Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr1

Orthogroup ID

OG0001629

Physical Location & Seq

Genomic Coordinates Reverse (-)

57129320 .. 57133226

Gene Structure 3907 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw1G029420.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 957 bp

ATGGCGTCATCGGTGACCTCCGACCACGAAGAGGAGCAGTCGCTGTTGCGAGATTCCGGCAATGTCGACGGCTCCTGGCGGTTGAACTTCGAGAGCTTCCAGGTGTCCTCGGAGCACAAGGAGAAGCCACCGCGGGCGGCCTTCCATGACTGTCTTGGAGTTAAAGGTCCGGAGGATAATGTGGCAGAGTATTATCAACAGCAGGTAGAAATGCTTGAGGGCTTTAACGAAATGGATGCCTTAGCGGAGCGGGGTTTTATTCCTGGAATGTCAAAGGAAGAGCGGGACAGTTTGGCTAAAAGTGAGACCTTCGCCATCAGAATATCAAATGTTGCAAACATGGCTCTTTTTGCAGCTAAAGTTTATGCGTCTTACAGAAGTGGTTCATTAGCCATTATTGCATCCACACTGGACTCATTGCTTGATCTTTTGTCTGGCTTCATCCTGTGGTTTACTGCATTCTCCATGCAAACCCCGAACCCTTATCAGTATCCAATTGGGAAGAGACGTATGCAGCCGTTGGGAATCCTTGTTTTTGCTTCTGTTATGGCAACGCTGGGACTGCAGATCATCTTAGAGTCTATGCGCACCCTGATTTCAGATGAGGATGTGTTCAGCTTGACCAAAGATCAAGAGCGATGGGTTGTGGGTATTATGCTCAGTGTCACTTTGGTGAAATTGCTTCTGATGCTTTATTGCCGCACTTTCACCAACGAAATTGTTAAAGCCTATGCCCAAGATCATTTCTTTGATGTTATCACCAACATAATTGGTCTGGTTGCTGTGCTCCTTGCTAATTACTTTGATGATTGGATGGACCCTGTTGGAGCTATAATTCTGGCTTTGTACACCATTCGCACCTGGTCAATGACTGTCTTGGAAAATGTGAATGGCGATACGCCATATCGACACAGTCCGTGCATACACCTTTGGCTCACACTACTTTGTCGAGGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000041 GO:0000139 GO:0003674 GO:0005215 GO:0005384 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005770 GO:0005794 GO:0006810 GO:0006811 GO:0006812 GO:0006828 GO:0006873 GO:0006875 GO:0008150 GO:0008324 GO:0009987 GO:0010008 GO:0010035 GO:0010038 GO:0010042 GO:0010486 GO:0012505 GO:0015075 GO:0015077 GO:0015078 GO:0015291 GO:0015297 GO:0015298 GO:0015299 GO:0015318 GO:0015491 GO:0015672 GO:0016020 GO:0019725 GO:0022804 GO:0022857 GO:0022890 GO:0030001 GO:0030003 GO:0030026 GO:0031090 GO:0031410 GO:0031902 GO:0031982 GO:0031984 GO:0034220 GO:0042221 GO:0042592 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044431 GO:0044433 GO:0044440 GO:0044444 GO:0044446 GO:0044464 GO:0046688 GO:0046873 GO:0046915 GO:0046916 GO:0048878 GO:0050801 GO:0050896 GO:0051139 GO:0051179 GO:0051234 GO:0055065 GO:0055071 GO:0055076 GO:0055080 GO:0055082 GO:0055085 GO:0065007 GO:0065008 GO:0071421 GO:0097708 GO:0098588 GO:0098655 GO:0098660 GO:0098662 GO:0098771 GO:0098791 GO:0098805 GO:0099516 GO:1902600

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cation_efflux ZT_dimer

Protein Analysis

318

Amino Acids

35.84

Weight (kDa)

4.9

Isoelectric Point (pI)

