Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1D

Orthogroup ID

OG0001629

Physical Location & Seq

Genomic Coordinates Reverse (-)

55004560 .. 55008370

Gene Structure 3811 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1DG324200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 885 bp

ATGGCGTCATCGGTGACCTCCGACCACGAAGAGGAGCAGTCGCTGTTGCGAGATTCCGGCAATGTCGACGGCTCGTGGCGGTTGAACTTCGAGAGCTTCCAGGTGTCCTCGGAGCACAAGGAGAAGCCACCGCGGGCGGCCTTCCATGACTGTCTTGGAGTTAAAGGCCCGGAGGATAATGTGGCAGAGTATTATCAACAGCAGGTAGAAATGCTTGAGGGCTTTAATGAAATGGATGCCTTAGCGGAGCGGGGTTTTATTCCTGGAATGTCAAAGGAAGAGCGGGACAATTTGGCTAAAAGTGAGACCTTTGCCATCAGAATATCAAATGTTGCAAACATGGTTCTTTTTGCAGCTAAAGTTTATGCGTCTTACAGAAGTGGCTCATTAGCCATTATTGCATCCACACTGGACTCATTGCTTGATCTTTTGTCTGGCTTCATCCTGTGGTTTACTGCATTCTCCATGCAAACCCCGAACCCTTATCAGTATCCTATTGGGAAGAGACGTATGCAGCCGTTGGGAATCCTTGTTTTTGCTTCTGTCATGGCAACACTGGGACTGCAGATCATCTTAGAGTCTATGCGCACCCTGATTTCAGATGAGGACGTGTTCAGCTTGACCAAAGATCAAGAGCGATGGGTTGTGGGTATTATGCTCAGTGTCACTTTGGTGAAATTGCTTCTGATGCTTTACTGCCGCACTTTCACCAACGAAATTGTTAAAGCCTATGCCCAAGATCATTTCTTTGATGTTATCACCAACATCATTGGTCTGGTTGCTGTGCTCCTTGCTAATTACTTTGATGATTGGATGGACCCTGTTGGAGCTATCATTGTAAGTGGTTTTCCTTTCAATCCTGGCCCTCCAAATCAAATAATTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000041 GO:0000139 GO:0003674 GO:0005215 GO:0005384 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005770 GO:0005794 GO:0006810 GO:0006811 GO:0006812 GO:0006828 GO:0006873 GO:0006875 GO:0008150 GO:0008324 GO:0009987 GO:0010008 GO:0010035 GO:0010038 GO:0010042 GO:0010486 GO:0012505 GO:0015075 GO:0015077 GO:0015078 GO:0015291 GO:0015297 GO:0015298 GO:0015299 GO:0015318 GO:0015491 GO:0015672 GO:0016020 GO:0019725 GO:0022804 GO:0022857 GO:0022890 GO:0030001 GO:0030003 GO:0030026 GO:0031090 GO:0031410 GO:0031902 GO:0031982 GO:0031984 GO:0034220 GO:0042221 GO:0042592 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044431 GO:0044433 GO:0044440 GO:0044444 GO:0044446 GO:0044464 GO:0046688 GO:0046873 GO:0046915 GO:0046916 GO:0048878 GO:0050801 GO:0050896 GO:0051139 GO:0051179 GO:0051234 GO:0055065 GO:0055071 GO:0055076 GO:0055080 GO:0055082 GO:0055085 GO:0065007 GO:0065008 GO:0071421 GO:0097708 GO:0098588 GO:0098655 GO:0098660 GO:0098662 GO:0098771 GO:0098791 GO:0098805 GO:0099516 GO:1902600

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cation_efflux ZT_dimer

Protein Analysis

294

Amino Acids

32.93

Weight (kDa)

4.69

Isoelectric Point (pI)

