FvH4_7g21220

Metal tolerance protein

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
Physical Location & Seq
Reverse (-)
17069167 .. 17073269
4103 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g21220.t2

Sequence Viewer

Length: 1182 bp
ATGGCGTCGCCGGTGACATCCGACCACGACGAGGCGCAGTCGCTGCTGCGAGATTCCGGCAATGTCGACGGCTCGTGGCGGTTGAACTTCGAGAGCTTCCAGGTGGCCTCGGAGCACAAGGAGAAGCAACCGCGGGCCTTCCATGACTGTCTTGGAGTTAAAGGCCCGGAGGATAATGTGGCAGAGTATTATCAGCAGCAGGTGGAAATGCTCGAAGGGTTTAATGAAATGGATGCCTTAGCGGAGAGGGGTTTTATTCCCGGAATGTCAAAGGAAGAGCGGGATAATTTGGCTAAAAGTGAAACCTTTGCCATCAGAATATCAAATGTTGCAAACATGGCTCTTTTTGCAGCTAAAGTTTACGCATCTTACAGAAGTGGTTCATTAGCCATTATTGCATCCACACTGGACTCATTGCTTGATCTTTTGTCTGGCTTCATCCTGTGGTTTACTGCATTCTCGATGCAAACCCCAAACCCTTATCAGTATCCTATTGGAAAGAGACGTATGCAGCCGTTGGGAATCCTTGTTTTTGCTTCTGTCATGGCAACTCTGGGACTGCAGATCATCTTAGAGTCTATGCGCACCTTATTTTCTGATGAAGATGAGTTCAACTTAACCAAGGATCAAGAGCGATGGGTTGTGGGTATTATGCTTGGTGTCACTCTGGTGAAATTGCTTTTGATGCTTTATTGCCGCACTTTCTCCAACGAAATAGTCAAAGCCTATGCCCAGGATCATTTCTTTGATGTTATCACCAACATCATTGGTCTGGTTGCTGTGCTCCTTGCTAATTACTTTGATGAATGGATGGACCCTGTTGGAGCAATTATTCTGGCCTTGTACACTATTCGCACCTGGTCATTGACTGTCTTGGAAAATGTGAATTCCCTAGTTGGAAAATCAGCTGCTCCAGAATACCTACAAAAACTGACATACCTGTGCTGGAACCATCACAAGGCGATACGCCATATCGACACAGTCCGTGCATACACCTTTGGCTCACACTACTTTGTCGAGGTTGACATTGTCCTGCCAGCAGCCATGCCCTTACAAGAGGCTCATGACATAGGGGAAGCGTTGCAGGAGAAGCTCGAGCTCCTGCCTGAAATCGAGCGCGCCTTTGTCCATCTAGACTACGAGTTCAGTCACAAGCCCGAGCATGCGCAGTCACACTCTTAG

Protein Analysis

394

Amino Acids

44.52

Weight (kDa)

5.03

Isoelectric Point (pI)

