AT2G39450

Dimerisation domain of Zinc Transporter

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
Physical Location & Seq
Reverse (-)
16471560 .. 16474060
2501 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G39450.1

Sequence Viewer

Length: 1185 bp
ATGGTTGAGCCAGCTAGTCCAGATTCCGACGAAGGGATCTCGCTGCTCGAGTTTCACGGTAACGGTGACCGTTCCTGGCAGTTAAATTTCGATGATTTCCAGGTTTCACCGGAACACAAGGAGAAGAAATCTCCGAGTAAACTACACAACTGTCTTGGTTGTTTGGGTCCGGAAGACAATGTGGCAGATTATTACCAGCAGCAAGTAGAGATGCTTGAGGGCTTTACTGAAATGGATGAACTTGCAGAACGTGGCTTTGTTCCTGGAATGTCAAAGGAAGAGCAGGATAATTTGGCTAAAAGCGAGACATTGGCGATTAGAATATCAAACATTGCAAACATGCTTCTTTTTGCTGCTAAAGTCTATGCTTCTGTCACTAGTGGCTCTTTAGCTATCATTGCCTCTACATTGGACTCTCTTCTTGATCTTCTTTCTGGCTTCATCCTCTGGTTTACCGCCTTCTCCATGCAGACACCCAACCCGTATCAGTATCCCATTGGCAAGAAACGCATGCAACCACTGGGAATCCTAGTCTTTGCATCAGTGATGGCAACACTTGGATTGCAGATTATCTTGGAATCTCTTCGCACAATGTTATCCAGCCACAAGGAGTTCAACCTAACAAAAGAGCAAGAGAGTTGGGTAGTTGGGATCATGCTTTCTGTTACATTGGTCAAACTGCTTCTGGTTCTTTACTGCAGATCCTTCACTAACGAGATCGTTAAAGCTTATGCTCAAGATCATTTCTTCGACGTCATCACAAACATCATTGGACTCATTGCAGTAATCCTGGCCAATTACATTGATTATTGGATTGATCCAGTTGGAGCTATCATTCTTGCATTATACACAATACGGACATGGTCAATGACGGTCTTGGAGAACGTTAACTCTCTTGTTGGGAAATCAGCTAGACCAGAGTATCTGCAGAAACTAACTTACCTGTGTTGGAACCACCATAAAGCCATTAGGCACATTGACACAGTGAGGGCATACACATTTGGCTCTCATTATTTTGTGGAGGTTGATATTGTTCTCCCAGCTGACATGCCTCTGCAAGTGGCTCACGACATTGGAGAATCGCTGCAAGAGAAGCTCGAGCTACTAGAGGAGATCGAACGGGCTTTTGTGCATCTTGATTATGAGTACACTCACAAACCTGAGCACGCTAGATCCCACTGTTAG

Protein Analysis

394

Amino Acids

44.63

Weight (kDa)

5.07

Isoelectric Point (pI)