40.05

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cation_efflux	PF01545	107 - 283	4.1e-28	Cation efflux transmembrane domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001629)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G39450
fragaria_vesca	FvH4_3g14571 FvH4_3g14571 FvH4_7g21220 FvH4_7g21220
malus_domestica	MD01G1120600.v1.1 MD05G1235000.v1.1 MD07G1190000.v1.1
prunus_persica	Prupe.2G227500_v2.0.a1 Prupe.2G227500_v2.0.a1 Prupe.2G227500_v2.0.a1 Prupe.2G227500_v2.0.a1 Prupe.2G227500_v2.0.a1 Prupe.4G131200_v2.0.a1
pyrus_communis	pycom01g14720 pycom05g21190 pycom07g17960
rosa_chinensis	RchiOBHm_Chr1g0365671 RchiOBHm_Chr5g0024031 RchiOBHm_Chr5g0024041
rosa_laevigata	RLG00000032756
rosa_multiflora	Rmu_co8495291.1_g000001 Rmu_sc0002093.1_g000006 Rmu_sc0011761.1_g000003 Rmu_sc0011761.1_g000004 Rmu_sc0023483.1_g000001
rosa_roxburghii	Rroxscaffold_1G00055200 Rroxscaffold_1G00055210 Rroxscaffold_4G00291100
rosa_rugosa	Rorug01G0322400 Rorug01G0322500 Rorug05G0081100 Rorug05G0081100 Rorug05G0081200
rosa_samantha	Rh1AG331200 Rh1BG292600 Rh1CG309200 Rh1DG324200 Rh5AG171400 Rh5AG171500 Rh5BG168100 Rh5BG168200 Rh5CG183600 Rh5CG183700 Rh5DG170200 Rh5DG170300
rosa_wichuraiana	Rw1G029420 Rw5G015510 Rw5G015520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	587
Acc36I	ACCTGC	1 cut(s)	193
AccBSI	CCGCTC	2 cut(s)	250, 283
AccI	GTMKAC	1 cut(s)	66
AccII	CGCG	1 cut(s)	133
AciI	CCGC	8 cut(s)	79, 131, 133, 137, 245, 250, 283, 700
AcyI	GRCGYC	1 cut(s)	5
AfiI	CCNNNNNNNGG	1 cut(s)	31
AflIII	ACRYGT	1 cut(s)	609
AgsI	TTSAA	2 cut(s)	85, 856
AjiI	CACGTC	1 cut(s)	610
AjnI	CCWGG	3 cut(s)	99, 262, 859
AleI	CACNNNNGTG	1 cut(s)	671
AluBI	AGCT	4 cut(s)	96, 356, 618, 830
AluI	AGCT	4 cut(s)	96, 356, 618, 830
Alw21I	GWGCWC	2 cut(s)	117, 789
Alw26I	GTCTC	2 cut(s)	299, 499
AlwNI	CAGNNNCTG	1 cut(s)	43
AoxI	GGCC	3 cut(s)	138, 166, 862
ApeKI	GCWGC	2 cut(s)	353, 514
AspLEI	GCGC	1 cut(s)	588
AspS9I	GGNCC	3 cut(s)	167, 817, 863
AsuC2I	CCSGG	1 cut(s)	170
AsuHPI	GGTGA	4 cut(s)	25, 685, 700, 751
AvaII	GGWCC	1 cut(s)	817
BauI	CACGAG	1 cut(s)	73
Bbv12I	GWGCWC	2 cut(s)	117, 789
BbvI	GCAGC	2 cut(s)	365, 526
BccI	CCATC	3 cut(s)	323, 633, 808
BceAI	ACGGC	2 cut(s)	85, 502
BciT130I	CCWGG	3 cut(s)	101, 264, 861
BciVI	GTATCC	1 cut(s)	501
BcnI	CCSGG	1 cut(s)	170
BcoDI	GTCTC	2 cut(s)	299, 499
BfmI	CTRYAG	1 cut(s)	563
BfuAI	ACCTGC	1 cut(s)	193
BfuI	GTATCC	1 cut(s)	501
BisI	GCNGC	4 cut(s)	138, 354, 515, 700
BlsI	GCNGC	4 cut(s)	139, 355, 516, 701
