RNA polymerase I-specific transcription initiation factor
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G30590 AT1G30590 AT1G30590 AT2G34750 AT2G39240 AT2G39240 |
| fragaria_vesca | FvH4_1g10010 FvH4_1g10010 |
| malus_domestica | MD02G1108900.v1.1 |
| prunus_persica | Prupe.7G186400_v2.0.a1 Prupe.7G186400_v2.0.a1 |
| pyrus_communis | pycom02g08740 pycom15g20300 |
| rosa_chinensis | RchiOBHm_Chr2g0096801 RchiOBHm_Chr2g0096841 |
| rosa_laevigata | RLG00000016671 RLG00000016673 |
| rosa_multiflora | Rmu_co8477279.1_g000001 Rmu_ssc0000215.1_g000029 |
| rosa_roxburghii | Rroxscaffold_2G00145270 Rroxscaffold_2G00145300 |
| rosa_rugosa | Rorug02G0061000 Rorug02G0061300 |
| rosa_samantha | Rh2AG108400 Rh2AG108800 Rh2BG110500 Rh2BG110800 Rh2CG112400 Rh2CG112900 Rh2DG111800 Rh2DG112100 |
| rosa_wichuraiana | Rw2G008380 Rw2G008420 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 1867 |
| AarI | CACCTGC | 1 cut(s) | 644 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 810 |
| Acc36I | ACCTGC | 1 cut(s) | 644 |
| AccB1I | GGYRCC | 1 cut(s) | 493 |
| AccII | CGCG | 1 cut(s) | 84 |
| AccIII | TCCGGA | 1 cut(s) | 1855 |
| AciI | CCGC | 3 cut(s) | 351, 1029, 1664 |
| AclI | AACGTT | 1 cut(s) | 240 |
| AclWI | GGATC | 4 cut(s) | 634, 647, 1010, 1307 |
| AcoI | YGGCCR | 2 cut(s) | 339, 1580 |
| AcsI | RAATTY | 7 cut(s) | 199, 323, 426, 832, 977, 1460, 1502 |
| AcuI | CTGAAG | 3 cut(s) | 144, 1343, 1755 |
| AfaI | GTAC | 3 cut(s) | 40, 568, 1075 |
| AfeI | AGCGCT | 1 cut(s) | 148 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 43, 685, 1384 |
| AflIII | ACRYGT | 2 cut(s) | 597, 1527 |
| AhlI | ACTAGT | 3 cut(s) | 514, 563, 1850 |
| AjnI | CCWGG | 4 cut(s) | 72, 403, 678, 1479 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 618, 650 |
| Alw26I | GTCTC | 5 cut(s) | 42, 84, 112, 505, 1134 |
| AlwI | GGATC | 4 cut(s) | 634, 647, 1010, 1307 |
| Ama87I | CYCGRG | 1 cut(s) | 935 |
| Aor13HI | TCCGGA | 1 cut(s) | 1855 |
| Aor51HI | AGCGCT | 1 cut(s) | 148 |
| AoxI | GGCC | 3 cut(s) | 339, 1266, 1580 |
| ApeKI | GCWGC | 4 cut(s) | 29, 136, 670, 1433 |
| ApoI | RAATTY | 7 cut(s) | 199, 323, 426, 832, 977, 1460, 1502 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 1027, 1059 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 633 |
| AspLEI | GCGC | 3 cut(s) | 86, 149, 173 |