38.85

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cation_efflux	PF01545	108 - 295	3.9e-29	Cation efflux transmembrane domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001629)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G39450
fragaria_vesca	FvH4_3g14571 FvH4_3g14571 FvH4_7g21220 FvH4_7g21220
malus_domestica	MD01G1120600.v1.1 MD05G1235000.v1.1 MD07G1190000.v1.1
prunus_persica	Prupe.2G227500_v2.0.a1 Prupe.2G227500_v2.0.a1 Prupe.2G227500_v2.0.a1 Prupe.2G227500_v2.0.a1 Prupe.2G227500_v2.0.a1 Prupe.4G131200_v2.0.a1
pyrus_communis	pycom01g14720 pycom05g21190 pycom07g17960
rosa_chinensis	RchiOBHm_Chr1g0365671 RchiOBHm_Chr5g0024031 RchiOBHm_Chr5g0024041
rosa_laevigata	RLG00000032756
rosa_multiflora	Rmu_co8495291.1_g000001 Rmu_sc0002093.1_g000006 Rmu_sc0011761.1_g000003 Rmu_sc0011761.1_g000004 Rmu_sc0023483.1_g000001
rosa_roxburghii	Rroxscaffold_1G00055200 Rroxscaffold_1G00055210 Rroxscaffold_4G00291100
rosa_rugosa	Rorug01G0322400 Rorug01G0322500 Rorug05G0081100 Rorug05G0081100 Rorug05G0081200
rosa_samantha	Rh1AG331200 Rh1BG292600 Rh1CG309200 Rh1DG324200 Rh5AG171400 Rh5AG171500 Rh5BG168100 Rh5BG168200 Rh5CG183600 Rh5CG183700 Rh5DG170200 Rh5DG170300
rosa_wichuraiana	Rw1G029420 Rw5G015510 Rw5G015520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	587
Acc36I	ACCTGC	1 cut(s)	193
AccBSI	CCGCTC	2 cut(s)	250, 283
AccI	GTMKAC	1 cut(s)	66
AccII	CGCG	1 cut(s)	133
AccIII	TCCGGA	1 cut(s)	169
AciI	CCGC	8 cut(s)	79, 131, 133, 137, 245, 250, 283, 700
AcyI	GRCGYC	1 cut(s)	5
AfaI	GTAC	1 cut(s)	848
AfiI	CCNNNNNNNGG	1 cut(s)	31
AgsI	TTSAA	1 cut(s)	85
AjnI	CCWGG	4 cut(s)	74, 99, 262, 860
AleI	CACNNNNGTG	1 cut(s)	671
AluBI	AGCT	4 cut(s)	96, 356, 618, 830
AluI	AGCT	4 cut(s)	96, 356, 618, 830
Alw21I	GWGCWC	2 cut(s)	117, 789
Alw26I	GTCTC	2 cut(s)	299, 499
AlwNI	CAGNNNCTG	1 cut(s)	43
Aor13HI	TCCGGA	1 cut(s)	169
AoxI	GGCC	1 cut(s)	138
ApeKI	GCWGC	2 cut(s)	353, 514
Asp700I	GAANNNNTTC	1 cut(s)	382
AspLEI	GCGC	1 cut(s)	588
AspS9I	GGNCC	2 cut(s)	167, 817
AsuHPI	GGTGA	4 cut(s)	25, 685, 700, 751
AvaII	GGWCC	2 cut(s)	167, 817
Bbv12I	GWGCWC	2 cut(s)	117, 789
