Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8495291.1

Orthogroup ID

OG0001629

Physical Location & Seq

Genomic Coordinates Reverse (-)

75 .. 2541

Gene Structure 2467 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8495291.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 846 bp

atggctctttttgcagctaaagtttatgcgtcttacagaagtggttcattagccattattgcatccacactggactcattgcttgatcttttgtctggcttcatcctgtggtttactgcattctccatgcaaaccccgaacccttatcagtatccaattgggaagagacgtatgcagccgttgggaatccttgtttttgcttctgttatggcaacgctgggactgcagatcatcttagagtctatgcgcaccctgatttcagatgaggatgtgttcagcttgaccaaagatcaagagcgatgggttgtgggtattatgctcagtgtcactttggtgaaattgcttctgatgctttattgccgcactttcaccaacgaaattgttaaagcctatgcccaagatcatttctttgatgttatcaccaacataattggtctggttgctgtgctccttgctaattactttgatgattggatggaccctgttggagctataattctggctttgtacaccattcgcacctggtcaatgactgtcttggaaaatgtgaattccctagttggaaaatcagctgctccagaatacctacaaaaactgacatacctttgctggaaccatcacaaggcgatacgccatatcgacacagtccgtgcatacacctttggctcacactactttgtcgaggttgacattgtcctgccagcaaccatgcccttacaagaggctcatgacataggggaagcgctgcaggagaagctggagctgctgcctgaaatcgagcgtgcctttgtccatctagactatgaattcagtcacaagcccgagcatgcacaatcacactcttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000041 GO:0000139 GO:0003674 GO:0005215 GO:0005384 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005770 GO:0005794 GO:0006810 GO:0006811 GO:0006812 GO:0006828 GO:0006873 GO:0006875 GO:0008150 GO:0008324 GO:0009987 GO:0010008 GO:0010035 GO:0010038 GO:0010042 GO:0010486 GO:0012505 GO:0015075 GO:0015077 GO:0015078 GO:0015291 GO:0015297 GO:0015298 GO:0015299 GO:0015318 GO:0015491 GO:0015672 GO:0016020 GO:0019725 GO:0022804 GO:0022857 GO:0022890 GO:0030001 GO:0030003 GO:0030026 GO:0031090 GO:0031410 GO:0031902 GO:0031982 GO:0031984 GO:0034220 GO:0042221 GO:0042592 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044431 GO:0044433 GO:0044440 GO:0044444 GO:0044446 GO:0044464 GO:0046688 GO:0046873 GO:0046915 GO:0046916 GO:0048878 GO:0050801 GO:0050896 GO:0051139 GO:0051179 GO:0051234 GO:0055065 GO:0055071 GO:0055076 GO:0055080 GO:0055082 GO:0055085 GO:0065007 GO:0065008 GO:0071421 GO:0097708 GO:0098588 GO:0098655 GO:0098660 GO:0098662 GO:0098771 GO:0098791 GO:0098805 GO:0099516 GO:1902600

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cation_efflux ZT_dimer

Protein Analysis

281

Amino Acids

31.93

Weight (kDa)

5.52

Isoelectric Point (pI)