| AsuHPI | GGTGA | 3 cut(s) | 128, 1664, 1679 |
| AvaI | CYCGRG | 1 cut(s) | 935 |
| BalI | TGGCCA | 1 cut(s) | 341 |
| BamHI | GGATCC | 1 cut(s) | 639 |
| BanI | GGYRCC | 1 cut(s) | 493 |
| BanII | GRGCYC | 1 cut(s) | 1379 |
| BauI | CACGAG | 2 cut(s) | 456, 1131 |
| BbsI | GAAGAC | 3 cut(s) | 708, 824, 956 |
| BbvCI | CCTCAGC | 1 cut(s) | 1317 |
| BbvI | GCAGC | 4 cut(s) | 41, 148, 657, 1445 |
| BccI | CCATC | 9 cut(s) | 37, 301, 527, 690, 733, 856, 1277, 1300, 1507 |
| BceAI | ACGGC | 2 cut(s) | 1088, 1436 |
| BciT130I | CCWGG | 4 cut(s) | 74, 405, 680, 1481 |
| BcoDI | GTCTC | 5 cut(s) | 42, 84, 112, 505, 1134 |
| BcuI | ACTAGT | 3 cut(s) | 514, 563, 1850 |
| BfoI | RGCGCY | 2 cut(s) | 150, 174 |
| BfuAI | ACCTGC | 1 cut(s) | 644 |
| BglII | AGATCT | 1 cut(s) | 918 |
| BisI | GCNGC | 4 cut(s) | 30, 137, 671, 1434 |
| BlsI | GCNGC | 4 cut(s) | 31, 138, 672, 1435 |
| BmcAI | AGTACT | 1 cut(s) | 568 |
| Bme1390I | CCNGG | 4 cut(s) | 74, 405, 680, 1481 |
| BmeT110I | CYCGRG | 1 cut(s) | 935 |
| BmiI | GGNNCC | 2 cut(s) | 495, 641 |
| BmrFI | CCNGG | 4 cut(s) | 74, 405, 680, 1481 |
| BmrI | ACTGGG | 1 cut(s) | 979 |
| BmsI | GCATC | 4 cut(s) | 301, 369, 889, 1038 |
| BmuI | ACTGGG | 1 cut(s) | 979 |
| BoxI | GACNNNNGTC | 1 cut(s) | 1548 |
| BpiI | GAAGAC | 3 cut(s) | 708, 824, 956 |
| BpmI | CTGGAG | 1 cut(s) | 237 |
| Bpu10I | CCTNAGC | 3 cut(s) | 14, 143, 1317 |
| BpuEI | CTTGAG | 1 cut(s) | 1816 |
| Bsa29I | ATCGAT | 1 cut(s) | 63 |
| BsaAI | YACGTR | 1 cut(s) | 589 |
| BsaBI | GATNNNNATC | 2 cut(s) | 774, 917 |
| BsaI | GGTCTC | 1 cut(s) | 42 |
| BsaJI | CCNNGG | 2 cut(s) | 336, 1328 |
| BsaWI | WCCGGW | 1 cut(s) | 1855 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 618, 648 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 43, 685, 1384 |
| Bse118I | RCCGGY | 1 cut(s) | 132 |
| Bse1I | ACTGG | 4 cut(s) | 391, 985, 1176, 1635 |
| Bse8I | GATNNNNATC | 2 cut(s) | 774, 917 |
| BseAI | TCCGGA | 1 cut(s) | 1855 |
| BseBI | CCWGG | 4 cut(s) | 74, 405, 680, 1481 |
| BseCI | ATCGAT | 1 cut(s) | 63 |
| BseDI | CCNNGG | 2 cut(s) | 336, 1328 |
| BseGI | GGATG | 8 cut(s) | 316, 688, 701, 1222, 1265, 1315, 1518, 1575 |
| BseJI | GATNNNNATC | 2 cut(s) | 774, 917 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 43, 685, 1384 |