45.2

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cation_efflux PF01545 108 - 300 6.7e-31 Cation efflux transmembrane domain
ZT_dimer PF16916 319 - 380 2.6e-07 Cation efflux protein, cytoplasmic domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 756
AccIII TCCGGA 1 cut(s) 169
AciI CCGC 1 cut(s) 456
AclI AACGTT 1 cut(s) 885
AclWI GGATC 5 cut(s) 44, 659, 696, 812, 1167
AcoI YGGCCR 1 cut(s) 792
AcsI RAATTY 1 cut(s) 85
AcyI GRCGYC 1 cut(s) 753
AfaI GTAC 1 cut(s) 1148
AfiI CCNNNNNNNGG 1 cut(s) 33
AgsI TTSAA 1 cut(s) 616
AhlI ACTAGT 1 cut(s) 377
AjnI CCWGG 4 cut(s) 74, 99, 262, 789
AluBI AGCT 8 cut(s) 14, 392, 728, 830, 911, 1043, 1096, 1102
AluI AGCT 8 cut(s) 14, 392, 728, 830, 911, 1043, 1096, 1102
Alw21I GWGCWC 1 cut(s) 1167
Alw26I GTCTC 1 cut(s) 299
AlwI GGATC 5 cut(s) 44, 659, 696, 812, 1167
Ama87I CYCGRG 2 cut(s) 47, 1097
Aor13HI TCCGGA 1 cut(s) 169
AoxI GGCC 1 cut(s) 792
ApeKI GCWGC 4 cut(s) 43, 199, 353, 1084
ApoI RAATTY 1 cut(s) 85
Asp700I GAANNNNTTC 1 cut(s) 582
AspS9I GGNCC 1 cut(s) 167
AsuHPI GGTGA 2 cut(s) 77, 99
AvaI CYCGRG 2 cut(s) 47, 1097
AvaII GGWCC 1 cut(s) 167
BaeI ACNNNNGTAYC 2 cut(s) 905, 938
BalI TGGCCA 1 cut(s) 794
BbsI GAAGAC 1 cut(s) 180
Bbv12I GWGCWC 1 cut(s) 1167
BbvI GCAGC 4 cut(s) 30, 211, 340, 1071
BccI CCATC 1 cut(s) 541
BciT130I CCWGG 4 cut(s) 76, 101, 264, 791
BciVI GTATCC 1 cut(s) 501
BcoDI GTCTC 1 cut(s) 299
BcuI ACTAGT 1 cut(s) 377
BfaI CTAG 6 cut(s) 15, 378, 530, 912, 1106, 1170
BfmI CTRYAG 2 cut(s) 697, 926
BfuI GTATCC 1 cut(s) 501
BisI GCNGC 4 cut(s) 44, 200, 354, 1085
BlsI GCNGC 4 cut(s) 45, 201, 355, 1086
Bme1390I CCNGG 4 cut(s) 76, 101, 264, 791
Bme18I GGWCC 1 cut(s) 167
BmeT110I CYCGRG 2 cut(s) 47, 1097
BmgT120I GGNCC 1 cut(s) 167
BmiI GGNNCC 2 cut(s) 168, 953
BmrFI CCNGG 4 cut(s) 76, 101, 264, 791
BmrI ACTGGG 1 cut(s) 530
BmsI GCATC 3 cut(s) 201, 548, 1141
BmuI ACTGGG 1 cut(s) 530
BpiI GAAGAC 1 cut(s) 180
Bpu10I CCTNAGC 1 cut(s) 1161
BpuEI CTTGAG 2 cut(s) 236, 720
BsaHI GRCGYC 1 cut(s) 753
BsaWI WCCGGW 2 cut(s) 109, 169
Bsc4I CCNNNNNNNGG 1 cut(s) 33
Bse1I ACTGG 2 cut(s) 525, 821
Bse3DI GCAATG 3 cut(s) 330, 396, 777
BseAI TCCGGA 1 cut(s) 169
BseBI CCWGG 4 cut(s) 76, 101, 264, 791
BseGI GGATG 2 cut(s) 241, 441
BseLI CCNNNNNNNGG 1 cut(s) 33
BseMI GCAATG 3 cut(s) 330, 396, 777
BseMII CTCAG 1 cut(s) 1152
BseNI ACTGG 2 cut(s) 525, 821
BseRI GAGGAG 1 cut(s) 1124