43.55

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001629)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G39450
fragaria_vesca	FvH4_3g14571 FvH4_3g14571 FvH4_7g21220 FvH4_7g21220
malus_domestica	MD01G1120600.v1.1 MD05G1235000.v1.1 MD07G1190000.v1.1
prunus_persica	Prupe.2G227500_v2.0.a1 Prupe.2G227500_v2.0.a1 Prupe.2G227500_v2.0.a1 Prupe.2G227500_v2.0.a1 Prupe.2G227500_v2.0.a1 Prupe.4G131200_v2.0.a1
pyrus_communis	pycom01g14720 pycom05g21190 pycom07g17960
rosa_chinensis	RchiOBHm_Chr1g0365671 RchiOBHm_Chr5g0024031 RchiOBHm_Chr5g0024041
rosa_laevigata	RLG00000032756
rosa_multiflora	Rmu_co8495291.1_g000001 Rmu_sc0002093.1_g000006 Rmu_sc0011761.1_g000003 Rmu_sc0011761.1_g000004 Rmu_sc0023483.1_g000001
rosa_roxburghii	Rroxscaffold_1G00055200 Rroxscaffold_1G00055210 Rroxscaffold_4G00291100
rosa_rugosa	Rorug01G0322400 Rorug01G0322500 Rorug05G0081100 Rorug05G0081100 Rorug05G0081200
rosa_samantha	Rh1AG331200 Rh1BG292600 Rh1CG309200 Rh1DG324200 Rh5AG171400 Rh5AG171500 Rh5BG168100 Rh5BG168200 Rh5CG183600 Rh5CG183700 Rh5DG170200 Rh5DG170300
rosa_wichuraiana	Rw1G029420 Rw5G015510 Rw5G015520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	248
AciI	CCGC	1 cut(s)	361
AcsI	RAATTY	2 cut(s)	550, 806
AfaI	GTAC	1 cut(s)	509
AfeI	AGCGCT	1 cut(s)	744
AfiI	CCNNNNNNNGG	1 cut(s)	622
AjnI	CCWGG	1 cut(s)	521
AleI	CACNNNNGTG	1 cut(s)	332
AluBI	AGCT	6 cut(s)	17, 279, 491, 572, 757, 763
AluI	AGCT	6 cut(s)	17, 279, 491, 572, 757, 763
Alw21I	GWGCWC	1 cut(s)	450
Alw26I	GTCTC	1 cut(s)	160
Ama87I	CYCGRG	1 cut(s)	821
Aor51HI	AGCGCT	1 cut(s)	744
ApeKI	GCWGC	6 cut(s)	14, 175, 572, 745, 763, 766
ApoI	RAATTY	2 cut(s)	550, 806
Asp700I	GAANNNNTTC	1 cut(s)	43
AspLEI	GCGC	2 cut(s)	249, 745
AspS9I	GGNCC	1 cut(s)	478
AsuHPI	GGTGA	3 cut(s)	346, 361, 412
AvaI	CYCGRG	1 cut(s)	821
AvaII	GGWCC	1 cut(s)	478
Bbv12I	GWGCWC	1 cut(s)	450
BbvI	GCAGC	6 cut(s)	26, 187, 559, 732, 750, 753
BccI	CCATC	4 cut(s)	294, 469, 624, 801
BceAI	ACGGC	1 cut(s)	163
BciT130I	CCWGG	1 cut(s)	523
BciVI	GTATCC	1 cut(s)	162
BcoDI	GTCTC	1 cut(s)	160
BfaI	CTAG	2 cut(s)	557, 797
BfmI	CTRYAG	2 cut(s)	224, 746
BfoI	RGCGCY	1 cut(s)	746
BfuI	GTATCC	1 cut(s)	162
BisI	GCNGC	7 cut(s)	15, 176, 361, 573, 746, 764, 767