| BseMII | CTCAG | 4 cut(s) | 117, 1105, 1331, 1446 |
| BseNI | ACTGG | 4 cut(s) | 391, 985, 1176, 1635 |
| BseXI | GCAGC | 4 cut(s) | 41, 148, 657, 1445 |
| Bsh1236I | CGCG | 1 cut(s) | 84 |
| BshFI | GGCC | 3 cut(s) | 341, 1268, 1582 |
| BshNI | GGYRCC | 1 cut(s) | 493 |
| BshVI | ATCGAT | 1 cut(s) | 63 |
| BsiHKCI | CYCGRG | 1 cut(s) | 935 |
| BsiSI | CCGG | 3 cut(s) | 133, 1579, 1856 |
| BsiWI | CGTACG | 1 cut(s) | 38 |
| BslFI | GGGAC | 1 cut(s) | 32 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 43, 685, 1384 |
| BsmAI | GTCTC | 5 cut(s) | 42, 84, 112, 505, 1134 |
| BsmFI | GGGAC | 1 cut(s) | 32 |
| BsmI | GAATGC | 2 cut(s) | 463, 1830 |
| BsnI | GGCC | 3 cut(s) | 341, 1268, 1582 |
| Bso31I | GGTCTC | 1 cut(s) | 42 |
| BsoBI | CYCGRG | 1 cut(s) | 935 |
| Bsp1286I | GDGCHC | 1 cut(s) | 1379 |
| Bsp13I | TCCGGA | 1 cut(s) | 1855 |
| Bsp143I | GATC | 8 cut(s) | 60, 639, 775, 912, 918, 1015, 1298, 1312 |
| Bsp19I | CCATGG | 1 cut(s) | 1328 |
| BspACI | CCGC | 3 cut(s) | 351, 1029, 1664 |
| BspANI | GGCC | 3 cut(s) | 341, 1268, 1582 |
| BspCNI | CTCAG | 4 cut(s) | 116, 1104, 1330, 1447 |
| BspDI | ATCGAT | 1 cut(s) | 63 |
| BspEI | TCCGGA | 1 cut(s) | 1855 |
| BspFNI | CGCG | 1 cut(s) | 84 |
| BspHI | TCATGA | 1 cut(s) | 1446 |
| BspLI | GGNNCC | 2 cut(s) | 495, 641 |
| BspMI | ACCTGC | 1 cut(s) | 644 |
| BspPI | GGATC | 4 cut(s) | 634, 647, 1010, 1307 |
| BspQI | GCTCTTC | 1 cut(s) | 156 |
| BspT107I | GGYRCC | 1 cut(s) | 493 |
| BspTNI | GGTCTC | 1 cut(s) | 42 |
| BsrFI | RCCGGY | 1 cut(s) | 132 |
| BsrI | ACTGG | 4 cut(s) | 391, 985, 1176, 1635 |
| BssAI | RCCGGY | 1 cut(s) | 132 |
| BssECI | CCNNGG | 2 cut(s) | 336, 1328 |
| BssMI | GATC | 8 cut(s) | 60, 639, 775, 912, 918, 1015, 1298, 1312 |
| BssSI | CACGAG | 2 cut(s) | 456, 1131 |
| BssT1I | CCWWGG | 2 cut(s) | 336, 1328 |
| Bst2BI | CACGAG | 2 cut(s) | 456, 1131 |
| Bst2UI | CCWGG | 4 cut(s) | 74, 405, 680, 1481 |
| Bst4CI | ACNGT | 5 cut(s) | 908, 955, 1571, 1679, 1845 |
| Bst6I | CTCTTC | 2 cut(s) | 156, 936 |
| BstBAI | YACGTR | 1 cut(s) | 589 |
| BstC8I | GCNNGC | 4 cut(s) | 620, 651, 1165, 1425 |
| BstDEI | CTNAG | 9 cut(s) | 14, 103, 143, 572, 1091, 1137, 1317, 1455, 1787 |
| BstDSI | CCRYGG | 1 cut(s) | 1328 |
| BstF5I | GGATG | 8 cut(s) | 316, 688, 701, 1222, 1265, 1315, 1518, 1575 |
| BstFNI | CGCG | 1 cut(s) | 84 |