BbvI	GCAGC	2 cut(s)	365, 526
BccI	CCATC	3 cut(s)	323, 633, 808
BceAI	ACGGC	2 cut(s)	85, 502
BcgI	CGANNNNNNTGC	2 cut(s)	218, 252
BciT130I	CCWGG	4 cut(s)	76, 101, 264, 862
BciVI	GTATCC	1 cut(s)	501
BcoDI	GTCTC	2 cut(s)	299, 499
BfmI	CTRYAG	1 cut(s)	563
BfuAI	ACCTGC	1 cut(s)	193
BfuI	GTATCC	1 cut(s)	501
BisI	GCNGC	4 cut(s)	138, 354, 515, 700
BlsI	GCNGC	4 cut(s)	139, 355, 516, 701
Bme1390I	CCNGG	4 cut(s)	76, 101, 264, 862
Bme18I	GGWCC	2 cut(s)	167, 817
BmgT120I	GGNCC	2 cut(s)	167, 817
BmiI	GGNNCC	2 cut(s)	73, 819
BmrFI	CCNGG	4 cut(s)	76, 101, 264, 862
BmsI	GCATC	3 cut(s)	226, 410, 678
Bpu10I	CCTNAGC	1 cut(s)	241
BpuEI	CTTGAG	1 cut(s)	236
BsaHI	GRCGYC	1 cut(s)	5
BsaI	GGTCTC	1 cut(s)	299
BsaJI	CCNNGG	2 cut(s)	108, 131
BsaWI	WCCGGW	1 cut(s)	169
Bsc4I	CCNNNNNNNGG	1 cut(s)	31
Bse1I	ACTGG	1 cut(s)	414
Bse3DI	GCAATG	2 cut(s)	67, 416
BseAI	TCCGGA	1 cut(s)	169
BseBI	CCWGG	4 cut(s)	76, 101, 264, 862
BseDI	CCNNGG	2 cut(s)	108, 131
BseGI	GGATG	5 cut(s)	241, 401, 441, 613, 819
BseLI	CCNNNNNNNGG	1 cut(s)	31
BseMI	GCAATG	2 cut(s)	67, 416
BseMII	CTCAG	1 cut(s)	673
BseNI	ACTGG	1 cut(s)	414
BseRI	GAGGAG	1 cut(s)	47
BseXI	GCAGC	2 cut(s)	365, 526
BseYI	CCCAGC	1 cut(s)	556
Bsh1236I	CGCG	1 cut(s)	133
BshFI	GGCC	1 cut(s)	140
BsiHKAI	GWGCWC	2 cut(s)	117, 789
BsiSI	CCGG	2 cut(s)	57, 170
BslFI	GGGAC	2 cut(s)	299, 573
BslI	CCNNNNNNNGG	1 cut(s)	31
BsmAI	GTCTC	2 cut(s)	299, 499
BsmBI	CGTCTC	1 cut(s)	499
BsmFI	GGGAC	2 cut(s)	299, 573
BsmI	GAATGC	1 cut(s)	458
BsnI	GGCC	1 cut(s)	140
Bso31I	GGTCTC	1 cut(s)	299
Bsp1286I	GDGCHC	2 cut(s)	117, 789
Bsp13I	TCCGGA	1 cut(s)	169
Bsp1407I	TGTACA	1 cut(s)	846
Bsp143I	GATC	4 cut(s)	424, 567, 628, 739
BspACI	CCGC	8 cut(s)	79, 131, 133, 137, 245, 250, 283, 700
BspANI	GGCC	1 cut(s)	140
BspCNI	CTCAG	1 cut(s)	672
BspEI	TCCGGA	1 cut(s)	169
BspFNI	CGCG	1 cut(s)	133
BspLI	GGNNCC	2 cut(s)	73, 819
BspMAI	CTGCAG	1 cut(s)	567
BspMI	ACCTGC	1 cut(s)	193
BspQI	GCTCTTC	1 cut(s)	273
BspTNI	GGTCTC	1 cut(s)	299
BsrBI	CCGCTC	2 cut(s)	250, 283
BsrDI	GCAATG	2 cut(s)	67, 416
BsrGI	TGTACA	1 cut(s)	846
BsrI	ACTGG	1 cut(s)	414
BssECI	CCNNGG	2 cut(s)	108, 131