BlsI	GCNGC	7 cut(s)	16, 177, 362, 574, 747, 765, 768
Bme1390I	CCNGG	1 cut(s)	523
Bme18I	GGWCC	1 cut(s)	478
BmeT110I	CYCGRG	1 cut(s)	821
BmgT120I	GGNCC	1 cut(s)	478
BmiI	GGNNCC	2 cut(s)	480, 614
BmrFI	CCNGG	1 cut(s)	523
BmsI	GCATC	2 cut(s)	71, 339
BpmI	CTGGAG	2 cut(s)	561, 779
Bsc4I	CCNNNNNNNGG	1 cut(s)	622
Bse1I	ACTGG	1 cut(s)	75
Bse3DI	GCAATG	1 cut(s)	77
BseBI	CCWGG	1 cut(s)	523
BseGI	GGATG	4 cut(s)	62, 102, 274, 480
BseLI	CCNNNNNNNGG	1 cut(s)	622
BseMI	GCAATG	1 cut(s)	77
BseMII	CTCAG	1 cut(s)	334
BseNI	ACTGG	1 cut(s)	75
BseXI	GCAGC	6 cut(s)	26, 187, 559, 732, 750, 753
BseYI	CCCAGC	1 cut(s)	217
BsiHKAI	GWGCWC	1 cut(s)	450
BsiHKCI	CYCGRG	1 cut(s)	821
BslFI	GGGAC	1 cut(s)	234
BslI	CCNNNNNNNGG	1 cut(s)	622
BsmAI	GTCTC	1 cut(s)	160
BsmBI	CGTCTC	1 cut(s)	160
BsmFI	GGGAC	1 cut(s)	234
BsmI	GAATGC	1 cut(s)	119
BsoBI	CYCGRG	1 cut(s)	821
Bsp1286I	GDGCHC	1 cut(s)	450
Bsp1407I	TGTACA	1 cut(s)	507
Bsp143I	GATC	4 cut(s)	85, 228, 289, 400
BspACI	CCGC	1 cut(s)	361
BspCNI	CTCAG	1 cut(s)	333
BspHI	TCATGA	1 cut(s)	727
BspLI	GGNNCC	2 cut(s)	480, 614
BspMAI	CTGCAG	2 cut(s)	228, 750
BsrDI	GCAATG	1 cut(s)	77
BsrGI	TGTACA	1 cut(s)	507
BsrI	ACTGG	1 cut(s)	75
BssMI	GATC	4 cut(s)	85, 228, 289, 400
Bst2UI	CCWGG	1 cut(s)	523
Bst4CI	ACNGT	2 cut(s)	535, 646
Bst6I	CTCTTC	1 cut(s)	158
BstAUI	TGTACA	1 cut(s)	507
BstC8I	GCNNGC	3 cut(s)	702, 783, 828
BstDEI	CTNAG	3 cut(s)	235, 320, 843
BstF5I	GGATG	4 cut(s)	62, 102, 274, 480
BstH2I	RGCGCY	1 cut(s)	746
BstHHI	GCGC	2 cut(s)	249, 745
BstKTI	GATC	4 cut(s)	88, 231, 292, 403
BstMAI	GTCTC	1 cut(s)	160
BstMBI	GATC	4 cut(s)	85, 228, 289, 400
BstMWI	GCNNNNNNNGC	6 cut(s)	11, 59, 223, 349, 754, 763
BstNI	CCWGG	1 cut(s)	523
BstNSI	RCATGY	1 cut(s)	830
BstSCI	CCNGG	1 cut(s)	521
BstSFI	CTRYAG	2 cut(s)	224, 746
BstV1I	GCAGC	6 cut(s)	26, 187, 559, 732, 750, 753
BsuI	GTATCC	1 cut(s)	162
BtgZI	GCGATG	1 cut(s)	313
BtsCI	GGATG	4 cut(s)	62, 102, 274, 480
BtsIMutI	CAGTG	2 cut(s)	68, 328
Cac8I	GCNNGC	3 cut(s)	702, 783, 828
CciI	TCATGA	1 cut(s)	727
CfoI	GCGC	2 cut(s)	249, 745
Cfr13I	GGNCC	1 cut(s)	478
CseI	GACGC	1 cut(s)	18
CsiI	ACCWGGT	1 cut(s)	521
Csp6I	GTAC	1 cut(s)	508
CviAII	CATG	4 cut(s)	127, 709, 728, 827
CviQI	GTAC	1 cut(s)	508
DdeI	CTNAG	3 cut(s)	235, 320, 843
