RchiOBHm_Chr2g0096841

RNA polymerase I-specific transcription initiation factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0004110
Physical Location & Seq
Reverse (-)
9573123 .. 9575974
2852 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ47173

Sequence Viewer

Length: 615 bp
ATGAACGACGCCGTTTACTCCGAGTATGACCTAGCTCTGCACGTAAAGGAAGTTCTCGTTTCGTTCTCATCTGGAGATGTTGAATCTTCTGAAAACTACCGGAACCTGGTTGCGGTTCTGCACAGGAAGAAAAACCTCTCCCCTAGAGACTTAGCTGAGCTCGTGGCAATTTTGAAAGGACTATCCGGCGCAGCTGCTTATATTGACAGTGCTCATTGCGACCTCTACTCTGCAATTTTTAACATGATCCTGTGGAACTATGGGCCGGGGGTGATGGATGCAATGATTGAATTGATTATTGCTTTGGCCACTTCAAGTGGGAAGTATCTTGATATATGCTTGGAGATGCTCGTATCCAATTTCGTGTCTCAGGATCCTTATATGCTGGATAAGTTGAAGGTGCCGCATGGTCTTAAAAAGAAGGATCAAGTTTTAACTCGTGTCCACAGAGCTCTGAAAGTTATCTCTGATTTGTCACCTCTTTCCCCTAGAAATTTGCTGATACTAGTTTACCGTGGTCTAAATGGATATTATACCAGAAAAGGAACTAGTACTCTTGCTCTTGAGTTATGCGTAGAGAACATGCCAAAGTTGGAGAGCGGTGCGCTTGGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RRN3

Protein Analysis

204

Amino Acids

22.55

Weight (kDa)

6.51

Isoelectric Point (pI)