BssMI	GATC	4 cut(s)	424, 567, 628, 739
BssNI	GRCGYC	1 cut(s)	5
Bst2UI	CCWGG	4 cut(s)	76, 101, 264, 862
Bst4CI	ACNGT	4 cut(s)	152, 290, 874, 914
Bst6I	CTCTTC	3 cut(s)	24, 273, 497
BstACI	GRCGYC	1 cut(s)	5
BstAUI	TGTACA	1 cut(s)	846
BstC8I	GCNNGC	1 cut(s)	135
BstDEI	CTNAG	3 cut(s)	241, 574, 659
BstDSI	CCRYGG	1 cut(s)	131
BstEII	GGTNACC	1 cut(s)	13
BstF5I	GGATG	5 cut(s)	241, 401, 441, 613, 819
BstFNI	CGCG	1 cut(s)	133
BstHHI	GCGC	1 cut(s)	588
BstKTI	GATC	4 cut(s)	427, 570, 631, 742
BstMAI	GTCTC	2 cut(s)	299, 499
BstMBI	GATC	4 cut(s)	424, 567, 628, 739
BstMWI	GCNNNNNNNGC	5 cut(s)	341, 350, 398, 562, 688
BstNI	CCWGG	4 cut(s)	76, 101, 264, 862
BstPI	GGTNACC	1 cut(s)	13
BstSCI	CCNGG	4 cut(s)	74, 99, 262, 860
BstSFI	CTRYAG	1 cut(s)	563
BstUI	CGCG	1 cut(s)	133
BstV1I	GCAGC	2 cut(s)	365, 526
BsuI	GTATCC	1 cut(s)	501
BsuRI	GGCC	1 cut(s)	140
BtgI	CCRYGG	1 cut(s)	131
BtgZI	GCGATG	1 cut(s)	652
BtsCI	GGATG	5 cut(s)	241, 401, 441, 613, 819
BtsIMutI	CAGTG	2 cut(s)	407, 667
BveI	ACCTGC	1 cut(s)	193
Cac8I	GCNNGC	1 cut(s)	135
CaiI	CAGNNNCTG	1 cut(s)	43
CfoI	GCGC	1 cut(s)	588
Cfr13I	GGNCC	2 cut(s)	167, 817
Cfr42I	CCGCGG	1 cut(s)	134
CseI	GACGC	1 cut(s)	357
CsiI	ACCWGGT	1 cut(s)	860
Csp6I	GTAC	1 cut(s)	847
CviAII	CATG	3 cut(s)	146, 340, 466
CviQI	GTAC	1 cut(s)	847
DdeI	CTNAG	3 cut(s)	241, 574, 659
DpnI	GATC	4 cut(s)	426, 569, 630, 741
DpnII	GATC	4 cut(s)	424, 567, 628, 739
Eam1104I	CTCTTC	3 cut(s)	24, 273, 497
EarI	CTCTTC	3 cut(s)	24, 273, 497
Eco31I	GGTCTC	1 cut(s)	299
Eco47I	GGWCC	2 cut(s)	167, 817
Eco91I	GGTNACC	1 cut(s)	13
EcoO65I	GGTNACC	1 cut(s)	13
EcoRII	CCWGG	4 cut(s)	74, 99, 262, 860
Esp3I	CGTCTC	1 cut(s)	499
FaeI	CATG	3 cut(s)	149, 343, 469
FaqI	GGGAC	2 cut(s)	299, 573
FatI	CATG	3 cut(s)	145, 339, 465
FauI	CCCGC	3 cut(s)	126, 243, 276
FblI	GTMKAC	1 cut(s)	66
Fnu4HI	GCNGC	4 cut(s)	138, 354, 515, 700
FokI	GGATG	5 cut(s)	248, 388, 428, 620, 826
Fsp4HI	GCNGC	4 cut(s)	138, 354, 515, 700
FspAI	RTGCGCAY	1 cut(s)	587
FspI	TGCGCA	1 cut(s)	587
GlaI	GCGC	1 cut(s)	587
GluI	GCNGC	4 cut(s)	138, 354, 515, 700
GsaI	CCCAGC	1 cut(s)	560
HaeIII	GGCC	1 cut(s)	140