BseXI GCAGC 4 cut(s) 30, 211, 340, 1071
BseYI CCCAGC 1 cut(s) 1039
BshFI GGCC 1 cut(s) 794
BsiHKAI GWGCWC 1 cut(s) 1167
BsiHKCI CYCGRG 2 cut(s) 47, 1097
BsiSI CCGG 2 cut(s) 110, 170
BslI CCNNNNNNNGG 1 cut(s) 33
BsmAI GTCTC 1 cut(s) 299
BsnI GGCC 1 cut(s) 794
BsoBI CYCGRG 2 cut(s) 47, 1097
Bsp1286I GDGCHC 1 cut(s) 1167
Bsp13I TCCGGA 1 cut(s) 169
Bsp143I GATC 9 cut(s) 36, 424, 651, 701, 717, 739, 817, 1113, 1172
BspACI CCGC 1 cut(s) 456
BspANI GGCC 1 cut(s) 794
BspCNI CTCAG 1 cut(s) 1153
BspEI TCCGGA 1 cut(s) 169
BspLI GGNNCC 2 cut(s) 168, 953
BspMAI CTGCAG 2 cut(s) 701, 930
BspPI GGATC 5 cut(s) 44, 659, 696, 812, 1167
BspQI GCTCTTC 1 cut(s) 273
BsrDI GCAATG 3 cut(s) 330, 396, 777
BsrI ACTGG 2 cut(s) 525, 821
BssMI GATC 9 cut(s) 36, 424, 651, 701, 717, 739, 817, 1113, 1172
BssNI GRCGYC 1 cut(s) 753
Bst2UI CCWGG 4 cut(s) 76, 101, 264, 791
Bst4CI ACNGT 7 cut(s) 59, 65, 71, 152, 874, 985, 1181
Bst6I CTCTTC 3 cut(s) 273, 423, 588
BstACI GRCGYC 1 cut(s) 753
BstC8I GCNNGC 3 cut(s) 12, 512, 1167
BstDEI CTNAG 1 cut(s) 1161
BstEII GGTNACC 1 cut(s) 65
BstF5I GGATG 2 cut(s) 241, 441
BstKTI GATC 9 cut(s) 39, 427, 654, 704, 720, 742, 820, 1116, 1175
BstMAI GTCTC 1 cut(s) 299
BstMBI GATC 9 cut(s) 36, 424, 651, 701, 717, 739, 817, 1113, 1172
BstMWI GCNNNNNNNGC 3 cut(s) 398, 507, 1093
BstNI CCWGG 4 cut(s) 76, 101, 264, 791
BstNSI RCATGY 3 cut(s) 343, 514, 1051
BstPI GGTNACC 1 cut(s) 65
BstSCI CCNGG 4 cut(s) 74, 99, 262, 789
BstSFI CTRYAG 2 cut(s) 697, 926
BstV1I GCAGC 4 cut(s) 30, 211, 340, 1071
BstV2I GAAGAC 1 cut(s) 180
BstX2I RGATCY 3 cut(s) 36, 701, 1172
BstYI RGATCY 3 cut(s) 36, 701, 1172
BsuI GTATCC 1 cut(s) 501
BsuRI GGCC 1 cut(s) 794
BtsCI GGATG 2 cut(s) 241, 441
BtsIMutI CAGTG 4 cut(s) 518, 549, 990, 1177
Cac8I GCNNGC 3 cut(s) 12, 512, 1167
Cfr13I GGNCC 1 cut(s) 167
Csp6I GTAC 1 cut(s) 1147
CviAII CATG 6 cut(s) 340, 466, 511, 655, 861, 1048
CviQI GTAC 1 cut(s) 1147
DdeI CTNAG 1 cut(s) 1161
DpnI GATC 9 cut(s) 38, 426, 653, 703, 719, 741, 819, 1115, 1174
DpnII GATC 9 cut(s) 36, 424, 651, 701, 717, 739, 817, 1113, 1172
EaeI YGGCCR 1 cut(s) 792
Eam1104I CTCTTC 3 cut(s) 273, 423, 588
EarI CTCTTC 3 cut(s) 273, 423, 588
Eco47I GGWCC 1 cut(s) 167
Eco88I CYCGRG 2 cut(s) 47, 1097
Eco91I GGTNACC 1 cut(s) 65
EcoO65I GGTNACC 1 cut(s) 65
EcoRII CCWGG 4 cut(s) 74, 99, 262, 789
FaeI CATG 6 cut(s) 343, 469, 514, 658, 864, 1051
FatI CATG 6 cut(s) 339, 465, 510, 654, 860, 1047