| BstH2I | RGCGCY | 2 cut(s) | 150, 174 |
| BstHHI | GCGC | 3 cut(s) | 86, 149, 173 |
| BstKTI | GATC | 8 cut(s) | 63, 642, 778, 915, 921, 1018, 1301, 1315 |
| BstMAI | GTCTC | 5 cut(s) | 42, 84, 112, 505, 1134 |
| BstMBI | GATC | 8 cut(s) | 60, 639, 775, 912, 918, 1015, 1298, 1312 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 1115, 1433 |
| BstNI | CCWGG | 4 cut(s) | 74, 405, 680, 1481 |
| BstNSI | RCATGY | 4 cut(s) | 390, 601, 1008, 1531 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 1548 |
| BstSCI | CCNGG | 4 cut(s) | 72, 403, 678, 1479 |
| BstSNI | TACGTA | 1 cut(s) | 589 |
| BstUI | CGCG | 1 cut(s) | 84 |
| BstV1I | GCAGC | 4 cut(s) | 41, 148, 657, 1445 |
| BstV2I | GAAGAC | 3 cut(s) | 708, 824, 956 |
| BstX2I | RGATCY | 2 cut(s) | 639, 918 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 1408 |
| BstYI | RGATCY | 2 cut(s) | 639, 918 |
| Bsu15I | ATCGAT | 1 cut(s) | 63 |
| BsuRI | GGCC | 3 cut(s) | 341, 1268, 1582 |
| BsuTUI | ATCGAT | 1 cut(s) | 63 |
| BtgI | CCRYGG | 1 cut(s) | 1328 |
| BtgZI | GCGATG | 1 cut(s) | 392 |
| BtsCI | GGATG | 8 cut(s) | 316, 688, 701, 1222, 1265, 1315, 1518, 1575 |
| BtsIMutI | CAGTG | 2 cut(s) | 1169, 1642 |
| BveI | ACCTGC | 1 cut(s) | 644 |
| Cac8I | GCNNGC | 4 cut(s) | 620, 651, 1165, 1425 |
| CciI | TCATGA | 1 cut(s) | 1446 |
| CfoI | GCGC | 3 cut(s) | 86, 149, 173 |
| Cfr10I | RCCGGY | 1 cut(s) | 132 |
| ClaI | ATCGAT | 1 cut(s) | 63 |
| CseI | GACGC | 1 cut(s) | 1664 |
| CsiI | ACCWGGT | 2 cut(s) | 72, 403 |
| Csp6I | GTAC | 3 cut(s) | 39, 567, 1074 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 1660, 1695 |
| CviQI | GTAC | 3 cut(s) | 39, 567, 1074 |
| DdeI | CTNAG | 9 cut(s) | 14, 103, 143, 572, 1091, 1137, 1317, 1455, 1787 |
| DpnI | GATC | 8 cut(s) | 62, 641, 777, 914, 920, 1017, 1300, 1314 |
| DpnII | GATC | 8 cut(s) | 60, 639, 775, 912, 918, 1015, 1298, 1312 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 810 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 810 |
| EaeI | YGGCCR | 2 cut(s) | 339, 1580 |
| Eam1104I | CTCTTC | 2 cut(s) | 156, 936 |
| EarI | CTCTTC | 2 cut(s) | 156, 936 |
| Eco105I | TACGTA | 1 cut(s) | 589 |
| Eco130I | CCWWGG | 2 cut(s) | 336, 1328 |
| Eco24I | GRGCYC | 1 cut(s) | 1379 |
| Eco31I | GGTCTC | 1 cut(s) | 42 |
| Eco47III | AGCGCT | 1 cut(s) | 148 |