DpnI	GATC	4 cut(s)	87, 230, 291, 402
DpnII	GATC	4 cut(s)	85, 228, 289, 400
Eam1104I	CTCTTC	1 cut(s)	158
EarI	CTCTTC	1 cut(s)	158
Eco47I	GGWCC	1 cut(s)	478
Eco47III	AGCGCT	1 cut(s)	744
Eco88I	CYCGRG	1 cut(s)	821
EcoRI	GAATTC	2 cut(s)	550, 806
EcoRII	CCWGG	1 cut(s)	521
Esp3I	CGTCTC	1 cut(s)	160
FaeI	CATG	4 cut(s)	130, 712, 731, 830
FaqI	GGGAC	1 cut(s)	234
FatI	CATG	4 cut(s)	126, 708, 727, 826
Fnu4HI	GCNGC	7 cut(s)	15, 176, 361, 573, 746, 764, 767
FokI	GGATG	4 cut(s)	49, 89, 281, 487
Fsp4HI	GCNGC	7 cut(s)	15, 176, 361, 573, 746, 764, 767
FspAI	RTGCGCAY	1 cut(s)	248
FspBI	CTAG	2 cut(s)	557, 797
FspI	TGCGCA	1 cut(s)	248
GlaI	GCGC	2 cut(s)	248, 744
GluI	GCNGC	7 cut(s)	15, 176, 361, 573, 746, 764, 767
GsaI	CCCAGC	1 cut(s)	221
GsuI	CTGGAG	2 cut(s)	561, 779
HaeII	RGCGCY	1 cut(s)	746
HgaI	GACGC	1 cut(s)	18
HhaI	GCGC	2 cut(s)	249, 745
Hin1II	CATG	4 cut(s)	130, 712, 731, 830
Hin6I	GCGC	2 cut(s)	247, 743
HinP1I	GCGC	2 cut(s)	247, 743
HincII	GTYRAC	1 cut(s)	688
HindII	GTYRAC	1 cut(s)	688
HinfI	GANTC	3 cut(s)	74, 186, 239
HphI	GGTGA	3 cut(s)	346, 361, 412
Hpy166II	GTNNAC	3 cut(s)	114, 510, 688
Hpy188I	TCNGA	2 cut(s)	262, 348
Hpy188III	TCNNGA	4 cut(s)	293, 578, 728, 797
Hpy8I	GTNNAC	3 cut(s)	114, 510, 688
HpyCH4III	ACNGT	2 cut(s)	535, 646
HpyCH4IV	ACGT	1 cut(s)	169
HpyCH4V	TGCA	9 cut(s)	14, 62, 119, 130, 175, 226, 653, 748, 830
HpyF10VI	GCNNNNNNNGC	6 cut(s)	11, 59, 223, 349, 754, 763
HpyF3I	CTNAG	3 cut(s)	235, 320, 843
HpySE526I	ACGT	1 cut(s)	169
Hsp92II	CATG	4 cut(s)	130, 712, 731, 830
HspAI	GCGC	2 cut(s)	247, 743
Kzo9I	GATC	4 cut(s)	85, 228, 289, 400
LmnI	GCTCC	4 cut(s)	453, 488, 580, 760
Lsp1109I	GCAGC	6 cut(s)	26, 187, 559, 732, 750, 753
LweI	GCATC	2 cut(s)	71, 339
MabI	ACCWGGT	1 cut(s)	521
MaeI	CTAG	2 cut(s)	557, 797
MaeII	ACGT	1 cut(s)	169
MaeIII	GTNAC	2 cut(s)	325, 812
MalI	GATC	4 cut(s)	87, 230, 291, 402
MboI	GATC	4 cut(s)	85, 228, 289, 400
MboII	GAAGA	1 cut(s)	175
MfeI	CAATTG	1 cut(s)	156
MhlI	GDGCHC	1 cut(s)	450
MluCI	AATT	8 cut(s)	156, 338, 378, 429, 457, 495, 550, 806
MlyI	GAGTC	2 cut(s)	68, 248
MmeI	TCCRAC	2 cut(s)	466, 541
MnlI	CCTC	3 cut(s)	259, 676, 715
MroXI	GAANNNNTTC	1 cut(s)	43
MseI	TTAA	1 cut(s)	384
MslI	CAYNNNNRTG	1 cut(s)	332
MspA1I	CMGCKG	1 cut(s)	572
MspR9I	CCNGG	1 cut(s)	523
