Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0001629

Physical Location & Seq

Genomic Coordinates Forward (+)

44179061 .. 44180820

Gene Structure 1760 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0322500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 768 bp

ATGGCAGAAGAGCAAAACCACCACCTTCCTCCAGAGTCACCACAAGAGCAAAACCTCCACCCTCCTCCAGAGTCACCACCACCACCACAACAAAAACCACAAAACAACCACTACCAGAACCACTTTCCACCACCCGAAATGATTCCGGACCGAAATATAAAAGAATGTAACATGCATCACCAAACCAGTGAACCCTACAGAGCTCTCTGCACCTGCCTCACCATCCTCCTCCTCATCCTCGGCGCCACCACCCTTGCGCTCTGGCTCGTTTACCGCCCCCACAAGCCGCAGTTCACTGTCGCCGCGGTCGCCATCTACTCCCTCAACGCCACCTCCCCTCCCTCCCAAATCTCCACCACCATGCAGTTCACCATCGTCACCTGCAACCCCAACCGGAGGGTCTCCATCCGCTACGACCGTCTCCAGGCCTTTGTGGCCTATCGCAACCAAGCCATTACCCAGCAGGTGATGCTCCCCCCGCTGGCGCACGGGCGCCATAGTAGCGTGGCTGTGTCGCCCGTGCTTGGGGGAGTGGCGGTGCCGGTGTCGGGGGAGGTGTTGAACGGGCTAGCGATTGACGAGGCGTACGGGGTGGTGAAACTGAGGGTGGTGGTGGTGGGGAGGCTGAGGTGGAAGGTGATGGGGTTGGGGATAAGGACCGGGCATTATAGGATCTATGTCAAGTGTGATGTGCTGGTTGGGTTGAAGAAAGGGTTCGTGGGTCAAGTTCCATTGCTGGGTTCTCCTAATTGTAAAGTTGATATATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000041 GO:0000139 GO:0003674 GO:0005215 GO:0005384 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005770 GO:0005794 GO:0006810 GO:0006811 GO:0006812 GO:0006828 GO:0006873 GO:0006875 GO:0008150 GO:0008324 GO:0009987 GO:0010008 GO:0010035 GO:0010038 GO:0010042 GO:0010486 GO:0012505 GO:0015075 GO:0015077 GO:0015078 GO:0015291 GO:0015297 GO:0015298 GO:0015299 GO:0015318 GO:0015491 GO:0015672 GO:0016020 GO:0019725 GO:0022804 GO:0022857 GO:0022890 GO:0030001 GO:0030003 GO:0030026 GO:0031090 GO:0031410 GO:0031902 GO:0031982 GO:0031984 GO:0034220 GO:0042221 GO:0042592 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044431 GO:0044433 GO:0044440 GO:0044444 GO:0044446 GO:0044464 GO:0046688 GO:0046873 GO:0046915 GO:0046916 GO:0048878 GO:0050801 GO:0050896 GO:0051139 GO:0051179 GO:0051234 GO:0055065 GO:0055071 GO:0055076 GO:0055080 GO:0055082 GO:0055085 GO:0065007 GO:0065008 GO:0071421 GO:0097708 GO:0098588 GO:0098655 GO:0098660 GO:0098662 GO:0098771 GO:0098791 GO:0098805 GO:0099516 GO:1902600

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cation_efflux ZT_dimer

Protein Analysis

255

Amino Acids

28.29

Weight (kDa)

9.3

Isoelectric Point (pI)