Bme1390I	CCNGG	4 cut(s)	101, 170, 264, 861
Bme18I	GGWCC	1 cut(s)	817
BmgBI	CACGTC	1 cut(s)	610
BmgT120I	GGNCC	3 cut(s)	167, 817, 863
BmiI	GGNNCC	1 cut(s)	819
BmrFI	CCNGG	4 cut(s)	101, 170, 264, 861
BmrI	ACTGGG	1 cut(s)	566
BmsI	GCATC	3 cut(s)	226, 410, 678
BmuI	ACTGGG	1 cut(s)	566
Bpu10I	CCTNAGC	1 cut(s)	241
BpuEI	CTTGAG	1 cut(s)	236
BpuMI	CCSGG	1 cut(s)	170
BsaHI	GRCGYC	1 cut(s)	5
BsaI	GGTCTC	1 cut(s)	299
BsaJI	CCNNGG	2 cut(s)	108, 131
Bsc4I	CCNNNNNNNGG	1 cut(s)	31
Bse1I	ACTGG	2 cut(s)	414, 561
Bse3DI	GCAATG	2 cut(s)	67, 416
BseBI	CCWGG	3 cut(s)	101, 264, 861
BseDI	CCNNGG	2 cut(s)	108, 131
BseGI	GGATG	4 cut(s)	241, 401, 441, 819
BseLI	CCNNNNNNNGG	1 cut(s)	31
BseMI	GCAATG	2 cut(s)	67, 416
BseMII	CTCAG	1 cut(s)	673
BseNI	ACTGG	2 cut(s)	414, 561
BseRI	GAGGAG	1 cut(s)	47
BseXI	GCAGC	2 cut(s)	365, 526
Bsh1236I	CGCG	1 cut(s)	133
BshFI	GGCC	3 cut(s)	140, 168, 864
BsiHKAI	GWGCWC	2 cut(s)	117, 789
BsiSI	CCGG	2 cut(s)	57, 170
BslFI	GGGAC	2 cut(s)	299, 573
BslI	CCNNNNNNNGG	1 cut(s)	31
BsmAI	GTCTC	2 cut(s)	299, 499
BsmBI	CGTCTC	1 cut(s)	499
BsmFI	GGGAC	2 cut(s)	299, 573
BsmI	GAATGC	1 cut(s)	458
BsnI	GGCC	3 cut(s)	140, 168, 864
Bso31I	GGTCTC	1 cut(s)	299
Bsp1286I	GDGCHC	2 cut(s)	117, 789
Bsp143I	GATC	4 cut(s)	424, 567, 628, 739
BspACI	CCGC	8 cut(s)	79, 131, 133, 137, 245, 250, 283, 700
BspANI	GGCC	3 cut(s)	140, 168, 864
BspCNI	CTCAG	1 cut(s)	672
BspFNI	CGCG	1 cut(s)	133
BspLI	GGNNCC	1 cut(s)	819
BspMAI	CTGCAG	1 cut(s)	567
BspMI	ACCTGC	1 cut(s)	193
BspQI	GCTCTTC	1 cut(s)	273
BspTNI	GGTCTC	1 cut(s)	299
BsrBI	CCGCTC	2 cut(s)	250, 283
BsrDI	GCAATG	2 cut(s)	67, 416
BsrI	ACTGG	2 cut(s)	414, 561
BssECI	CCNNGG	2 cut(s)	108, 131
BssMI	GATC	4 cut(s)	424, 567, 628, 739
BssNI	GRCGYC	1 cut(s)	5
BssSI	CACGAG	1 cut(s)	73
Bst2BI	CACGAG	1 cut(s)	73
Bst2UI	CCWGG	3 cut(s)	101, 264, 861
Bst4CI	ACNGT	1 cut(s)	152
Bst6I	CTCTTC	3 cut(s)	24, 273, 497
BstACI	GRCGYC	1 cut(s)	5
BstC8I	GCNNGC	1 cut(s)	135
BstDEI	CTNAG	3 cut(s)	241, 574, 659
BstDSI	CCRYGG	1 cut(s)	131
BstEII	GGTNACC	1 cut(s)	13
BstF5I	GGATG	4 cut(s)	241, 401, 441, 819
BstFNI	CGCG	1 cut(s)	133
BstHHI	GCGC	1 cut(s)	588
BstKTI	GATC	4 cut(s)	427, 570, 631, 742
BstMAI	GTCTC	2 cut(s)	299, 499
BstMBI	GATC	4 cut(s)	424, 567, 628, 739
BstMWI	GCNNNNNNNGC	2 cut(s)	398, 688
BstNI	CCWGG	3 cut(s)	101, 264, 861
BstPI	GGTNACC	1 cut(s)	13
BstSCI	CCNGG	4 cut(s)	99, 168, 262, 859
BstSFI	CTRYAG	1 cut(s)	563
BstUI	CGCG	1 cut(s)	133
BstV1I	GCAGC	2 cut(s)	365, 526
BsuI	GTATCC	1 cut(s)	501