| Eco57I | CTGAAG | 3 cut(s) | 144, 1343, 1755 |
| Eco88I | CYCGRG | 1 cut(s) | 935 |
| EcoRI | GAATTC | 1 cut(s) | 323 |
| EcoRII | CCWGG | 4 cut(s) | 72, 403, 678, 1479 |
| EcoT14I | CCWWGG | 2 cut(s) | 336, 1328 |
| EcoT22I | ATGCAT | 2 cut(s) | 316, 1006 |
| EcoT38I | GRGCYC | 1 cut(s) | 1379 |
| ErhI | CCWWGG | 2 cut(s) | 336, 1328 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 266, 298, 1766, 1798 |
| FaqI | GGGAC | 1 cut(s) | 32 |
| FauI | CCCGC | 2 cut(s) | 344, 1657 |
| FauNDI | CATATG | 1 cut(s) | 1618 |
| Fnu4HI | GCNGC | 4 cut(s) | 30, 137, 671, 1434 |
| FokI | GGATG | 8 cut(s) | 323, 695, 708, 1229, 1272, 1322, 1525, 1562 |
| FriOI | GRGCYC | 1 cut(s) | 1379 |
| Fsp4HI | GCNGC | 4 cut(s) | 30, 137, 671, 1434 |
| GlaI | GCGC | 3 cut(s) | 85, 148, 172 |
| GluI | GCNGC | 4 cut(s) | 30, 137, 671, 1434 |
| GsuI | CTGGAG | 1 cut(s) | 237 |
| HaeII | RGCGCY | 2 cut(s) | 150, 174 |
| HaeIII | GGCC | 3 cut(s) | 341, 1268, 1582 |
| HapII | CCGG | 3 cut(s) | 133, 1579, 1856 |
| HgaI | GACGC | 1 cut(s) | 1664 |
| HhaI | GCGC | 3 cut(s) | 86, 149, 173 |
| Hin6I | GCGC | 3 cut(s) | 84, 147, 171 |
| HinP1I | GCGC | 3 cut(s) | 84, 147, 171 |
| HincII | GTYRAC | 2 cut(s) | 870, 1848 |
| HindII | GTYRAC | 2 cut(s) | 870, 1848 |
| HpaI | GTTAAC | 1 cut(s) | 870 |
| HpaII | CCGG | 3 cut(s) | 133, 1579, 1856 |
| HphI | GGTGA | 3 cut(s) | 128, 1664, 1679 |
| Hpy166II | GTNNAC | 3 cut(s) | 757, 870, 1848 |
| Hpy188I | TCNGA | 9 cut(s) | 423, 474, 639, 780, 816, 1094, 1292, 1456, 1489 |
| Hpy8I | GTNNAC | 3 cut(s) | 757, 870, 1848 |
| Hpy99I | CGWCG | 2 cut(s) | 26, 115 |
| HpyAV | CCTTC | 2 cut(s) | 1378, 1407 |
| HpyCH4III | ACNGT | 5 cut(s) | 908, 955, 1571, 1679, 1845 |
| HpyCH4IV | ACGT | 2 cut(s) | 240, 588 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 1115, 1433 |
| HpyF3I | CTNAG | 9 cut(s) | 14, 103, 143, 572, 1091, 1137, 1317, 1455, 1787 |
| HpySE526I | ACGT | 2 cut(s) | 240, 588 |
| HspAI | GCGC | 3 cut(s) | 84, 147, 171 |
| Kpn2I | TCCGGA | 1 cut(s) | 1855 |
| KspAI | GTTAAC | 1 cut(s) | 870 |
| Kzo9I | GATC | 8 cut(s) | 60, 639, 775, 912, 918, 1015, 1298, 1312 |
| LguI | GCTCTTC | 1 cut(s) | 156 |
| LmnI | GCTCC | 3 cut(s) | 144, 218, 742 |
| Lsp1109I | GCAGC | 4 cut(s) | 41, 148, 657, 1445 |
| LweI | GCATC | 4 cut(s) | 301, 369, 889, 1038 |