59.18

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LEA_2	PF03168	129 - 229	6.8e-07	Late embryogenesis abundant protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001629)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G39450
fragaria_vesca	FvH4_3g14571 FvH4_3g14571 FvH4_7g21220 FvH4_7g21220
malus_domestica	MD01G1120600.v1.1 MD05G1235000.v1.1 MD07G1190000.v1.1
prunus_persica	Prupe.2G227500_v2.0.a1 Prupe.2G227500_v2.0.a1 Prupe.2G227500_v2.0.a1 Prupe.2G227500_v2.0.a1 Prupe.2G227500_v2.0.a1 Prupe.4G131200_v2.0.a1
pyrus_communis	pycom01g14720 pycom05g21190 pycom07g17960
rosa_chinensis	RchiOBHm_Chr1g0365671 RchiOBHm_Chr5g0024031 RchiOBHm_Chr5g0024041
rosa_laevigata	RLG00000032756
rosa_multiflora	Rmu_co8495291.1_g000001 Rmu_sc0002093.1_g000006 Rmu_sc0011761.1_g000003 Rmu_sc0011761.1_g000004 Rmu_sc0023483.1_g000001
rosa_roxburghii	Rroxscaffold_1G00055200 Rroxscaffold_1G00055210 Rroxscaffold_4G00291100
rosa_rugosa	Rorug01G0322400 Rorug01G0322500 Rorug05G0081100 Rorug05G0081100 Rorug05G0081200
rosa_samantha	Rh1AG331200 Rh1BG292600 Rh1CG309200 Rh1DG324200 Rh5AG171400 Rh5AG171500 Rh5BG168100 Rh5BG168200 Rh5CG183600 Rh5CG183700 Rh5DG170200 Rh5DG170300
rosa_wichuraiana	Rw1G029420 Rw5G015510 Rw5G015520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	3 cut(s)	221, 389, 454
Acc36I	ACCTGC	3 cut(s)	221, 389, 454
AccB1I	GGYRCC	3 cut(s)	242, 492, 538
AccII	CGCG	1 cut(s)	305
AccIII	TCCGGA	1 cut(s)	145
AciI	CCGC	7 cut(s)	274, 287, 303, 305, 409, 479, 536
AclWI	GGATC	1 cut(s)	680
AcyI	GRCGYC	2 cut(s)	243, 493
AfaI	GTAC	1 cut(s)	587
AfiI	CCNNNNNNNGG	7 cut(s)	396, 424, 481, 524, 525, 548, 737
AgsI	TTSAA	2 cut(s)	562, 706
AjnI	CCWGG	1 cut(s)	423
AluBI	AGCT	1 cut(s)	203
AluI	AGCT	1 cut(s)	203
Alw21I	GWGCWC	1 cut(s)	205
Alw26I	GTCTC	2 cut(s)	406, 425
AlwI	GGATC	1 cut(s)	680
Aor13HI	TCCGGA	1 cut(s)	145
AoxI	GGCC	2 cut(s)	426, 435
Asp700I	GAANNNNTTC	2 cut(s)	141, 713
AspLEI	GCGC	4 cut(s)	245, 259, 487, 495
AspS9I	GGNCC	2 cut(s)	148, 657
AsuC2I	CCSGG	1 cut(s)	661
AsuHPI	GGTGA	9 cut(s)	30, 66, 170, 211, 361, 370, 478, 607, 649
AsuNHI	GCTAGC	1 cut(s)	568
AvaII	GGWCC	2 cut(s)	148, 657