BsuRI	GGCC	3 cut(s)	140, 168, 864
BtgI	CCRYGG	1 cut(s)	131
BtgZI	GCGATG	1 cut(s)	652
BtrI	CACGTC	1 cut(s)	610
BtsCI	GGATG	4 cut(s)	241, 401, 441, 819
BtsIMutI	CAGTG	3 cut(s)	407, 554, 667
BveI	ACCTGC	1 cut(s)	193
Cac8I	GCNNGC	1 cut(s)	135
CaiI	CAGNNNCTG	1 cut(s)	43
CfoI	GCGC	1 cut(s)	588
Cfr13I	GGNCC	3 cut(s)	167, 817, 863
Cfr42I	CCGCGG	1 cut(s)	134
CseI	GACGC	1 cut(s)	357
CviAII	CATG	4 cut(s)	146, 340, 466, 547
DdeI	CTNAG	3 cut(s)	241, 574, 659
DpnI	GATC	4 cut(s)	426, 569, 630, 741
DpnII	GATC	4 cut(s)	424, 567, 628, 739
Eam1104I	CTCTTC	3 cut(s)	24, 273, 497
EarI	CTCTTC	3 cut(s)	24, 273, 497
Eco31I	GGTCTC	1 cut(s)	299
Eco47I	GGWCC	1 cut(s)	817
Eco91I	GGTNACC	1 cut(s)	13
EcoO65I	GGTNACC	1 cut(s)	13
EcoRII	CCWGG	3 cut(s)	99, 262, 859
Esp3I	CGTCTC	1 cut(s)	499
FaeI	CATG	4 cut(s)	149, 343, 469, 550
FaiI	YATR	9 cut(s)	147, 341, 366, 467, 512, 548, 584, 656, 732
FaqI	GGGAC	2 cut(s)	299, 573
FatI	CATG	4 cut(s)	145, 339, 465, 546
FauI	CCCGC	3 cut(s)	126, 243, 276
FblI	GTMKAC	1 cut(s)	66
Fnu4HI	GCNGC	4 cut(s)	138, 354, 515, 700
FokI	GGATG	4 cut(s)	248, 388, 428, 826
Fsp4HI	GCNGC	4 cut(s)	138, 354, 515, 700
FspAI	RTGCGCAY	1 cut(s)	587
FspI	TGCGCA	1 cut(s)	587
GlaI	GCGC	1 cut(s)	587
GluI	GCNGC	4 cut(s)	138, 354, 515, 700
HaeIII	GGCC	3 cut(s)	140, 168, 864
HapII	CCGG	2 cut(s)	57, 170
HgaI	GACGC	1 cut(s)	357
HhaI	GCGC	1 cut(s)	588
Hin1I	GRCGYC	1 cut(s)	5
Hin1II	CATG	4 cut(s)	149, 343, 469, 550
Hin6I	GCGC	1 cut(s)	586
HinP1I	GCGC	1 cut(s)	586
HincII	GTYRAC	1 cut(s)	67
HindII	GTYRAC	1 cut(s)	67
HinfI	GANTC	4 cut(s)	53, 413, 525, 578
HpaII	CCGG	2 cut(s)	57, 170
HphI	GGTGA	4 cut(s)	25, 685, 700, 751
Hpy166II	GTNNAC	2 cut(s)	67, 453
Hpy188I	TCNGA	5 cut(s)	22, 112, 320, 601, 687
Hpy188III	TCNNGA	2 cut(s)	91, 632
Hpy8I	GTNNAC	2 cut(s)	67, 453
Hpy99I	CGWCG	1 cut(s)	71
HpyAV	CCTTC	1 cut(s)	151
HpyCH4III	ACNGT	1 cut(s)	152
HpyCH4IV	ACGT	2 cut(s)	508, 609
HpyCH4V	TGCA	7 cut(s)	335, 353, 401, 458, 469, 514, 565
HpyF10VI	GCNNNNNNNGC	2 cut(s)	398, 688
HpyF3I	CTNAG	3 cut(s)	241, 574, 659
HpySE526I	ACGT	2 cut(s)	508, 609
Hsp92I	GRCGYC	1 cut(s)	5
Hsp92II	CATG	4 cut(s)	149, 343, 469, 550
HspAI	GCGC	1 cut(s)	586
KspI	CCGCGG	1 cut(s)	134
Kzo9I	GATC	4 cut(s)	424, 567, 628, 739
LguI	GCTCTTC	1 cut(s)	273
LmnI	GCTCC	5 cut(s)	34, 112, 247, 792, 827
Lsp1109I	GCAGC	2 cut(s)	365, 526
LweI	GCATC	3 cut(s)	226, 410, 678
MaeII	ACGT	2 cut(s)	508, 609
MaeIII	GTNAC	2 cut(s)	13, 664
MalI	GATC	4 cut(s)	426, 569, 630, 741
MbiI	CCGCTC	2 cut(s)	250, 283
