Rh2AG108800

RNA polymerase I-specific transcription initiation factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0004110
Physical Location & Seq
Reverse (-)
9607576 .. 9609233
1658 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG108800.1

Sequence Viewer

Length: 711 bp
ATGGATAATCGCGAGCTTCATTCACTTGGGGGCTTGGATCTTTCGTTGAGATTGGATAGGGCCTATTCTCTTACGGCTGAGCCAGAACCTCAGGTCCAGGCTATCCCTCCGAAATTGCAGGAGAACCTAGCTCTGCACGTCAAGGAAGTTCTCGTTTCGTTCTCATCTGGAGATGTTGAATCTTCTGAAAACTACCGGAACCTGGTTGCGGTTCTGCACAGGAAGAAGAACCTCTCCCCTAGAGACGTAGCTGAGCTCGTGGCAATTTTGAAAGGACTATCCCGCGCAGCTGCTTATATTGACAGTGCTCATTGCGACCTCTACTCTGCAATTTTTAACATGAGCCTGTGGAACTATGGGCCGGAGGTGATGGGTGCATTGATTGAATTGATTATTGCTTTGGCCACTTCAAGTGGGAAGTATCTTGATATATGCTTGGAGATGCTCGTATCCAATTTCGTGTCTCATGATCCTTATATGCTGGATAAGTTGAAGATGCCGCATGGTCTTAAAAAGAAGGATCAAGTTTTAACTCGTGTCCACAGAGCTCTGAAAGTTATCTCTGATTTGTCACCTCTTTCCCCTAGAAATTTGCTGATACTAGTTTACCGTGGTCTAAATGGATATTATACCAGAAAAGGAACTAGTACTCTTGCTCTTGAGTTATGCGTAGAGAACATGCTAAAGTTGGAGAGCGGTGCGCTTGGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RRN3

Protein Analysis

236

Amino Acids

26.17

Weight (kDa)

7.05

Isoelectric Point (pI)