Fnu4HI GCNGC 4 cut(s) 44, 200, 354, 1085
FokI GGATG 2 cut(s) 248, 428
Fsp4HI GCNGC 4 cut(s) 44, 200, 354, 1085
FspBI CTAG 6 cut(s) 15, 378, 530, 912, 1106, 1170
GluI GCNGC 4 cut(s) 44, 200, 354, 1085
GsaI CCCAGC 1 cut(s) 1043
HaeIII GGCC 1 cut(s) 794
HapII CCGG 2 cut(s) 110, 170
Hin1I GRCGYC 1 cut(s) 753
Hin1II CATG 6 cut(s) 343, 469, 514, 658, 864, 1051
HincII GTYRAC 1 cut(s) 889
HindII GTYRAC 1 cut(s) 889
HindIII AAGCTT 1 cut(s) 726
HinfI GANTC 6 cut(s) 23, 413, 525, 578, 774, 1079
HpaI GTTAAC 1 cut(s) 889
HpaII CCGG 2 cut(s) 110, 170
HphI GGTGA 2 cut(s) 77, 99
Hpy166II GTNNAC 4 cut(s) 140, 453, 889, 1149
Hpy188I TCNGA 2 cut(s) 28, 135
Hpy188III TCNNGA 6 cut(s) 20, 170, 422, 737, 1067, 1136
Hpy8I GTNNAC 4 cut(s) 140, 453, 889, 1149
Hpy99I CGWCG 2 cut(s) 32, 755
HpyAV CCTTC 3 cut(s) 26, 469, 715
HpyCH4III ACNGT 7 cut(s) 59, 65, 71, 152, 874, 985, 1181
HpyCH4IV ACGT 3 cut(s) 250, 753, 885
HpyF10VI GCNNNNNNNGC 3 cut(s) 398, 507, 1093
HpyF3I CTNAG 1 cut(s) 1161
HpySE526I ACGT 3 cut(s) 250, 753, 885
Hsp92I GRCGYC 1 cut(s) 753
Hsp92II CATG 6 cut(s) 343, 469, 514, 658, 864, 1051
Kpn2I TCCGGA 1 cut(s) 169
KspAI GTTAAC 1 cut(s) 889
Kzo9I GATC 9 cut(s) 36, 424, 651, 701, 717, 739, 817, 1113, 1172
LguI GCTCTTC 1 cut(s) 273
LmnI GCTCC 1 cut(s) 827
Lsp1109I GCAGC 4 cut(s) 30, 211, 340, 1071
LweI GCATC 3 cut(s) 201, 548, 1141
MaeI CTAG 6 cut(s) 15, 378, 530, 912, 1106, 1170
MaeII ACGT 3 cut(s) 250, 753, 885
MaeIII GTNAC 4 cut(s) 59, 65, 373, 664
MalI GATC 9 cut(s) 38, 426, 653, 703, 719, 741, 819, 1115, 1174
MboI GATC 9 cut(s) 36, 424, 651, 701, 717, 739, 817, 1113, 1172
MboII GAAGA 7 cut(s) 136, 185, 290, 410, 419, 575, 739
MflI RGATCY 3 cut(s) 36, 701, 1172
MhlI GDGCHC 1 cut(s) 1167
MlsI TGGCCA 1 cut(s) 794
MluCI AATT 3 cut(s) 85, 289, 796
MluNI TGGCCA 1 cut(s) 794
MlyI GAGTC 2 cut(s) 407, 768
MmeI TCCRAC 3 cut(s) 51, 805, 929
MnlI CCTC 7 cut(s) 211, 412, 455, 981, 1015, 1062, 1102
Mox20I TGGCCA 1 cut(s) 794
MroI TCCGGA 1 cut(s) 169
MroXI GAANNNNTTC 1 cut(s) 582
MscI TGGCCA 1 cut(s) 794
MseI TTAA 3 cut(s) 83, 723, 888
Msp20I TGGCCA 1 cut(s) 794
MspA1I CMGCKG 1 cut(s) 1043
MspI CCGG 2 cut(s) 110, 170
MspR9I CCNGG 4 cut(s) 76, 101, 264, 791
MvaI CCWGG 4 cut(s) 76, 101, 264, 791
MwoI GCNNNNNNNGC 3 cut(s) 398, 507, 1093
NdeII GATC 9 cut(s) 36, 424, 651, 701, 717, 739, 817, 1113, 1172
NlaIII CATG 6 cut(s) 343, 469, 514, 658, 864, 1051