BanI	GGYRCC	3 cut(s)	242, 492, 538
BanII	GRGCYC	1 cut(s)	205
Bbv12I	GWGCWC	1 cut(s)	205
BbvCI	CCTCAGC	1 cut(s)	626
BccI	CCATC	5 cut(s)	230, 320, 380, 413, 634
BciT130I	CCWGG	1 cut(s)	425
BcnI	CCSGG	1 cut(s)	661
BcoDI	GTCTC	2 cut(s)	406, 425
BfaI	CTAG	1 cut(s)	569
BfmI	CTRYAG	1 cut(s)	196
BfoI	RGCGCY	2 cut(s)	246, 496
BfuAI	ACCTGC	3 cut(s)	221, 389, 454
BglI	GCCNNNNNGGC	1 cut(s)	434
BisI	GCNGC	2 cut(s)	287, 303
BlsI	GCNGC	2 cut(s)	288, 304
Bme1390I	CCNGG	2 cut(s)	425, 661
Bme18I	GGWCC	2 cut(s)	148, 657
BmgT120I	GGNCC	2 cut(s)	148, 657
BmiI	GGNNCC	3 cut(s)	244, 494, 540
BmrFI	CCNGG	2 cut(s)	425, 661
BmsI	GCATC	2 cut(s)	184, 459
BmtI	GCTAGC	1 cut(s)	572
BpmI	CTGGAG	3 cut(s)	15, 51, 407
Bpu10I	CCTNAGC	1 cut(s)	626
BpuMI	CCSGG	1 cut(s)	661
BsaHI	GRCGYC	2 cut(s)	243, 493
BsaI	GGTCTC	1 cut(s)	406
BsaJI	CCNNGG	2 cut(s)	238, 303
BsaWI	WCCGGW	2 cut(s)	145, 393
BsaXI	ACNNNNNCTCC	6 cut(s)	317, 322, 347, 352, 522, 552
Bsc4I	CCNNNNNNNGG	7 cut(s)	396, 424, 481, 524, 525, 548, 737
Bse118I	RCCGGY	1 cut(s)	541
Bse1I	ACTGG	1 cut(s)	186
Bse3DI	GCAATG	1 cut(s)	731
BseAI	TCCGGA	1 cut(s)	145
BseBI	CCWGG	1 cut(s)	425
BseDI	CCNNGG	2 cut(s)	238, 303
BseGI	GGATG	3 cut(s)	222, 234, 405
BseLI	CCNNNNNNNGG	7 cut(s)	396, 424, 481, 524, 525, 548, 737
BseMI	GCAATG	1 cut(s)	731
BseMII	CTCAG	2 cut(s)	593, 617
BseNI	ACTGG	1 cut(s)	186
BseRI	GAGGAG	3 cut(s)	54, 218, 221
BseYI	CCCAGC	2 cut(s)	459, 736
BsgI	GTGCAG	1 cut(s)	193
Bsh1236I	CGCG	1 cut(s)	305
Bsh1285I	CGRYCG	2 cut(s)	309, 418
BshFI	GGCC	2 cut(s)	428, 437
BshNI	GGYRCC	3 cut(s)	242, 492, 538
BsiEI	CGRYCG	2 cut(s)	309, 418
BsiHKAI	GWGCWC	1 cut(s)	205
BsiSI	CCGG	4 cut(s)	146, 394, 542, 660
BsiWI	CGTACG	1 cut(s)	585
BslI	CCNNNNNNNGG	7 cut(s)	396, 424, 481, 524, 525, 548, 737
BsmAI	GTCTC	2 cut(s)	406, 425
BsmBI	CGTCTC	1 cut(s)	425
BsnI	GGCC	2 cut(s)	428, 437
Bso31I	GGTCTC	1 cut(s)	406
Bsp1286I	GDGCHC	1 cut(s)	205
Bsp13I	TCCGGA	1 cut(s)	145
Bsp143I	GATC	1 cut(s)	672
BspACI	CCGC	7 cut(s)	274, 287, 303, 305, 409, 479, 536
BspANI	GGCC	2 cut(s)	428, 437
BspCNI	CTCAG	2 cut(s)	594, 618
BspEI	TCCGGA	1 cut(s)	145
BspFNI	CGCG	1 cut(s)	305
BspLI	GGNNCC	3 cut(s)	244, 494, 540