32.35

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RRN3 PF05327 44 - 203 4.1e-22 RNA polymerase I specific transcription initiation factor RRN3
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 696
AccII CGCG 2 cut(s) 12, 285
AciI CCGC 4 cut(s) 209, 283, 500, 696
AclWI GGATC 3 cut(s) 45, 464, 528
AcoI YGGCCR 1 cut(s) 402
AcsI RAATTY 1 cut(s) 589
AfaI GTAC 1 cut(s) 649
AfiI CCNNNNNNNGG 2 cut(s) 202, 208
AgsI TTSAA 5 cut(s) 179, 271, 386, 411, 493
AhlI ACTAGT 2 cut(s) 601, 644
AjiI CACGTC 1 cut(s) 139
AjnI CCWGG 2 cut(s) 96, 201
AloI GAACNNNNNNTCC 2 cut(s) 78, 110
AluBI AGCT 6 cut(s) 16, 131, 251, 256, 290, 548
AluI AGCT 6 cut(s) 16, 131, 251, 256, 290, 548
Alw21I GWGCWC 3 cut(s) 258, 310, 550
Alw26I GTCTC 2 cut(s) 237, 468
AlwI GGATC 3 cut(s) 45, 464, 528
AoxI GGCC 3 cut(s) 60, 359, 402
ApeKI GCWGC 2 cut(s) 287, 290
ApoI RAATTY 1 cut(s) 589
AspLEI GCGC 2 cut(s) 287, 703
AspS9I GGNCC 3 cut(s) 60, 94, 359
AsuHPI GGTGA 2 cut(s) 379, 564
AvaII GGWCC 1 cut(s) 94
AxyI CCTNAGG 1 cut(s) 90
BalI TGGCCA 1 cut(s) 404
BanII GRGCYC 2 cut(s) 258, 550
BauI CACGAG 2 cut(s) 257, 534
Bbv12I GWGCWC 3 cut(s) 258, 310, 550
BbvI GCAGC 2 cut(s) 277, 299
BccI CCATC 1 cut(s) 364
BceAI ACGGC 1 cut(s) 90
BciT130I CCWGG 2 cut(s) 98, 203
BciVI GTATCC 1 cut(s) 460
BcoDI GTCTC 2 cut(s) 237, 468
BcuI ACTAGT 2 cut(s) 601, 644
BfaI CTAG 5 cut(s) 128, 240, 585, 602, 645
BfuI GTATCC 1 cut(s) 460
BisI GCNGC 3 cut(s) 288, 291, 500
BlpI GCTNAGC 2 cut(s) 78, 252
BlsI GCNGC 3 cut(s) 289, 292, 501
BmcAI AGTACT 1 cut(s) 649
Bme1390I CCNGG 2 cut(s) 98, 203
Bme18I GGWCC 1 cut(s) 94
BmgBI CACGTC 1 cut(s) 139
BmgT120I GGNCC 3 cut(s) 60, 94, 359
BmiI GGNNCC 1 cut(s) 200
BmrFI CCNGG 2 cut(s) 98, 203
BmsI GCATC 2 cut(s) 432, 486
BpmI CTGGAG 1 cut(s) 189
Bpu1102I GCTNAGC 2 cut(s) 78, 252
BpuEI CTTGAG 1 cut(s) 680
BsaJI CCNNGG 1 cut(s) 610
BsaWI WCCGGW 1 cut(s) 195
Bsc4I CCNNNNNNNGG 2 cut(s) 202, 208
Bse21I CCTNAGG 1 cut(s) 90
Bse3DI GCAATG 1 cut(s) 310
BseBI CCWGG 2 cut(s) 98, 203
BseDI CCNNGG 1 cut(s) 610
BseLI CCNNNNNNNGG 2 cut(s) 202, 208
BseMI GCAATG 1 cut(s) 310
BseMII CTCAG 3 cut(s) 69, 104, 243
BseXI GCAGC 2 cut(s) 277, 299
BsgI GTGCAG 2 cut(s) 119, 200
Bsh1236I CGCG 2 cut(s) 12, 285
BshFI GGCC 3 cut(s) 62, 361, 404
BsiHKAI GWGCWC 3 cut(s) 258, 310, 550
BsiSI CCGG 2 cut(s) 196, 362
BslI CCNNNNNNNGG 2 cut(s) 202, 208
BsmAI GTCTC 2 cut(s) 237, 468
BsmBI CGTCTC 1 cut(s) 237
BsnI GGCC 3 cut(s) 62, 361, 404
Bsp1286I GDGCHC 3 cut(s) 258, 310, 550
Bsp143I GATC 3 cut(s) 37, 469, 520
Bsp1720I GCTNAGC 2 cut(s) 78, 252
Bsp68I TCGCGA 1 cut(s) 12
BspACI CCGC 4 cut(s) 209, 283, 500, 696
BspANI GGCC 3 cut(s) 62, 361, 404