43.68

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cation_efflux PF01545 56 - 248 1.9e-31 Cation efflux transmembrane domain
ZT_dimer PF16916 267 - 328 3.4e-08 Cation efflux protein, cytoplasmic domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 190
Acc16I TGCGCA 2 cut(s) 584, 1167
Acc36I ACCTGC 1 cut(s) 190
AccBSI CCGCTC 1 cut(s) 280
AccI GTMKAC 1 cut(s) 66
AccII CGCG 2 cut(s) 133, 1119
AciI CCGC 6 cut(s) 79, 131, 133, 242, 280, 697
AclWI GGATC 2 cut(s) 633, 744
AcsI RAATTY 1 cut(s) 886
AcyI GRCGYC 1 cut(s) 5
AfaI GTAC 1 cut(s) 845
AfiI CCNNNNNNNGG 2 cut(s) 31, 958
AgsI TTSAA 2 cut(s) 85, 613
AjnI CCWGG 3 cut(s) 99, 732, 857
AleI CACNNNNGTG 1 cut(s) 668
AluBI AGCT 5 cut(s) 96, 353, 908, 1093, 1099
AluI AGCT 5 cut(s) 96, 353, 908, 1093, 1099
Alw21I GWGCWC 3 cut(s) 117, 786, 1101
Alw26I GTCTC 1 cut(s) 496
AlwI GGATC 2 cut(s) 633, 744
AlwNI CAGNNNCTG 1 cut(s) 43
Ama87I CYCGRG 2 cut(s) 1094, 1157
AoxI GGCC 4 cut(s) 105, 135, 163, 837
ApeKI GCWGC 7 cut(s) 43, 46, 196, 350, 511, 908, 1040
ApoI RAATTY 1 cut(s) 886
Asp700I GAANNNNTTC 1 cut(s) 379
AspLEI GCGC 5 cut(s) 37, 585, 1119, 1121, 1168
AspS9I GGNCC 3 cut(s) 135, 164, 814
AsuC2I CCSGG 2 cut(s) 167, 261
AsuHPI GGTGA 3 cut(s) 25, 682, 748
AvaI CYCGRG 2 cut(s) 1094, 1157
AvaII GGWCC 1 cut(s) 814
BanII GRGCYC 1 cut(s) 1101
BauI CACGAG 1 cut(s) 73
Bbv12I GWGCWC 3 cut(s) 117, 786, 1101
BbvI GCAGC 7 cut(s) 30, 33, 208, 362, 523, 895, 1052
BccI CCATC 5 cut(s) 320, 630, 805, 960, 1137
BceAI ACGGC 2 cut(s) 85, 499
BciT130I CCWGG 3 cut(s) 101, 734, 859
BciVI GTATCC 1 cut(s) 498
BcnI CCSGG 2 cut(s) 167, 261
BcoDI GTCTC 1 cut(s) 496
BfaI CTAG 2 cut(s) 893, 1133
BfmI CTRYAG 1 cut(s) 560
BfuAI ACCTGC 1 cut(s) 190
BfuI GTATCC 1 cut(s) 498
BisI GCNGC 8 cut(s) 44, 47, 197, 351, 512, 697, 909, 1041
BlsI GCNGC 8 cut(s) 45, 48, 198, 352, 513, 698, 910, 1042
Bme1390I CCNGG 5 cut(s) 101, 167, 261, 734, 859
Bme18I GGWCC 1 cut(s) 814
BmeT110I CYCGRG 2 cut(s) 1094, 1157
BmgT120I GGNCC 3 cut(s) 135, 164, 814
BmiI GGNNCC 2 cut(s) 816, 950
BmrFI CCNGG 5 cut(s) 101, 167, 261, 734, 859
BmsI GCATC 5 cut(s) 223, 374, 407, 453, 675
BpmI CTGGAG 1 cut(s) 897
Bpu10I CCTNAGC 1 cut(s) 238
BpuMI CCSGG 2 cut(s) 167, 261
BsaHI GRCGYC 1 cut(s) 5
BsaJI CCNNGG 4 cut(s) 108, 131, 621, 732
Bsc4I CCNNNNNNNGG 2 cut(s) 31, 958