MunI	CAATTG	1 cut(s)	156
Mva1269I	GAATGC	1 cut(s)	119
MvaI	CCWGG	1 cut(s)	523
MwoI	GCNNNNNNNGC	6 cut(s)	11, 59, 223, 349, 754, 763
NdeII	GATC	4 cut(s)	85, 228, 289, 400
NlaIII	CATG	4 cut(s)	130, 712, 731, 830
NlaIV	GGNNCC	2 cut(s)	480, 614
NmuCI	GTSAC	2 cut(s)	325, 812
NsbI	TGCGCA	1 cut(s)	248
NspI	RCATGY	1 cut(s)	830
OliI	CACNNNNGTG	1 cut(s)	332
PaeI	GCATGC	1 cut(s)	830
PagI	TCATGA	1 cut(s)	727
PctI	GAATGC	1 cut(s)	119
PdmI	GAANNNNTTC	1 cut(s)	43
PfeI	GAWTC	1 cut(s)	186
PflFI	GACNNNGTC	2 cut(s)	644, 692
PkrI	GCNGC	7 cut(s)	16, 177, 362, 574, 747, 765, 768
PleI	GAGTC	2 cut(s)	68, 247
PpsI	GAGTC	2 cut(s)	68, 247
Psp6I	CCWGG	1 cut(s)	521
PspFI	CCCAGC	1 cut(s)	217
PspGI	CCWGG	1 cut(s)	521
PspN4I	GGNNCC	2 cut(s)	480, 614
PspPI	GGNCC	1 cut(s)	478
PstI	CTGCAG	2 cut(s)	228, 750
PsyI	GACNNNGTC	2 cut(s)	644, 692
PvuII	CAGCTG	1 cut(s)	572
RsaI	GTAC	1 cut(s)	509
RsaNI	GTAC	1 cut(s)	508
RseI	CAYNNNNRTG	1 cut(s)	332
SaqAI	TTAA	1 cut(s)	384
SatI	GCNGC	7 cut(s)	15, 176, 361, 573, 746, 764, 767
Sau3AI	GATC	4 cut(s)	85, 228, 289, 400
Sau96I	GGNCC	1 cut(s)	478
SchI	GAGTC	2 cut(s)	68, 248
ScrFI	CCNGG	1 cut(s)	523
SduI	GDGCHC	1 cut(s)	450
SexAI	ACCWGGT	1 cut(s)	521
SfaNI	GCATC	2 cut(s)	71, 339
SfcI	CTRYAG	2 cut(s)	224, 746
SinI	GGWCC	1 cut(s)	478
SmiMI	CAYNNNNRTG	1 cut(s)	332
SphI	GCATGC	1 cut(s)	830
Sse9I	AATT	8 cut(s)	156, 338, 378, 429, 457, 495, 550, 806
SsiI	CCGC	1 cut(s)	361
SspMI	CTAG	2 cut(s)	557, 797
StyD4I	CCNGG	1 cut(s)	521
TaaI	ACNGT	2 cut(s)	535, 646
TaiI	ACGT	1 cut(s)	172
TaqI	TCGA	3 cut(s)	639, 681, 777
TasI	AATT	8 cut(s)	156, 338, 378, 429, 457, 495, 550, 806
TatI	WGTACW	1 cut(s)	507
TauI	GCSGC	1 cut(s)	363
TfiI	GAWTC	1 cut(s)	186
Tru1I	TTAA	1 cut(s)	384
Tru9I	TTAA	1 cut(s)	384
TscAI	CASTG	2 cut(s)	75, 328
TseFI	GTSAC	2 cut(s)	325, 812
TseI	GCWGC	6 cut(s)	14, 175, 572, 745, 763, 766
Tsp45I	GTSAC	2 cut(s)	325, 812
TspDTI	ATGAA	3 cut(s)	36, 91, 819
TspGWI	ACGGA	1 cut(s)	638
TspRI	CASTG	2 cut(s)	75, 328
Tth111I	GACNNNGTC	2 cut(s)	644, 692
VpaK11BI	GGWCC	1 cut(s)	478
XapI	RAATTY	2 cut(s)	550, 806
XbaI	TCTAGA	1 cut(s)	796
XceI	RCATGY	1 cut(s)	830
XmnI	GAANNNNTTC	1 cut(s)	43
XspI	CTAG	2 cut(s)	557, 797

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.