BspMI	ACCTGC	3 cut(s)	221, 389, 454
BspOI	GCTAGC	1 cut(s)	572
BspPI	GGATC	1 cut(s)	680
BspQI	GCTCTTC	1 cut(s)	3
BspT107I	GGYRCC	3 cut(s)	242, 492, 538
BspTNI	GGTCTC	1 cut(s)	406
BsrDI	GCAATG	1 cut(s)	731
BsrFI	RCCGGY	1 cut(s)	541
BsrI	ACTGG	1 cut(s)	186
BssAI	RCCGGY	1 cut(s)	541
BssECI	CCNNGG	2 cut(s)	238, 303
BssMI	GATC	1 cut(s)	672
BssNI	GRCGYC	2 cut(s)	243, 493
Bst2UI	CCWGG	1 cut(s)	425
Bst4CI	ACNGT	2 cut(s)	298, 419
Bst6I	CTCTTC	1 cut(s)	3
BstACI	GRCGYC	2 cut(s)	243, 493
BstAPI	GCANNNNNTGC	1 cut(s)	469
BstC8I	GCNNGC	2 cut(s)	483, 570
BstDEI	CTNAG	2 cut(s)	602, 626
BstDSI	CCRYGG	1 cut(s)	303
BstF5I	GGATG	3 cut(s)	222, 234, 405
BstFNI	CGCG	1 cut(s)	305
BstH2I	RGCGCY	2 cut(s)	246, 496
BstHHI	GCGC	4 cut(s)	245, 259, 487, 495
BstKTI	GATC	1 cut(s)	675
BstMAI	GTCTC	2 cut(s)	406, 425
BstMBI	GATC	1 cut(s)	672
BstMCI	CGRYCG	2 cut(s)	309, 418
BstMWI	GCNNNNNNNGC	5 cut(s)	308, 434, 469, 478, 501
BstNI	CCWGG	1 cut(s)	425
BstNSI	RCATGY	1 cut(s)	175
BstSCI	CCNGG	2 cut(s)	423, 659
BstSFI	CTRYAG	1 cut(s)	196
BstUI	CGCG	1 cut(s)	305
BstX2I	RGATCY	1 cut(s)	672
BstYI	RGATCY	1 cut(s)	672
BsuRI	GGCC	2 cut(s)	428, 437
BtgI	CCRYGG	1 cut(s)	303
BtsCI	GGATG	3 cut(s)	222, 234, 405
BtsIMutI	CAGTG	2 cut(s)	193, 294
BveI	ACCTGC	3 cut(s)	221, 389, 454
Cac8I	GCNNGC	2 cut(s)	483, 570
CfoI	GCGC	4 cut(s)	245, 259, 487, 495
Cfr10I	RCCGGY	1 cut(s)	541
Cfr13I	GGNCC	2 cut(s)	148, 657
Cfr42I	CCGCGG	1 cut(s)	306
CpoI	CGGWCCG	1 cut(s)	148
Csp6I	GTAC	1 cut(s)	586
CspCI	CAANNNNNGTGG	2 cut(s)	235, 270
CspI	CGGWCCG	1 cut(s)	148
CviAII	CATG	2 cut(s)	172, 361
CviJI	RGCY	9 cut(s)	203, 265, 286, 428, 437, 452, 509, 568, 625
CviKI_1	RGCY	9 cut(s)	203, 265, 286, 428, 437, 452, 509, 568, 625
CviQI	GTAC	1 cut(s)	586
DdeI	CTNAG	2 cut(s)	602, 626
DinI	GGCGCC	2 cut(s)	244, 494
DpnI	GATC	1 cut(s)	674
DpnII	GATC	1 cut(s)	672
Eam1104I	CTCTTC	1 cut(s)	3
EarI	CTCTTC	1 cut(s)	3
Ecl136II	GAGCTC	1 cut(s)	203
Eco147I	AGGCCT	1 cut(s)	428
Eco24I	GRGCYC	1 cut(s)	205
Eco31I	GGTCTC	1 cut(s)	406
Eco47I	GGWCC	2 cut(s)	148, 657
Eco53kI	GAGCTC	1 cut(s)	203
EcoICRI	GAGCTC	1 cut(s)	203
EcoRII	CCWGG	1 cut(s)	423
EcoT22I	ATGCAT	1 cut(s)	177