Bse118I RCCGGY 1 cut(s) 10
Bse1I ACTGG 1 cut(s) 411
Bse3DI GCAATG 2 cut(s) 67, 413
BseBI CCWGG 3 cut(s) 101, 734, 859
BseDI CCNNGG 4 cut(s) 108, 131, 621, 732
BseGI GGATG 5 cut(s) 17, 238, 398, 438, 816
BseLI CCNNNNNNNGG 2 cut(s) 31, 958
BseMI GCAATG 2 cut(s) 67, 413
BseNI ACTGG 1 cut(s) 411
BsePI GCGCGC 1 cut(s) 1117
BseXI GCAGC 7 cut(s) 30, 33, 208, 362, 523, 895, 1052
Bsh1236I CGCG 2 cut(s) 133, 1119
BshFI GGCC 4 cut(s) 107, 137, 165, 839
BsiHKAI GWGCWC 3 cut(s) 117, 786, 1101
BsiHKCI CYCGRG 2 cut(s) 1094, 1157
BsiSI CCGG 4 cut(s) 11, 57, 167, 261
BslFI GGGAC 1 cut(s) 570
BslI CCNNNNNNNGG 2 cut(s) 31, 958
BsmAI GTCTC 1 cut(s) 496
BsmBI CGTCTC 1 cut(s) 496
BsmFI GGGAC 1 cut(s) 570
BsmI GAATGC 1 cut(s) 455
BsnI GGCC 4 cut(s) 107, 137, 165, 839
BsoBI CYCGRG 2 cut(s) 1094, 1157
Bsp1286I GDGCHC 3 cut(s) 117, 786, 1101
Bsp1407I TGTACA 1 cut(s) 843
Bsp143I GATC 4 cut(s) 421, 564, 625, 736
BspACI CCGC 6 cut(s) 79, 131, 133, 242, 280, 697
BspANI GGCC 4 cut(s) 107, 137, 165, 839
BspFNI CGCG 2 cut(s) 133, 1119
BspHI TCATGA 1 cut(s) 1063
BspLI GGNNCC 2 cut(s) 816, 950
BspMAI CTGCAG 1 cut(s) 564
BspMI ACCTGC 1 cut(s) 190
BspPI GGATC 2 cut(s) 633, 744
BspQI GCTCTTC 1 cut(s) 270
BsrBI CCGCTC 1 cut(s) 280
BsrDI GCAATG 2 cut(s) 67, 413
BsrFI RCCGGY 1 cut(s) 10
BsrGI TGTACA 1 cut(s) 843
BsrI ACTGG 1 cut(s) 411
BssAI RCCGGY 1 cut(s) 10
BssECI CCNNGG 4 cut(s) 108, 131, 621, 732
BssHII GCGCGC 1 cut(s) 1117
BssMI GATC 4 cut(s) 421, 564, 625, 736
BssNI GRCGYC 1 cut(s) 5
BssSI CACGAG 1 cut(s) 73
BssT1I CCWWGG 1 cut(s) 621
Bst2BI CACGAG 1 cut(s) 73
Bst2UI CCWGG 3 cut(s) 101, 734, 859
Bst4CI ACNGT 3 cut(s) 149, 871, 982
Bst6I CTCTTC 1 cut(s) 270
BstACI GRCGYC 1 cut(s) 5
BstAPI GCANNNNNTGC 1 cut(s) 43
BstAUI TGTACA 1 cut(s) 843
BstC8I GCNNGC 4 cut(s) 135, 1038, 1119, 1164
BstDEI CTNAG 3 cut(s) 238, 571, 1179
BstDSI CCRYGG 1 cut(s) 131
BstF5I GGATG 5 cut(s) 17, 238, 398, 438, 816
BstFNI CGCG 2 cut(s) 133, 1119
BstHHI GCGC 5 cut(s) 37, 585, 1119, 1121, 1168
BstKTI GATC 4 cut(s) 424, 567, 628, 739
BstMAI GTCTC 1 cut(s) 496
BstMBI GATC 4 cut(s) 421, 564, 625, 736
BstMWI GCNNNNNNNGC 6 cut(s) 43, 338, 347, 395, 685, 1090
BstNI CCWGG 3 cut(s) 101, 734, 859
BstNSI RCATGY 1 cut(s) 1166
BstSCI CCNGG 5 cut(s) 99, 165, 259, 732, 857
BstSFI CTRYAG 1 cut(s) 560
BstUI CGCG 2 cut(s) 133, 1119