28.4

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RRN3 PF05327 13 - 170 8.2e-22 RNA polymerase I specific transcription initiation factor RRN3
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 400
AccBSI CCGCTC 1 cut(s) 600
AciI CCGC 3 cut(s) 113, 404, 600
AclWI GGATC 4 cut(s) 241, 368, 381, 432
AcoI YGGCCR 1 cut(s) 306
AcsI RAATTY 1 cut(s) 493
AcyI GRCGYC 1 cut(s) 9
AfaI GTAC 1 cut(s) 553
AfiI CCNNNNNNNGG 2 cut(s) 106, 112
AgsI TTSAA 5 cut(s) 83, 175, 290, 315, 397
AhlI ACTAGT 2 cut(s) 505, 548
AjnI CCWGG 1 cut(s) 105
AluBI AGCT 5 cut(s) 35, 155, 160, 194, 452
AluI AGCT 5 cut(s) 35, 155, 160, 194, 452
Alw21I GWGCWC 3 cut(s) 162, 214, 454
Alw26I GTCTC 2 cut(s) 141, 372
AlwI GGATC 4 cut(s) 241, 368, 381, 432
AoxI GGCC 2 cut(s) 263, 306
ApeKI GCWGC 2 cut(s) 191, 194
ApoI RAATTY 1 cut(s) 493
AspLEI GCGC 2 cut(s) 191, 607
AspS9I GGNCC 1 cut(s) 263
AsuC2I CCSGG 1 cut(s) 267
AsuHPI GGTGA 2 cut(s) 283, 468
BalI TGGCCA 1 cut(s) 308
BamHI GGATCC 1 cut(s) 373
BanI GGYRCC 1 cut(s) 400
BanII GRGCYC 2 cut(s) 162, 454
BauI CACGAG 2 cut(s) 161, 438
Bbv12I GWGCWC 3 cut(s) 162, 214, 454
BbvI GCAGC 2 cut(s) 181, 203
BccI CCATC 1 cut(s) 268
BciT130I CCWGG 1 cut(s) 107
BciVI GTATCC 1 cut(s) 364
BcnI CCSGG 1 cut(s) 267
BcoDI GTCTC 2 cut(s) 141, 372
BcuI ACTAGT 2 cut(s) 505, 548
BfaI CTAG 5 cut(s) 32, 144, 489, 506, 549
BfuI GTATCC 1 cut(s) 364
BisI GCNGC 3 cut(s) 192, 195, 404
BlpI GCTNAGC 1 cut(s) 156
BlsI GCNGC 3 cut(s) 193, 196, 405
BmcAI AGTACT 1 cut(s) 553
Bme1390I CCNGG 2 cut(s) 107, 267
BmgT120I GGNCC 1 cut(s) 263
BmiI GGNNCC 3 cut(s) 104, 375, 402
BmrFI CCNGG 2 cut(s) 107, 267
BmsI GCATC 2 cut(s) 268, 336
BpmI CTGGAG 1 cut(s) 93
Bpu1102I GCTNAGC 1 cut(s) 156
BpuEI CTTGAG 1 cut(s) 584
BpuMI CCSGG 1 cut(s) 267
BsaAI YACGTR 1 cut(s) 43
BsaHI GRCGYC 1 cut(s) 9
BsaJI CCNNGG 2 cut(s) 266, 514
BsaWI WCCGGW 1 cut(s) 99
Bsc4I CCNNNNNNNGG 2 cut(s) 106, 112
Bse3DI GCAATG 2 cut(s) 214, 288
BseBI CCWGG 1 cut(s) 107
BseDI CCNNGG 2 cut(s) 266, 514
BseGI GGATG 1 cut(s) 283
BseLI CCNNNNNNNGG 2 cut(s) 106, 112
BseMI GCAATG 2 cut(s) 214, 288
BseMII CTCAG 2 cut(s) 147, 383
BseXI GCAGC 2 cut(s) 181, 203
BsgI GTGCAG 2 cut(s) 23, 104
BshFI GGCC 2 cut(s) 265, 308
BshNI GGYRCC 1 cut(s) 400
BsiHKAI GWGCWC 3 cut(s) 162, 214, 454
BsiSI CCGG 3 cut(s) 100, 186, 266
BslI CCNNNNNNNGG 2 cut(s) 106, 112
BsmAI GTCTC 2 cut(s) 141, 372
BsnI GGCC 2 cut(s) 265, 308
Bsp1286I GDGCHC 3 cut(s) 162, 214, 454
Bsp143I GATC 3 cut(s) 246, 373, 424
Bsp1720I GCTNAGC 1 cut(s) 156
BspACI CCGC 3 cut(s) 113, 404, 600
BspANI GGCC 2 cut(s) 265, 308
BspCNI CTCAG 2 cut(s) 148, 382