HapII	CCGG	2 cut(s)	57, 170
HgaI	GACGC	1 cut(s)	357
HhaI	GCGC	1 cut(s)	588
Hin1I	GRCGYC	1 cut(s)	5
Hin1II	CATG	3 cut(s)	149, 343, 469
Hin6I	GCGC	1 cut(s)	586
HinP1I	GCGC	1 cut(s)	586
HincII	GTYRAC	1 cut(s)	67
HindII	GTYRAC	1 cut(s)	67
HinfI	GANTC	4 cut(s)	53, 413, 525, 578
HpaII	CCGG	2 cut(s)	57, 170
HphI	GGTGA	4 cut(s)	25, 685, 700, 751
Hpy166II	GTNNAC	3 cut(s)	67, 453, 849
Hpy188I	TCNGA	5 cut(s)	22, 112, 320, 601, 687
Hpy188III	TCNNGA	3 cut(s)	91, 170, 632
Hpy8I	GTNNAC	3 cut(s)	67, 453, 849
Hpy99I	CGWCG	1 cut(s)	71
HpyAV	CCTTC	2 cut(s)	151, 319
HpyCH4III	ACNGT	4 cut(s)	152, 290, 874, 914
HpyCH4IV	ACGT	1 cut(s)	508
HpyCH4V	TGCA	8 cut(s)	335, 353, 401, 458, 469, 514, 565, 921
HpyF10VI	GCNNNNNNNGC	5 cut(s)	341, 350, 398, 562, 688
HpyF3I	CTNAG	3 cut(s)	241, 574, 659
HpySE526I	ACGT	1 cut(s)	508
Hsp92I	GRCGYC	1 cut(s)	5
Hsp92II	CATG	3 cut(s)	149, 343, 469
HspAI	GCGC	1 cut(s)	586
Kpn2I	TCCGGA	1 cut(s)	169
KspI	CCGCGG	1 cut(s)	134
Kzo9I	GATC	4 cut(s)	424, 567, 628, 739
LguI	GCTCTTC	1 cut(s)	273
LmnI	GCTCC	6 cut(s)	34, 77, 112, 247, 792, 827
Lsp1109I	GCAGC	2 cut(s)	365, 526
LweI	GCATC	3 cut(s)	226, 410, 678
MabI	ACCWGGT	1 cut(s)	860
MaeII	ACGT	1 cut(s)	508
MaeIII	GTNAC	2 cut(s)	13, 664
MalI	GATC	4 cut(s)	426, 569, 630, 741
MbiI	CCGCTC	2 cut(s)	250, 283
MboI	GATC	4 cut(s)	424, 567, 628, 739
MboII	GAAGA	3 cut(s)	41, 290, 514
MfeI	CAATTG	1 cut(s)	495
MhlI	GDGCHC	2 cut(s)	117, 789
MluCI	AATT	6 cut(s)	495, 677, 717, 768, 796, 834
MlyI	GAGTC	2 cut(s)	407, 587
MmeI	TCCRAC	2 cut(s)	45, 805
MnlI	CCTC	7 cut(s)	25, 28, 118, 166, 211, 598, 944
MroI	TCCGGA	1 cut(s)	169
MroXI	GAANNNNTTC	1 cut(s)	382
MseI	TTAA	3 cut(s)	162, 225, 723
MslI	CAYNNNNRTG	1 cut(s)	671
MspA1I	CMGCKG	1 cut(s)	133
MspI	CCGG	2 cut(s)	57, 170
MspR9I	CCNGG	4 cut(s)	76, 101, 264, 862
MunI	CAATTG	1 cut(s)	495
Mva1269I	GAATGC	1 cut(s)	458
MvaI	CCWGG	4 cut(s)	76, 101, 264, 862
MvnI	CGCG	1 cut(s)	133
MwoI	GCNNNNNNNGC	5 cut(s)	341, 350, 398, 562, 688
NdeII	GATC	4 cut(s)	424, 567, 628, 739
NlaIII	CATG	3 cut(s)	149, 343, 469
NlaIV	GGNNCC	2 cut(s)	73, 819
NmuCI	GTSAC	2 cut(s)	13, 664