BstV1I GCAGC 7 cut(s) 30, 33, 208, 362, 523, 895, 1052
BsuI GTATCC 1 cut(s) 498
BsuRI GGCC 4 cut(s) 107, 137, 165, 839
BtgI CCRYGG 1 cut(s) 131
BtgZI GCGATG 1 cut(s) 649
BtsCI GGATG 5 cut(s) 17, 238, 398, 438, 816
BtsIMutI CAGTG 1 cut(s) 404
BveI ACCTGC 1 cut(s) 190
Cac8I GCNNGC 4 cut(s) 135, 1038, 1119, 1164
CaiI CAGNNNCTG 1 cut(s) 43
CciI TCATGA 1 cut(s) 1063
CfoI GCGC 5 cut(s) 37, 585, 1119, 1121, 1168
Cfr10I RCCGGY 1 cut(s) 10
Cfr13I GGNCC 3 cut(s) 135, 164, 814
Cfr42I CCGCGG 1 cut(s) 134
CsiI ACCWGGT 1 cut(s) 857
Csp6I GTAC 1 cut(s) 844
CviAII CATG 6 cut(s) 143, 337, 544, 1045, 1064, 1163
CviQI GTAC 1 cut(s) 844
DdeI CTNAG 3 cut(s) 238, 571, 1179
DpnI GATC 4 cut(s) 423, 566, 627, 738
DpnII GATC 4 cut(s) 421, 564, 625, 736
Eam1104I CTCTTC 1 cut(s) 270
EarI CTCTTC 1 cut(s) 270
Ecl136II GAGCTC 1 cut(s) 1099
Eco130I CCWWGG 1 cut(s) 621
Eco24I GRGCYC 1 cut(s) 1101
Eco47I GGWCC 1 cut(s) 814
Eco53kI GAGCTC 1 cut(s) 1099
Eco88I CYCGRG 2 cut(s) 1094, 1157
EcoICRI GAGCTC 1 cut(s) 1099
EcoRI GAATTC 1 cut(s) 886
EcoRII CCWGG 3 cut(s) 99, 732, 857
EcoT14I CCWWGG 1 cut(s) 621
EcoT38I GRGCYC 1 cut(s) 1101
ErhI CCWWGG 1 cut(s) 621
Esp3I CGTCTC 1 cut(s) 496
FaeI CATG 6 cut(s) 146, 340, 547, 1048, 1067, 1166
FaqI GGGAC 1 cut(s) 570
FatI CATG 6 cut(s) 142, 336, 543, 1044, 1063, 1162
FauI CCCGC 2 cut(s) 126, 273
FblI GTMKAC 1 cut(s) 66
Fnu4HI GCNGC 8 cut(s) 44, 47, 197, 351, 512, 697, 909, 1041
FokI GGATG 5 cut(s) 4, 245, 385, 425, 823
FriOI GRGCYC 1 cut(s) 1101
Fsp4HI GCNGC 8 cut(s) 44, 47, 197, 351, 512, 697, 909, 1041
FspAI RTGCGCAY 1 cut(s) 584
FspBI CTAG 2 cut(s) 893, 1133
FspI TGCGCA 2 cut(s) 584, 1167
GlaI GCGC 5 cut(s) 36, 584, 1118, 1120, 1167
GluI GCNGC 8 cut(s) 44, 47, 197, 351, 512, 697, 909, 1041
GsuI CTGGAG 1 cut(s) 897
HaeIII GGCC 4 cut(s) 107, 137, 165, 839
HapII CCGG 4 cut(s) 11, 57, 167, 261
HhaI GCGC 5 cut(s) 37, 585, 1119, 1121, 1168
Hin1I GRCGYC 1 cut(s) 5
Hin1II CATG 6 cut(s) 146, 340, 547, 1048, 1067, 1166
Hin6I GCGC 5 cut(s) 35, 583, 1117, 1119, 1166
HinP1I GCGC 5 cut(s) 35, 583, 1117, 1119, 1166
HincII GTYRAC 2 cut(s) 67, 1024
HindII GTYRAC 2 cut(s) 67, 1024
HinfI GANTC 4 cut(s) 53, 410, 522, 575
HpaII CCGG 4 cut(s) 11, 57, 167, 261
HphI GGTGA 3 cut(s) 25, 682, 748
Hpy166II GTNNAC 5 cut(s) 67, 361, 450, 846, 1024
Hpy188I TCNGA 4 cut(s) 22, 112, 317, 598