| MabI | ACCWGGT | 2 cut(s) | 72, 403 |
| MaeII | ACGT | 2 cut(s) | 240, 588 |
| MaeIII | GTNAC | 6 cut(s) | 193, 1033, 1565, 1571, 1652, 1667 |
| MalI | GATC | 8 cut(s) | 62, 641, 777, 914, 920, 1017, 1300, 1314 |
| MboI | GATC | 8 cut(s) | 60, 639, 775, 912, 918, 1015, 1298, 1312 |
| MfeI | CAATTG | 1 cut(s) | 522 |
| MflI | RGATCY | 2 cut(s) | 639, 918 |
| MhlI | GDGCHC | 1 cut(s) | 1379 |
| MlsI | TGGCCA | 1 cut(s) | 341 |
| MluNI | TGGCCA | 1 cut(s) | 341 |
| MlyI | GAGTC | 5 cut(s) | 710, 770, 947, 1361, 1868 |
| MmeI | TCCRAC | 2 cut(s) | 588, 794 |
| MnlI | CCTC | 5 cut(s) | 19, 821, 1326, 1705, 1840 |
| Mox20I | TGGCCA | 1 cut(s) | 341 |
| Mph1103I | ATGCAT | 2 cut(s) | 316, 1006 |
| MroI | TCCGGA | 1 cut(s) | 1855 |
| MroXI | GAANNNNTTC | 1 cut(s) | 633 |
| MscI | TGGCCA | 1 cut(s) | 341 |
| MseI | TTAA | 5 cut(s) | 273, 555, 809, 869, 945 |
| MslI | CAYNNNNRTG | 1 cut(s) | 1823 |
| Msp20I | TGGCCA | 1 cut(s) | 341 |
| MspA1I | CMGCKG | 1 cut(s) | 1321 |
| MspI | CCGG | 3 cut(s) | 133, 1579, 1856 |
| MspR9I | CCNGG | 4 cut(s) | 74, 405, 680, 1481 |
| MunI | CAATTG | 1 cut(s) | 522 |
| Mva1269I | GAATGC | 2 cut(s) | 463, 1830 |
| MvaI | CCWGG | 4 cut(s) | 74, 405, 680, 1481 |
| MvnI | CGCG | 1 cut(s) | 84 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 1115, 1433 |
| NcoI | CCATGG | 1 cut(s) | 1328 |
| NdeI | CATATG | 1 cut(s) | 1618 |
| NdeII | GATC | 8 cut(s) | 60, 639, 775, 912, 918, 1015, 1298, 1312 |
| NlaIV | GGNNCC | 2 cut(s) | 495, 641 |
| NmuCI | GTSAC | 5 cut(s) | 193, 1033, 1565, 1652, 1667 |
| NsiI | ATGCAT | 2 cut(s) | 316, 1006 |
| NspI | RCATGY | 4 cut(s) | 390, 601, 1008, 1531 |
| PaeR7I | CTCGAG | 1 cut(s) | 935 |
| PagI | TCATGA | 1 cut(s) | 1446 |
| PaqCI | CACCTGC | 1 cut(s) | 644 |
| PciI | ACATGT | 2 cut(s) | 597, 1527 |
| PciSI | GCTCTTC | 1 cut(s) | 156 |
| PctI | GAATGC | 2 cut(s) | 463, 1830 |
| PdmI | GAANNNNTTC | 1 cut(s) | 633 |
| PfeI | GAWTC | 6 cut(s) | 65, 332, 887, 1484, 1631, 1778 |
| Pfl23II | CGTACG | 1 cut(s) | 38 |
| PkrI | GCNGC | 4 cut(s) | 31, 138, 672, 1435 |
| PleI | GAGTC | 5 cut(s) | 710, 769, 946, 1360, 1867 |
| PpsI | GAGTC | 5 cut(s) | 710, 769, 946, 1360, 1867 |
| Ppu21I | YACGTR | 1 cut(s) | 589 |
| PscI | ACATGT | 2 cut(s) | 597, 1527 |
| PshAI | GACNNNNGTC | 1 cut(s) | 1548 |
| PsiI | TTATAA | 1 cut(s) | 1867 |