NsbI	TGCGCA	1 cut(s)	587
OliI	CACNNNNGTG	1 cut(s)	671
PciSI	GCTCTTC	1 cut(s)	273
PctI	GAATGC	1 cut(s)	458
PdmI	GAANNNNTTC	1 cut(s)	382
PfeI	GAWTC	2 cut(s)	53, 525
PflFI	GACNNNGTC	1 cut(s)	912
PfoI	TCCNGGA	1 cut(s)	262
PkrI	GCNGC	4 cut(s)	139, 355, 516, 701
PleI	GAGTC	2 cut(s)	407, 586
PpsI	GAGTC	2 cut(s)	407, 586
Psp6I	CCWGG	4 cut(s)	74, 99, 262, 860
PspEI	GGTNACC	1 cut(s)	13
PspFI	CCCAGC	1 cut(s)	556
PspGI	CCWGG	4 cut(s)	74, 99, 262, 860
PspN4I	GGNNCC	2 cut(s)	73, 819
PspPI	GGNCC	2 cut(s)	167, 817
PstI	CTGCAG	1 cut(s)	567
PstNI	CAGNNNCTG	1 cut(s)	43
PsyI	GACNNNGTC	1 cut(s)	912
RsaI	GTAC	1 cut(s)	848
RsaNI	GTAC	1 cut(s)	847
RseI	CAYNNNNRTG	1 cut(s)	671
SacII	CCGCGG	1 cut(s)	134
SalI	GTCGAC	1 cut(s)	65
SapI	GCTCTTC	1 cut(s)	273
SaqAI	TTAA	3 cut(s)	162, 225, 723
SatI	GCNGC	4 cut(s)	138, 354, 515, 700
Sau3AI	GATC	4 cut(s)	424, 567, 628, 739
Sau96I	GGNCC	2 cut(s)	167, 817
SchI	GAGTC	2 cut(s)	407, 587
ScrFI	CCNGG	4 cut(s)	76, 101, 264, 862
SduI	GDGCHC	2 cut(s)	117, 789
SexAI	ACCWGGT	1 cut(s)	860
SfaNI	GCATC	3 cut(s)	226, 410, 678
SfcI	CTRYAG	1 cut(s)	563
Sfr303I	CCGCGG	1 cut(s)	134
SgrBI	CCGCGG	1 cut(s)	134
SinI	GGWCC	2 cut(s)	167, 817
SmiMI	CAYNNNNRTG	1 cut(s)	671
SmlI	CTYRAG	1 cut(s)	215
SmoI	CTYRAG	1 cut(s)	215
Sse9I	AATT	6 cut(s)	495, 677, 717, 768, 796, 834
SsiI	CCGC	8 cut(s)	79, 131, 133, 137, 245, 250, 283, 700
StyD4I	CCNGG	4 cut(s)	74, 99, 262, 860
TaaI	ACNGT	4 cut(s)	152, 290, 874, 914
TaiI	ACGT	1 cut(s)	511
TaqI	TCGA	4 cut(s)	66, 90, 907, 949
TasI	AATT	6 cut(s)	495, 677, 717, 768, 796, 834
TatI	WGTACW	1 cut(s)	846
TauI	GCSGC	2 cut(s)	140, 702
TfiI	GAWTC	2 cut(s)	53, 525
Tru1I	TTAA	3 cut(s)	162, 225, 723
Tru9I	TTAA	3 cut(s)	162, 225, 723
TscAI	CASTG	2 cut(s)	414, 667
TseFI	GTSAC	2 cut(s)	13, 664
TseI	GCWGC	2 cut(s)	353, 514
Tsp45I	GTSAC	2 cut(s)	13, 664
TspDTI	ATGAA	2 cut(s)	375, 430
TspGWI	ACGGA	1 cut(s)	906
TspRI	CASTG	2 cut(s)	414, 667
Tth111I	GACNNNGTC	1 cut(s)	912
VpaK11BI	GGWCC	2 cut(s)	167, 817
XcmI	CCANNNNNNNNNTGG	1 cut(s)	152
XmiI	GTMKAC	1 cut(s)	66
XmnI	GAANNNNTTC	1 cut(s)	382

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.