Hpy188III TCNNGA 6 cut(s) 91, 460, 629, 914, 1064, 1133
Hpy8I GTNNAC 5 cut(s) 67, 361, 450, 846, 1024
Hpy99I CGWCG 3 cut(s) 10, 32, 71
HpyAV CCTTC 2 cut(s) 148, 209
HpyCH4III ACNGT 3 cut(s) 149, 871, 982
HpyCH4IV ACGT 1 cut(s) 505
HpyCH4V TGCA 9 cut(s) 332, 350, 398, 455, 466, 511, 562, 989, 1084
HpyF10VI GCNNNNNNNGC 6 cut(s) 43, 338, 347, 395, 685, 1090
HpyF3I CTNAG 3 cut(s) 238, 571, 1179
HpySE526I ACGT 1 cut(s) 505
Hsp92I GRCGYC 1 cut(s) 5
Hsp92II CATG 6 cut(s) 146, 340, 547, 1048, 1067, 1166
HspAI GCGC 5 cut(s) 35, 583, 1117, 1119, 1166
KspI CCGCGG 1 cut(s) 134
Kzo9I GATC 4 cut(s) 421, 564, 625, 736
LguI GCTCTTC 1 cut(s) 270
LmnI GCTCC 5 cut(s) 112, 789, 824, 916, 1104
Lsp1109I GCAGC 7 cut(s) 30, 33, 208, 362, 523, 895, 1052
LweI GCATC 5 cut(s) 223, 374, 407, 453, 675
MabI ACCWGGT 1 cut(s) 857
MaeI CTAG 2 cut(s) 893, 1133
MaeII ACGT 1 cut(s) 505
MaeIII GTNAC 4 cut(s) 13, 661, 1148, 1170
MalI GATC 4 cut(s) 423, 566, 627, 738
MbiI CCGCTC 1 cut(s) 280
MboI GATC 4 cut(s) 421, 564, 625, 736
MboII GAAGA 2 cut(s) 287, 614
MhlI GDGCHC 3 cut(s) 117, 786, 1101
MluCI AATT 5 cut(s) 286, 674, 793, 828, 886
MlyI GAGTC 2 cut(s) 404, 584
MmeI TCCRAC 4 cut(s) 45, 732, 802, 877
MnlI CCTC 6 cut(s) 25, 118, 163, 240, 1012, 1051
MroXI GAANNNNTTC 1 cut(s) 379
MseI TTAA 3 cut(s) 159, 222, 617
MslI CAYNNNNRTG 2 cut(s) 668, 940
MspA1I CMGCKG 2 cut(s) 133, 908
MspI CCGG 4 cut(s) 11, 57, 167, 261
MspR9I CCNGG 5 cut(s) 101, 167, 261, 734, 859
Mva1269I GAATGC 1 cut(s) 455
MvaI CCWGG 3 cut(s) 101, 734, 859
MvnI CGCG 2 cut(s) 133, 1119
MwoI GCNNNNNNNGC 6 cut(s) 43, 338, 347, 395, 685, 1090
NciI CCSGG 2 cut(s) 167, 261
NdeII GATC 4 cut(s) 421, 564, 625, 736
NlaIII CATG 6 cut(s) 146, 340, 547, 1048, 1067, 1166
NlaIV GGNNCC 2 cut(s) 816, 950
NmuCI GTSAC 4 cut(s) 13, 661, 1148, 1170
NsbI TGCGCA 2 cut(s) 584, 1167
NspI RCATGY 1 cut(s) 1166
OliI CACNNNNGTG 1 cut(s) 668
PaeI GCATGC 1 cut(s) 1166
PaeR7I CTCGAG 1 cut(s) 1094
PagI TCATGA 1 cut(s) 1063
PaqCI CACCTGC 1 cut(s) 190
PauI GCGCGC 1 cut(s) 1117
PciSI GCTCTTC 1 cut(s) 270
PctI GAATGC 1 cut(s) 455
PdmI GAANNNNTTC 1 cut(s) 379
PfeI GAWTC 2 cut(s) 53, 522
PflFI GACNNNGTC 2 cut(s) 980, 1028
PfoI TCCNGGA 1 cut(s) 259
PkrI GCNGC 8 cut(s) 45, 48, 198, 352, 513, 698, 910, 1042
PleI GAGTC 2 cut(s) 404, 583
PpsI GAGTC 2 cut(s) 404, 583