BspLI GGNNCC 3 cut(s) 104, 375, 402
BspPI GGATC 4 cut(s) 241, 368, 381, 432
BspT107I GGYRCC 1 cut(s) 400
BsrBI CCGCTC 1 cut(s) 600
BsrDI GCAATG 2 cut(s) 214, 288
BssECI CCNNGG 2 cut(s) 266, 514
BssMI GATC 3 cut(s) 246, 373, 424
BssNI GRCGYC 1 cut(s) 9
BssSI CACGAG 2 cut(s) 161, 438
Bst2BI CACGAG 2 cut(s) 161, 438
Bst2UI CCWGG 1 cut(s) 107
Bst4CI ACNGT 2 cut(s) 209, 515
BstACI GRCGYC 1 cut(s) 9
BstBAI YACGTR 1 cut(s) 43
BstDEI CTNAG 3 cut(s) 151, 156, 369
BstDSI CCRYGG 1 cut(s) 514
BstF5I GGATG 1 cut(s) 283
BstHHI GCGC 2 cut(s) 191, 607
BstKTI GATC 3 cut(s) 249, 376, 427
BstMAI GTCTC 2 cut(s) 141, 372
BstMBI GATC 3 cut(s) 246, 373, 424
BstNI CCWGG 1 cut(s) 107
BstNSI RCATGY 1 cut(s) 586
BstSCI CCNGG 2 cut(s) 105, 265
BstV1I GCAGC 2 cut(s) 181, 203
BstX2I RGATCY 1 cut(s) 373
BstYI RGATCY 1 cut(s) 373
BsuI GTATCC 1 cut(s) 364
BsuRI GGCC 2 cut(s) 265, 308
BtgI CCRYGG 1 cut(s) 514
BtsCI GGATG 1 cut(s) 283
BtsIMutI CAGTG 1 cut(s) 214
CfoI GCGC 2 cut(s) 191, 607
Cfr13I GGNCC 1 cut(s) 263
CseI GACGC 1 cut(s) 17
CsiI ACCWGGT 1 cut(s) 105
Csp6I GTAC 1 cut(s) 552
CviAII CATG 3 cut(s) 244, 407, 583
CviJI RGCY 8 cut(s) 35, 155, 160, 194, 265, 308, 452, 612
CviKI_1 RGCY 8 cut(s) 35, 155, 160, 194, 265, 308, 452, 612
CviQI GTAC 1 cut(s) 552
DdeI CTNAG 3 cut(s) 151, 156, 369
DpnI GATC 3 cut(s) 248, 375, 426
DpnII GATC 3 cut(s) 246, 373, 424
EaeI YGGCCR 1 cut(s) 306
Ecl136II GAGCTC 2 cut(s) 160, 452
Eco24I GRGCYC 2 cut(s) 162, 454
Eco53kI GAGCTC 2 cut(s) 160, 452
EcoICRI GAGCTC 2 cut(s) 160, 452
EcoRII CCWGG 1 cut(s) 105
EcoT38I GRGCYC 2 cut(s) 162, 454
FaeI CATG 3 cut(s) 247, 410, 586
FatI CATG 3 cut(s) 243, 406, 582
Fnu4HI GCNGC 3 cut(s) 192, 195, 404
FokI GGATG 1 cut(s) 290
FriOI GRGCYC 2 cut(s) 162, 454
Fsp4HI GCNGC 3 cut(s) 192, 195, 404
FspBI CTAG 5 cut(s) 32, 144, 489, 506, 549
GlaI GCGC 2 cut(s) 190, 606
GluI GCNGC 3 cut(s) 192, 195, 404
GsuI CTGGAG 1 cut(s) 93
HaeIII GGCC 2 cut(s) 265, 308
HapII CCGG 3 cut(s) 100, 186, 266
HgaI GACGC 1 cut(s) 17
HhaI GCGC 2 cut(s) 191, 607
Hin1I GRCGYC 1 cut(s) 9
Hin1II CATG 3 cut(s) 247, 410, 586
Hin6I GCGC 2 cut(s) 189, 605
HinP1I GCGC 2 cut(s) 189, 605
HinfI GANTC 1 cut(s) 83
HpaII CCGG 3 cut(s) 100, 186, 266
HphI GGTGA 2 cut(s) 283, 468
Hpy166II GTNNAC 3 cut(s) 16, 445, 511
Hpy188I TCNGA 4 cut(s) 22, 91, 456, 469
Hpy188III TCNNGA 4 cut(s) 72, 329, 371, 563
Hpy8I GTNNAC 3 cut(s) 16, 445, 511
Hpy99I CGWCG 1 cut(s) 11
HpyAV CCTTC 2 cut(s) 391, 415
HpyCH4III ACNGT 2 cut(s) 209, 515
HpyCH4IV ACGT 1 cut(s) 42
HpyCH4V TGCA 4 cut(s) 40, 121, 233, 281
HpyF3I CTNAG 3 cut(s) 151, 156, 369