NlaIV GGNNCC 2 cut(s) 168, 953
NmuCI GTSAC 2 cut(s) 65, 373
NspI RCATGY 3 cut(s) 343, 514, 1051
PaeI GCATGC 1 cut(s) 514
PaeR7I CTCGAG 2 cut(s) 47, 1097
PciSI GCTCTTC 1 cut(s) 273
PdmI GAANNNNTTC 1 cut(s) 582
PfeI GAWTC 4 cut(s) 23, 525, 578, 1079
PflFI GACNNNGTC 1 cut(s) 862
PfoI TCCNGGA 1 cut(s) 262
PkrI GCNGC 4 cut(s) 45, 201, 355, 1086
PleI GAGTC 2 cut(s) 407, 768
PpsI GAGTC 2 cut(s) 407, 768
Psp1406I AACGTT 1 cut(s) 885
Psp6I CCWGG 4 cut(s) 74, 99, 262, 789
PspEI GGTNACC 1 cut(s) 65
PspFI CCCAGC 1 cut(s) 1039
PspGI CCWGG 4 cut(s) 74, 99, 262, 789
PspN4I GGNNCC 2 cut(s) 168, 953
PspPI GGNCC 1 cut(s) 167
PspXI VCTCGAGB 2 cut(s) 47, 1097
PstI CTGCAG 2 cut(s) 701, 930
PsuI RGATCY 3 cut(s) 36, 701, 1172
PsyI GACNNNGTC 1 cut(s) 862
PvuII CAGCTG 1 cut(s) 1043
RsaI GTAC 1 cut(s) 1148
RsaNI GTAC 1 cut(s) 1147
SapI GCTCTTC 1 cut(s) 273
SaqAI TTAA 3 cut(s) 83, 723, 888
SatI GCNGC 4 cut(s) 44, 200, 354, 1085
Sau3AI GATC 9 cut(s) 36, 424, 651, 701, 717, 739, 817, 1113, 1172
Sau96I GGNCC 1 cut(s) 167
SchI GAGTC 2 cut(s) 407, 768
ScrFI CCNGG 4 cut(s) 76, 101, 264, 791
SduI GDGCHC 1 cut(s) 1167
SfaNI GCATC 3 cut(s) 201, 548, 1141
SfcI CTRYAG 2 cut(s) 697, 926
Sfr274I CTCGAG 2 cut(s) 47, 1097
SinI GGWCC 1 cut(s) 167
SlaI CTCGAG 2 cut(s) 47, 1097
SmlI CTYRAG 4 cut(s) 47, 215, 735, 1097
SmoI CTYRAG 4 cut(s) 47, 215, 735, 1097
SpeI ACTAGT 1 cut(s) 377
SphI GCATGC 1 cut(s) 514
Sse9I AATT 3 cut(s) 85, 289, 796
SsiI CCGC 1 cut(s) 456
SspMI CTAG 6 cut(s) 15, 378, 530, 912, 1106, 1170
StyD4I CCNGG 4 cut(s) 74, 99, 262, 789
TaaI ACNGT 7 cut(s) 59, 65, 71, 152, 874, 985, 1181
TaiI ACGT 3 cut(s) 253, 756, 888
TaqI TCGA 5 cut(s) 48, 90, 750, 1098, 1116
TasI AATT 3 cut(s) 85, 289, 796
TatI WGTACW 1 cut(s) 1146
TfiI GAWTC 4 cut(s) 23, 525, 578, 1079
Tru1I TTAA 3 cut(s) 83, 723, 888
Tru9I TTAA 3 cut(s) 83, 723, 888
TscAI CASTG 4 cut(s) 525, 549, 990, 1184
TseFI GTSAC 2 cut(s) 65, 373
TseI GCWGC 4 cut(s) 43, 199, 353, 1084
Tsp45I GTSAC 2 cut(s) 65, 373
TspDTI ATGAA 2 cut(s) 252, 430
TspGWI ACGGA 1 cut(s) 871
TspRI CASTG 4 cut(s) 525, 549, 990, 1184
Tth111I GACNNNGTC 1 cut(s) 862
VpaK11BI GGWCC 1 cut(s) 167
XapI RAATTY 1 cut(s) 85
XceI RCATGY 3 cut(s) 343, 514, 1051
XhoI CTCGAG 2 cut(s) 47, 1097
XmnI GAANNNNTTC 1 cut(s) 582
XspI CTAG 6 cut(s) 15, 378, 530, 912, 1106, 1170
ZraI GACGTC 1 cut(s) 754
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.