Psp124BI GAGCTC 1 cut(s) 1101
Psp6I CCWGG 3 cut(s) 99, 732, 857
PspGI CCWGG 3 cut(s) 99, 732, 857
PspN4I GGNNCC 2 cut(s) 816, 950
PspPI GGNCC 3 cut(s) 135, 164, 814
PspXI VCTCGAGB 1 cut(s) 1094
PstI CTGCAG 1 cut(s) 564
PstNI CAGNNNCTG 1 cut(s) 43
PsyI GACNNNGTC 2 cut(s) 980, 1028
PteI GCGCGC 1 cut(s) 1117
PvuII CAGCTG 1 cut(s) 908
RsaI GTAC 1 cut(s) 845
RsaNI GTAC 1 cut(s) 844
RseI CAYNNNNRTG 2 cut(s) 668, 940
SacI GAGCTC 1 cut(s) 1101
SacII CCGCGG 1 cut(s) 134
SalI GTCGAC 1 cut(s) 65
SapI GCTCTTC 1 cut(s) 270
SaqAI TTAA 3 cut(s) 159, 222, 617
SatI GCNGC 8 cut(s) 44, 47, 197, 351, 512, 697, 909, 1041
Sau3AI GATC 4 cut(s) 421, 564, 625, 736
Sau96I GGNCC 3 cut(s) 135, 164, 814
SchI GAGTC 2 cut(s) 404, 584
ScrFI CCNGG 5 cut(s) 101, 167, 261, 734, 859
SduI GDGCHC 3 cut(s) 117, 786, 1101
SexAI ACCWGGT 1 cut(s) 857
SfaNI GCATC 5 cut(s) 223, 374, 407, 453, 675
SfcI CTRYAG 1 cut(s) 560
Sfr274I CTCGAG 1 cut(s) 1094
Sfr303I CCGCGG 1 cut(s) 134
SgrAI CRCCGGYG 1 cut(s) 10
SgrBI CCGCGG 1 cut(s) 134
SinI GGWCC 1 cut(s) 814
SlaI CTCGAG 1 cut(s) 1094
SmiMI CAYNNNNRTG 2 cut(s) 668, 940
SmlI CTYRAG 1 cut(s) 1094
SmoI CTYRAG 1 cut(s) 1094
SphI GCATGC 1 cut(s) 1166
Sse9I AATT 5 cut(s) 286, 674, 793, 828, 886
SsiI CCGC 6 cut(s) 79, 131, 133, 242, 280, 697
SspMI CTAG 2 cut(s) 893, 1133
SstI GAGCTC 1 cut(s) 1101
StyD4I CCNGG 5 cut(s) 99, 165, 259, 732, 857
StyI CCWWGG 1 cut(s) 621
TaaI ACNGT 3 cut(s) 149, 871, 982
TaiI ACGT 1 cut(s) 508
TaqI TCGA 8 cut(s) 66, 90, 213, 461, 975, 1017, 1095, 1113
TasI AATT 5 cut(s) 286, 674, 793, 828, 886
TatI WGTACW 1 cut(s) 843
TauI GCSGC 1 cut(s) 699
TfiI GAWTC 2 cut(s) 53, 522
Tru1I TTAA 3 cut(s) 159, 222, 617
Tru9I TTAA 3 cut(s) 159, 222, 617
TscAI CASTG 1 cut(s) 411
TseFI GTSAC 4 cut(s) 13, 661, 1148, 1170
TseI GCWGC 7 cut(s) 43, 46, 196, 350, 511, 908, 1040
Tsp45I GTSAC 4 cut(s) 13, 661, 1148, 1170
TspDTI ATGAA 5 cut(s) 240, 372, 427, 615, 819
TspGWI ACGGA 1 cut(s) 974
TspRI CASTG 1 cut(s) 411
Tth111I GACNNNGTC 2 cut(s) 980, 1028
VpaK11BI GGWCC 1 cut(s) 814
XapI RAATTY 1 cut(s) 886
XbaI TCTAGA 1 cut(s) 1132
XceI RCATGY 1 cut(s) 1166
XcmI CCANNNNNNNNNTGG 1 cut(s) 149
XhoI CTCGAG 1 cut(s) 1094
XmiI GTMKAC 1 cut(s) 66
XmnI GAANNNNTTC 1 cut(s) 379
XspI CTAG 2 cut(s) 893, 1133
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.