| Psp1406I | AACGTT | 1 cut(s) | 240 |
| Psp6I | CCWGG | 4 cut(s) | 72, 403, 678, 1479 |
| PspGI | CCWGG | 4 cut(s) | 72, 403, 678, 1479 |
| PspLI | CGTACG | 1 cut(s) | 38 |
| PspN4I | GGNNCC | 2 cut(s) | 495, 641 |
| PsuI | RGATCY | 2 cut(s) | 639, 918 |
| PvuII | CAGCTG | 1 cut(s) | 1321 |
| RsaI | GTAC | 3 cut(s) | 40, 568, 1075 |
| RsaNI | GTAC | 3 cut(s) | 39, 567, 1074 |
| RseI | CAYNNNNRTG | 1 cut(s) | 1823 |
| SapI | GCTCTTC | 1 cut(s) | 156 |
| SaqAI | TTAA | 5 cut(s) | 273, 555, 809, 869, 945 |
| SatI | GCNGC | 4 cut(s) | 30, 137, 671, 1434 |
| Sau3AI | GATC | 8 cut(s) | 60, 639, 775, 912, 918, 1015, 1298, 1312 |
| ScaI | AGTACT | 1 cut(s) | 568 |
| SchI | GAGTC | 5 cut(s) | 710, 770, 947, 1361, 1868 |
| ScrFI | CCNGG | 4 cut(s) | 74, 405, 680, 1481 |
| SduI | GDGCHC | 1 cut(s) | 1379 |
| SexAI | ACCWGGT | 2 cut(s) | 72, 403 |
| SfaNI | GCATC | 4 cut(s) | 301, 369, 889, 1038 |
| Sfr274I | CTCGAG | 1 cut(s) | 935 |
| SlaI | CTCGAG | 1 cut(s) | 935 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 1823 |
| SmlI | CTYRAG | 2 cut(s) | 935, 1831 |
| SmoI | CTYRAG | 2 cut(s) | 935, 1831 |
| SnaBI | TACGTA | 1 cut(s) | 589 |
| SpeI | ACTAGT | 3 cut(s) | 514, 563, 1850 |
| SsiI | CCGC | 3 cut(s) | 351, 1029, 1664 |
| SspI | AATATT | 2 cut(s) | 732, 1248 |
| StyD4I | CCNGG | 4 cut(s) | 72, 403, 678, 1479 |
| StyI | CCWWGG | 2 cut(s) | 336, 1328 |
| TaaI | ACNGT | 5 cut(s) | 908, 955, 1571, 1679, 1845 |
| TaiI | ACGT | 2 cut(s) | 243, 591 |
| TaqI | TCGA | 4 cut(s) | 63, 915, 936, 1524 |
| TatI | WGTACW | 1 cut(s) | 566 |
| TfiI | GAWTC | 6 cut(s) | 65, 332, 887, 1484, 1631, 1778 |
| Tru1I | TTAA | 5 cut(s) | 273, 555, 809, 869, 945 |
| Tru9I | TTAA | 5 cut(s) | 273, 555, 809, 869, 945 |
| TscAI | CASTG | 2 cut(s) | 1176, 1642 |
| TseFI | GTSAC | 5 cut(s) | 193, 1033, 1565, 1652, 1667 |
| TseI | GCWGC | 4 cut(s) | 29, 136, 670, 1433 |
| Tsp45I | GTSAC | 5 cut(s) | 193, 1033, 1565, 1652, 1667 |
| TspGWI | ACGGA | 2 cut(s) | 26, 459 |
| TspRI | CASTG | 2 cut(s) | 1176, 1642 |
| XapI | RAATTY | 7 cut(s) | 199, 323, 426, 832, 977, 1460, 1502 |
| XbaI | TCTAGA | 1 cut(s) | 764 |
| XceI | RCATGY | 4 cut(s) | 390, 601, 1008, 1531 |
| XhoI | CTCGAG | 1 cut(s) | 935 |
| XmnI | GAANNNNTTC | 1 cut(s) | 633 |
| ZrmI | AGTACT | 1 cut(s) | 568 |
| Zsp2I | ATGCAT | 2 cut(s) | 316, 1006 |