EcoT38I	GRGCYC	1 cut(s)	205
EgeI	GGCGCC	2 cut(s)	244, 494
EheI	GGCGCC	2 cut(s)	244, 494
Esp3I	CGTCTC	1 cut(s)	425
FaeI	CATG	2 cut(s)	175, 364
FaiI	YATR	8 cut(s)	158, 173, 362, 498, 669, 678, 764, 766
FatI	CATG	2 cut(s)	171, 360
FauI	CCCGC	1 cut(s)	486
Fnu4HI	GCNGC	2 cut(s)	287, 303
FokI	GGATG	3 cut(s)	209, 221, 392
FriOI	GRGCYC	1 cut(s)	205
Fsp4HI	GCNGC	2 cut(s)	287, 303
FspBI	CTAG	1 cut(s)	569
GlaI	GCGC	4 cut(s)	244, 258, 486, 494
GluI	GCNGC	2 cut(s)	287, 303
GsaI	CCCAGC	2 cut(s)	463, 740
GsuI	CTGGAG	3 cut(s)	15, 51, 407
HaeII	RGCGCY	2 cut(s)	246, 496
HaeIII	GGCC	2 cut(s)	428, 437
HapII	CCGG	4 cut(s)	146, 394, 542, 660
HhaI	GCGC	4 cut(s)	245, 259, 487, 495
Hin1I	GRCGYC	2 cut(s)	243, 493
Hin1II	CATG	2 cut(s)	175, 364
Hin6I	GCGC	4 cut(s)	243, 257, 485, 493
HinP1I	GCGC	4 cut(s)	243, 257, 485, 493
HinfI	GANTC	3 cut(s)	35, 71, 142
HpaII	CCGG	4 cut(s)	146, 394, 542, 660
HphI	GGTGA	9 cut(s)	30, 66, 170, 211, 361, 370, 478, 607, 649
Hpy166II	GTNNAC	4 cut(s)	191, 271, 294, 369
Hpy188III	TCNNGA	3 cut(s)	32, 68, 146
Hpy8I	GTNNAC	4 cut(s)	191, 271, 294, 369
HpyAV	CCTTC	2 cut(s)	35, 628
HpyCH4III	ACNGT	2 cut(s)	298, 419
HpyCH4V	TGCA	4 cut(s)	175, 210, 364, 384
HpyF10VI	GCNNNNNNNGC	5 cut(s)	308, 434, 469, 478, 501
HpyF3I	CTNAG	2 cut(s)	602, 626
Hsp92I	GRCGYC	2 cut(s)	243, 493
Hsp92II	CATG	2 cut(s)	175, 364
HspAI	GCGC	4 cut(s)	243, 257, 485, 493
KasI	GGCGCC	2 cut(s)	242, 492
Kpn2I	TCCGGA	1 cut(s)	145
KspI	CCGCGG	1 cut(s)	306
Kzo9I	GATC	1 cut(s)	672
LguI	GCTCTTC	1 cut(s)	3
LmnI	GCTCC	1 cut(s)	477
LweI	GCATC	2 cut(s)	184, 459
MaeI	CTAG	1 cut(s)	569
MaeIII	GTNAC	4 cut(s)	36, 72, 167, 376
MalI	GATC	1 cut(s)	674
MboI	GATC	1 cut(s)	672
MboII	GAAGA	2 cut(s)	20, 718
MflI	RGATCY	1 cut(s)	672
MhlI	GDGCHC	1 cut(s)	205
MluCI	AATT	1 cut(s)	748
Mly113I	GGCGCC	2 cut(s)	243, 493
MlyI	GAGTC	2 cut(s)	44, 80
Mph1103I	ATGCAT	1 cut(s)	177
MroI	TCCGGA	1 cut(s)	145
MroXI	GAANNNNTTC	2 cut(s)	141, 713
MslI	CAYNNNNRTG	1 cut(s)	359
MspA1I	CMGCKG	2 cut(s)	305, 481
MspI	CCGG	4 cut(s)	146, 394, 542, 660
MspR9I	CCNGG	2 cut(s)	425, 661
MvaI	CCWGG	1 cut(s)	425
MvnI	CGCG	1 cut(s)	305
MwoI	GCNNNNNNNGC	5 cut(s)	308, 434, 469, 478, 501
