
NheI GCTAGC 2 cut(s) 200, 1133
NlaIV GGNNCC 2 cut(s) 510, 1654
NmuCI GTSAC 4 cut(s) 532, 1143, 1577, 1670
NsbI TGCGCA 1 cut(s) 1179
NsiI ATGCAT 1 cut(s) 1768
NspI RCATGY 3 cut(s) 619, 984, 1278
OliI CACNNNNGTG 1 cut(s) 674
PaeR7I CTCGAG 1 cut(s) 950
PciI ACATGT 1 cut(s) 615
PciSI GCTCTTC 1 cut(s) 1524
PcsI WCGNNNNNNNCGW 3 cut(s) 33, 192, 1755
PctI GAATGC 3 cut(s) 478, 1450, 1848
PdmI GAANNNNTTC 3 cut(s) 651, 1427, 1533
PfeI GAWTC 5 cut(s) 902, 1496, 1584, 1796, 1812
PfoI TCCNGGA 1 cut(s) 417
PkrI GCNGC 6 cut(s) 226, 346, 690, 693, 1273, 1450
PleI GAGTC 2 cut(s) 1375, 1885
PpsI GAGTC 2 cut(s) 1375, 1885
PscI ACATGT 1 cut(s) 615
Psp124BI GAGCTC 1 cut(s) 141
Psp6I CCWGG 2 cut(s) 375, 417
PspGI CCWGG 2 cut(s) 375, 417
PspN4I GGNNCC 2 cut(s) 510, 1654
PspPI GGNCC 3 cut(s) 299, 457, 1593
PsuI RGATCY 1 cut(s) 1313
RsaI GTAC 4 cut(s) 155, 249, 586, 805
RsaNI GTAC 4 cut(s) 154, 248, 585, 804
RseI CAYNNNNRTG 4 cut(s) 674, 699, 1513, 1841
SacI GAGCTC 1 cut(s) 141
SalI GTCGAC 1 cut(s) 1757
SapI GCTCTTC 1 cut(s) 1524
SaqAI TTAA 7 cut(s) 489, 620, 884, 1187, 1212, 1457, 1769
SatI GCNGC 6 cut(s) 225, 345, 689, 692, 1272, 1449
Sau3AI GATC 8 cut(s) 367, 547, 713, 736, 1030, 1313, 1327, 1489
Sau96I GGNCC 3 cut(s) 299, 457, 1593
SchI GAGTC 2 cut(s) 1376, 1886
ScrFI CCNGG 2 cut(s) 377, 419
SduI GDGCHC 5 cut(s) 141, 640, 897, 1027, 1382
SfaNI GCATC 1 cut(s) 1078
SfcI CTRYAG 3 cut(s) 130, 537, 1170
Sfr274I CTCGAG 1 cut(s) 950
SinI GGWCC 1 cut(s) 457
SlaI CTCGAG 1 cut(s) 950
SmiMI CAYNNNNRTG 4 cut(s) 674, 699, 1513, 1841
SmlI CTYRAG 1 cut(s) 950
SmoI CTYRAG 1 cut(s) 950
SpeI ACTAGT 1 cut(s) 581
Sse9I AATT 9 cut(s) 683, 1052, 1074, 1213, 1386, 1472, 1597, 1745, 1854
SsiI CCGC 5 cut(s) 45, 269, 512, 1685, 1823
SspI AATATT 2 cut(s) 747, 1505
SspMI CTAG 7 cut(s) 65, 201, 554, 582, 761, 915, 1134
SstI GAGCTC 1 cut(s) 141
StyD4I CCNGG 2 cut(s) 375, 417
StyI CCWWGG 1 cut(s) 339
TaaI ACNGT 5 cut(s) 216, 242, 836, 1043, 1863
TaiI ACGT 4 cut(s) 78, 186, 255, 415
TaqI TCGA 8 cut(s) 9, 27, 276, 399, 655, 951, 1071, 1758
TaqII GACCGA 1 cut(s) 134
TasI AATT 9 cut(s) 683, 1052, 1074, 1213, 1386, 1472, 1597, 1745, 1854
TatI WGTACW 2 cut(s) 247, 584
TfiI GAWTC 5 cut(s) 902, 1496, 1584, 1796, 1812
Tru1I TTAA 7 cut(s) 489, 620, 884, 1187, 1212, 1457, 1769
Tru9I TTAA 7 cut(s) 489, 620, 884, 1187, 1212, 1457, 1769
TscAI CASTG 1 cut(s) 247
TseFI GTSAC 4 cut(s) 532, 1143, 1577, 1670
TseI GCWGC 6 cut(s) 224, 344, 688, 691, 1271, 1448
Tsp45I GTSAC 4 cut(s) 532, 1143, 1577, 1670
TspDTI ATGAA 6 cut(s) 47, 1485, 1497, 1576, 1591, 1677
TspRI CASTG 1 cut(s) 247
VneI GTGCAC 1 cut(s) 636
VpaK11BI GGWCC 1 cut(s) 457
XagI CCTNNNNNAGG 1 cut(s) 1189
XapI RAATTY 3 cut(s) 1052, 1074, 1472
XbaI TCTAGA 1 cut(s) 553
XceI RCATGY 3 cut(s) 619, 984, 1278
XhoI CTCGAG 1 cut(s) 950
XmiI GTMKAC 2 cut(s) 1357, 1758
XmnI GAANNNNTTC 3 cut(s) 651, 1427, 1533
XspI CTAG 7 cut(s) 65, 201, 554, 582, 761, 915, 1134
ZraI GACGTC 1 cut(s) 184
Zsp2I ATGCAT 1 cut(s) 1768
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.