HpySE526I ACGT 1 cut(s) 42
Hsp92I GRCGYC 1 cut(s) 9
Hsp92II CATG 3 cut(s) 247, 410, 586
HspAI GCGC 2 cut(s) 189, 605
Kzo9I GATC 3 cut(s) 246, 373, 424
Lsp1109I GCAGC 2 cut(s) 181, 203
LweI GCATC 2 cut(s) 268, 336
MabI ACCWGGT 1 cut(s) 105
MaeI CTAG 5 cut(s) 32, 144, 489, 506, 549
MaeII ACGT 1 cut(s) 42
MaeIII GTNAC 1 cut(s) 474
MalI GATC 3 cut(s) 248, 375, 426
MbiI CCGCTC 1 cut(s) 600
MboI GATC 3 cut(s) 246, 373, 424
MboII GAAGA 2 cut(s) 78, 139
MflI RGATCY 1 cut(s) 373
MhlI GDGCHC 3 cut(s) 162, 214, 454
MlsI TGGCCA 1 cut(s) 308
MluCI AATT 5 cut(s) 168, 234, 290, 358, 493
MluNI TGGCCA 1 cut(s) 308
MmeI TCCRAC 1 cut(s) 573
MnlI CCTC 3 cut(s) 146, 233, 489
Mox20I TGGCCA 1 cut(s) 308
MscI TGGCCA 1 cut(s) 308
MseI TTAA 3 cut(s) 240, 414, 434
Msp20I TGGCCA 1 cut(s) 308
MspA1I CMGCKG 1 cut(s) 194
MspI CCGG 3 cut(s) 100, 186, 266
MspR9I CCNGG 2 cut(s) 107, 267
MvaI CCWGG 1 cut(s) 107
NciI CCSGG 1 cut(s) 267
NdeII GATC 3 cut(s) 246, 373, 424
NlaIII CATG 3 cut(s) 247, 410, 586
NlaIV GGNNCC 3 cut(s) 104, 375, 402
NmuCI GTSAC 1 cut(s) 474
NspI RCATGY 1 cut(s) 586
PfeI GAWTC 1 cut(s) 83
PkrI GCNGC 3 cut(s) 193, 196, 405
Ppu21I YACGTR 1 cut(s) 43
Psp124BI GAGCTC 2 cut(s) 162, 454
Psp6I CCWGG 1 cut(s) 105
PspGI CCWGG 1 cut(s) 105
PspN4I GGNNCC 3 cut(s) 104, 375, 402
PspPI GGNCC 1 cut(s) 263
PsrI GAACNNNNNNTAC 2 cut(s) 36, 68
PsuI RGATCY 1 cut(s) 373
PvuII CAGCTG 1 cut(s) 194
RsaI GTAC 1 cut(s) 553
RsaNI GTAC 1 cut(s) 552
SacI GAGCTC 2 cut(s) 162, 454
SaqAI TTAA 3 cut(s) 240, 414, 434
SatI GCNGC 3 cut(s) 192, 195, 404
Sau3AI GATC 3 cut(s) 246, 373, 424
Sau96I GGNCC 1 cut(s) 263
ScaI AGTACT 1 cut(s) 553
ScrFI CCNGG 2 cut(s) 107, 267
SduI GDGCHC 3 cut(s) 162, 214, 454
SexAI ACCWGGT 1 cut(s) 105
SfaNI GCATC 2 cut(s) 268, 336
SmlI CTYRAG 1 cut(s) 563
SmoI CTYRAG 1 cut(s) 563
SpeI ACTAGT 2 cut(s) 505, 548
Sse9I AATT 5 cut(s) 168, 234, 290, 358, 493
SsiI CCGC 3 cut(s) 113, 404, 600
SspMI CTAG 5 cut(s) 32, 144, 489, 506, 549
SstI GAGCTC 2 cut(s) 162, 454
StyD4I CCNGG 2 cut(s) 105, 265
TaaI ACNGT 2 cut(s) 209, 515
TaiI ACGT 1 cut(s) 45
TasI AATT 5 cut(s) 168, 234, 290, 358, 493
TatI WGTACW 1 cut(s) 551
TauI GCSGC 1 cut(s) 406
TfiI GAWTC 1 cut(s) 83
Tru1I TTAA 3 cut(s) 240, 414, 434
Tru9I TTAA 3 cut(s) 240, 414, 434
TscAI CASTG 1 cut(s) 214
TseFI GTSAC 1 cut(s) 474
TseI GCWGC 2 cut(s) 191, 194
Tsp45I GTSAC 1 cut(s) 474
TspDTI ATGAA 1 cut(s) 17
TspRI CASTG 1 cut(s) 214
XapI RAATTY 1 cut(s) 493
XceI RCATGY 1 cut(s) 586
XspI CTAG 5 cut(s) 32, 144, 489, 506, 549
ZrmI AGTACT 1 cut(s) 553
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.