NarI	GGCGCC	2 cut(s)	243, 493
NciI	CCSGG	1 cut(s)	661
NdeII	GATC	1 cut(s)	672
NheI	GCTAGC	1 cut(s)	568
NlaIII	CATG	2 cut(s)	175, 364
NlaIV	GGNNCC	3 cut(s)	244, 494, 540
NmeAIII	GCCGAG	1 cut(s)	219
NmuCI	GTSAC	3 cut(s)	36, 72, 376
NsiI	ATGCAT	1 cut(s)	177
NspI	RCATGY	1 cut(s)	175
PaqCI	CACCTGC	3 cut(s)	221, 389, 454
PceI	AGGCCT	1 cut(s)	428
PciSI	GCTCTTC	1 cut(s)	3
PdmI	GAANNNNTTC	2 cut(s)	141, 713
PfeI	GAWTC	1 cut(s)	142
Pfl23II	CGTACG	1 cut(s)	585
PkrI	GCNGC	2 cut(s)	288, 304
PleI	GAGTC	2 cut(s)	43, 79
PluTI	GGCGCC	2 cut(s)	246, 496
PpsI	GAGTC	2 cut(s)	43, 79
Psp124BI	GAGCTC	1 cut(s)	205
Psp6I	CCWGG	1 cut(s)	423
PspFI	CCCAGC	2 cut(s)	459, 736
PspGI	CCWGG	1 cut(s)	423
PspLI	CGTACG	1 cut(s)	585
PspN4I	GGNNCC	3 cut(s)	244, 494, 540
PspPI	GGNCC	2 cut(s)	148, 657
PsuI	RGATCY	1 cut(s)	672
RsaI	GTAC	1 cut(s)	587
RsaNI	GTAC	1 cut(s)	586
RseI	CAYNNNNRTG	1 cut(s)	359
Rsr2I	CGGWCCG	1 cut(s)	148
RsrII	CGGWCCG	1 cut(s)	148
SacI	GAGCTC	1 cut(s)	205
SacII	CCGCGG	1 cut(s)	306
SapI	GCTCTTC	1 cut(s)	3
SatI	GCNGC	2 cut(s)	287, 303
Sau3AI	GATC	1 cut(s)	672
Sau96I	GGNCC	2 cut(s)	148, 657
SchI	GAGTC	2 cut(s)	44, 80
ScrFI	CCNGG	2 cut(s)	425, 661
SduI	GDGCHC	1 cut(s)	205
SfaNI	GCATC	2 cut(s)	184, 459
SfcI	CTRYAG	1 cut(s)	196
SfiI	GGCCNNNNNGGCC	1 cut(s)	434
SfoI	GGCGCC	2 cut(s)	244, 494
Sfr303I	CCGCGG	1 cut(s)	306
SgrBI	CCGCGG	1 cut(s)	306
SinI	GGWCC	2 cut(s)	148, 657
SmiMI	CAYNNNNRTG	1 cut(s)	359
Sse9I	AATT	1 cut(s)	748
SseBI	AGGCCT	1 cut(s)	428
SsiI	CCGC	7 cut(s)	274, 287, 303, 305, 409, 479, 536
SspDI	GGCGCC	2 cut(s)	242, 492
SspMI	CTAG	1 cut(s)	569
SstI	GAGCTC	1 cut(s)	205
StuI	AGGCCT	1 cut(s)	428
StyD4I	CCNGG	2 cut(s)	423, 659
TaaI	ACNGT	2 cut(s)	298, 419
TaqII	GACCGA	1 cut(s)	165
TasI	AATT	1 cut(s)	748
TauI	GCSGC	2 cut(s)	289, 305
TfiI	GAWTC	1 cut(s)	142
TscAI	CASTG	2 cut(s)	193, 301
TseFI	GTSAC	3 cut(s)	36, 72, 376
Tsp45I	GTSAC	3 cut(s)	36, 72, 376
TspRI	CASTG	2 cut(s)	193, 301
VpaK11BI	GGWCC	2 cut(s)	148, 657
XceI	RCATGY	1 cut(s)	175
XmnI	GAANNNNTTC	2 cut(s)	141, 713
XspI	CTAG	1 cut(s)	569
Zsp2I	ATGCAT	1 cut(s)	177

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.