BspCNI CTCAG 3 cut(s) 70, 103, 244
BspFNI CGCG 2 cut(s) 12, 285
BspHI TCATGA 1 cut(s) 466
BspLI GGNNCC 1 cut(s) 200
BspPI GGATC 3 cut(s) 45, 464, 528
BsrBI CCGCTC 1 cut(s) 696
BsrDI GCAATG 1 cut(s) 310
BssECI CCNNGG 1 cut(s) 610
BssMI GATC 3 cut(s) 37, 469, 520
BssSI CACGAG 2 cut(s) 257, 534
Bst2BI CACGAG 2 cut(s) 257, 534
Bst2UI CCWGG 2 cut(s) 98, 203
Bst4CI ACNGT 2 cut(s) 305, 611
BstC8I GCNNGC 1 cut(s) 14
BstDEI CTNAG 3 cut(s) 78, 90, 252
BstDSI CCRYGG 1 cut(s) 610
BstFNI CGCG 2 cut(s) 12, 285
BstHHI GCGC 2 cut(s) 287, 703
BstKTI GATC 3 cut(s) 40, 472, 523
BstMAI GTCTC 2 cut(s) 237, 468
BstMBI GATC 3 cut(s) 37, 469, 520
BstNI CCWGG 2 cut(s) 98, 203
BstNSI RCATGY 1 cut(s) 682
BstSCI CCNGG 2 cut(s) 96, 201
BstUI CGCG 2 cut(s) 12, 285
BstV1I GCAGC 2 cut(s) 277, 299
BstX2I RGATCY 1 cut(s) 37
BstYI RGATCY 1 cut(s) 37
Bsu36I CCTNAGG 1 cut(s) 90
BsuI GTATCC 1 cut(s) 460
BsuRI GGCC 3 cut(s) 62, 361, 404
BtgI CCRYGG 1 cut(s) 610
BtrI CACGTC 1 cut(s) 139
BtsIMutI CAGTG 1 cut(s) 310
BtuMI TCGCGA 1 cut(s) 12
Cac8I GCNNGC 1 cut(s) 14
CciI TCATGA 1 cut(s) 466
CfoI GCGC 2 cut(s) 287, 703
Cfr13I GGNCC 3 cut(s) 60, 94, 359
CsiI ACCWGGT 1 cut(s) 201
Csp6I GTAC 1 cut(s) 648
CviAII CATG 4 cut(s) 340, 467, 503, 679
CviQI GTAC 1 cut(s) 648
DdeI CTNAG 3 cut(s) 78, 90, 252
DpnI GATC 3 cut(s) 39, 471, 522
DpnII GATC 3 cut(s) 37, 469, 520
EaeI YGGCCR 1 cut(s) 402
Ecl136II GAGCTC 2 cut(s) 256, 548
Eco24I GRGCYC 2 cut(s) 258, 550
Eco47I GGWCC 1 cut(s) 94
Eco53kI GAGCTC 2 cut(s) 256, 548
Eco81I CCTNAGG 1 cut(s) 90
EcoICRI GAGCTC 2 cut(s) 256, 548
EcoO109I RGGNCCY 1 cut(s) 60
EcoRII CCWGG 2 cut(s) 96, 201
EcoT38I GRGCYC 2 cut(s) 258, 550
Esp3I CGTCTC 1 cut(s) 237
FaeI CATG 4 cut(s) 343, 470, 506, 682
FatI CATG 4 cut(s) 339, 466, 502, 678
FauI CCCGC 1 cut(s) 290
Fnu4HI GCNGC 3 cut(s) 288, 291, 500
FriOI GRGCYC 2 cut(s) 258, 550
Fsp4HI GCNGC 3 cut(s) 288, 291, 500
FspBI CTAG 5 cut(s) 128, 240, 585, 602, 645
GlaI GCGC 2 cut(s) 286, 702
GluI GCNGC 3 cut(s) 288, 291, 500
GsuI CTGGAG 1 cut(s) 189
HaeIII GGCC 3 cut(s) 62, 361, 404
HapII CCGG 2 cut(s) 196, 362
HhaI GCGC 2 cut(s) 287, 703
Hin1II CATG 4 cut(s) 343, 470, 506, 682
Hin6I GCGC 2 cut(s) 285, 701
HinP1I GCGC 2 cut(s) 285, 701
HinfI GANTC 1 cut(s) 179
HpaII CCGG 2 cut(s) 196, 362
HphI GGTGA 2 cut(s) 379, 564
Hpy166II GTNNAC 2 cut(s) 541, 607
Hpy188I TCNGA 4 cut(s) 111, 187, 552, 565
Hpy188III TCNNGA 5 cut(s) 11, 168, 425, 467, 659
Hpy8I GTNNAC 2 cut(s) 541, 607
HpyAV CCTTC 1 cut(s) 511
HpyCH4III ACNGT 2 cut(s) 305, 611
HpyCH4IV ACGT 2 cut(s) 138, 246
HpyCH4V TGCA 5 cut(s) 118, 136, 217, 329, 377
HpyF3I CTNAG 3 cut(s) 78, 90, 252
HpySE526I ACGT 2 cut(s) 138, 246