MboI	GATC	4 cut(s)	424, 567, 628, 739
MboII	GAAGA	3 cut(s)	41, 290, 514
MhlI	GDGCHC	2 cut(s)	117, 789
MluCI	AATT	5 cut(s)	289, 677, 717, 796, 879
MlyI	GAGTC	2 cut(s)	407, 587
MmeI	TCCRAC	2 cut(s)	45, 805
MnlI	CCTC	7 cut(s)	25, 28, 118, 166, 211, 598, 876
MseI	TTAA	4 cut(s)	162, 225, 723, 883
MslI	CAYNNNNRTG	1 cut(s)	671
MspA1I	CMGCKG	1 cut(s)	133
MspI	CCGG	2 cut(s)	57, 170
MspR9I	CCNGG	4 cut(s)	101, 170, 264, 861
Mva1269I	GAATGC	1 cut(s)	458
MvaI	CCWGG	3 cut(s)	101, 264, 861
MvnI	CGCG	1 cut(s)	133
MwoI	GCNNNNNNNGC	2 cut(s)	398, 688
NciI	CCSGG	1 cut(s)	170
NdeII	GATC	4 cut(s)	424, 567, 628, 739
NlaIII	CATG	4 cut(s)	149, 343, 469, 550
NlaIV	GGNNCC	1 cut(s)	819
NmuCI	GTSAC	2 cut(s)	13, 664
NsbI	TGCGCA	1 cut(s)	587
OliI	CACNNNNGTG	1 cut(s)	671
PciSI	GCTCTTC	1 cut(s)	273
PctI	GAATGC	1 cut(s)	458
PfeI	GAWTC	2 cut(s)	53, 525
PfoI	TCCNGGA	1 cut(s)	262
PkrI	GCNGC	4 cut(s)	139, 355, 516, 701
PleI	GAGTC	2 cut(s)	407, 586
PpsI	GAGTC	2 cut(s)	407, 586
Psp6I	CCWGG	3 cut(s)	99, 262, 859
PspEI	GGTNACC	1 cut(s)	13
PspGI	CCWGG	3 cut(s)	99, 262, 859
PspN4I	GGNNCC	1 cut(s)	819
PspPI	GGNCC	3 cut(s)	167, 817, 863
PstI	CTGCAG	1 cut(s)	567
PstNI	CAGNNNCTG	1 cut(s)	43
RseI	CAYNNNNRTG	1 cut(s)	671
SacII	CCGCGG	1 cut(s)	134
SalI	GTCGAC	1 cut(s)	65
SapI	GCTCTTC	1 cut(s)	273
SaqAI	TTAA	4 cut(s)	162, 225, 723, 883
SatI	GCNGC	4 cut(s)	138, 354, 515, 700
Sau3AI	GATC	4 cut(s)	424, 567, 628, 739
Sau96I	GGNCC	3 cut(s)	167, 817, 863
SchI	GAGTC	2 cut(s)	407, 587
ScrFI	CCNGG	4 cut(s)	101, 170, 264, 861
SduI	GDGCHC	2 cut(s)	117, 789
SfaNI	GCATC	3 cut(s)	226, 410, 678
SfcI	CTRYAG	1 cut(s)	563
Sfr303I	CCGCGG	1 cut(s)	134
SgrBI	CCGCGG	1 cut(s)	134
SinI	GGWCC	1 cut(s)	817
SmiMI	CAYNNNNRTG	1 cut(s)	671
SmlI	CTYRAG	1 cut(s)	215
SmoI	CTYRAG	1 cut(s)	215
Sse9I	AATT	5 cut(s)	289, 677, 717, 796, 879
SsiI	CCGC	8 cut(s)	79, 131, 133, 137, 245, 250, 283, 700
StyD4I	CCNGG	4 cut(s)	99, 168, 262, 859
TaaI	ACNGT	1 cut(s)	152
TaiI	ACGT	2 cut(s)	511, 612
TaqI	TCGA	2 cut(s)	66, 90
TasI	AATT	5 cut(s)	289, 677, 717, 796, 879
TauI	GCSGC	2 cut(s)	140, 702
TfiI	GAWTC	2 cut(s)	53, 525
Tru1I	TTAA	4 cut(s)	162, 225, 723, 883
Tru9I	TTAA	4 cut(s)	162, 225, 723, 883
TscAI	CASTG	3 cut(s)	414, 561, 667
TseFI	GTSAC	2 cut(s)	13, 664
TseI	GCWGC	2 cut(s)	353, 514
Tsp45I	GTSAC	2 cut(s)	13, 664
TspDTI	ATGAA	2 cut(s)	243, 430
TspRI	CASTG	3 cut(s)	414, 561, 667
VpaK11BI	GGWCC	1 cut(s)	817
XcmI	CCANNNNNNNNNTGG	1 cut(s)	152
XmiI	GTMKAC	1 cut(s)	66

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.