Hsp92II CATG 4 cut(s) 343, 470, 506, 682
HspAI GCGC 2 cut(s) 285, 701
Kzo9I GATC 3 cut(s) 37, 469, 520
Lsp1109I GCAGC 2 cut(s) 277, 299
LweI GCATC 2 cut(s) 432, 486
MabI ACCWGGT 1 cut(s) 201
MaeI CTAG 5 cut(s) 128, 240, 585, 602, 645
MaeII ACGT 2 cut(s) 138, 246
MaeIII GTNAC 1 cut(s) 570
MalI GATC 3 cut(s) 39, 471, 522
MbiI CCGCTC 1 cut(s) 696
MboI GATC 3 cut(s) 37, 469, 520
MboII GAAGA 4 cut(s) 174, 235, 238, 505
MflI RGATCY 1 cut(s) 37
MhlI GDGCHC 3 cut(s) 258, 310, 550
MlsI TGGCCA 1 cut(s) 404
MluCI AATT 6 cut(s) 113, 264, 330, 386, 454, 589
MluNI TGGCCA 1 cut(s) 404
MmeI TCCRAC 1 cut(s) 669
MnlI CCTC 6 cut(s) 99, 117, 242, 329, 358, 585
Mox20I TGGCCA 1 cut(s) 404
MscI TGGCCA 1 cut(s) 404
MseI TTAA 3 cut(s) 336, 510, 530
Msp20I TGGCCA 1 cut(s) 404
MspA1I CMGCKG 1 cut(s) 290
MspI CCGG 2 cut(s) 196, 362
MspR9I CCNGG 2 cut(s) 98, 203
MvaI CCWGG 2 cut(s) 98, 203
MvnI CGCG 2 cut(s) 12, 285
NdeII GATC 3 cut(s) 37, 469, 520
NlaIII CATG 4 cut(s) 343, 470, 506, 682
NlaIV GGNNCC 1 cut(s) 200
NmuCI GTSAC 1 cut(s) 570
NruI TCGCGA 1 cut(s) 12
NspI RCATGY 1 cut(s) 682
PagI TCATGA 1 cut(s) 466
PfeI GAWTC 1 cut(s) 179
PkrI GCNGC 3 cut(s) 289, 292, 501
Psp124BI GAGCTC 2 cut(s) 258, 550
Psp6I CCWGG 2 cut(s) 96, 201
PspGI CCWGG 2 cut(s) 96, 201
PspN4I GGNNCC 1 cut(s) 200
PspPI GGNCC 3 cut(s) 60, 94, 359
PsuI RGATCY 1 cut(s) 37
PvuII CAGCTG 1 cut(s) 290
RruI TCGCGA 1 cut(s) 12
RsaI GTAC 1 cut(s) 649
RsaNI GTAC 1 cut(s) 648
SacI GAGCTC 2 cut(s) 258, 550
SaqAI TTAA 3 cut(s) 336, 510, 530
SatI GCNGC 3 cut(s) 288, 291, 500
Sau3AI GATC 3 cut(s) 37, 469, 520
Sau96I GGNCC 3 cut(s) 60, 94, 359
ScaI AGTACT 1 cut(s) 649
ScrFI CCNGG 2 cut(s) 98, 203
SduI GDGCHC 3 cut(s) 258, 310, 550
SexAI ACCWGGT 1 cut(s) 201
SfaNI GCATC 2 cut(s) 432, 486
SinI GGWCC 1 cut(s) 94
SmlI CTYRAG 1 cut(s) 659
SmoI CTYRAG 1 cut(s) 659
SpeI ACTAGT 2 cut(s) 601, 644
Sse9I AATT 6 cut(s) 113, 264, 330, 386, 454, 589
SsiI CCGC 4 cut(s) 209, 283, 500, 696
SspMI CTAG 5 cut(s) 128, 240, 585, 602, 645
SstI GAGCTC 2 cut(s) 258, 550
StyD4I CCNGG 2 cut(s) 96, 201
TaaI ACNGT 2 cut(s) 305, 611
TaiI ACGT 2 cut(s) 141, 249
TasI AATT 6 cut(s) 113, 264, 330, 386, 454, 589
TatI WGTACW 1 cut(s) 647
TauI GCSGC 1 cut(s) 502
TfiI GAWTC 1 cut(s) 179
Tru1I TTAA 3 cut(s) 336, 510, 530
Tru9I TTAA 3 cut(s) 336, 510, 530
TscAI CASTG 1 cut(s) 310
TseFI GTSAC 1 cut(s) 570
TseI GCWGC 2 cut(s) 287, 290
Tsp45I GTSAC 1 cut(s) 570
TspDTI ATGAA 1 cut(s) 8
TspRI CASTG 1 cut(s) 310
VpaK11BI GGWCC 1 cut(s) 94
XapI RAATTY 1 cut(s) 589
XceI RCATGY 1 cut(s) 682
XspI CTAG 5 cut(s) 128, 240, 585, 602, 645
ZrmI AGTACT 1 cut(s) 649
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.