Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0002461

Physical Location & Seq

Genomic Coordinates Forward (+)

17221840 .. 17224880

Gene Structure 3041 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G41310.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 678 bp

ATGGTAATGGAAACAGAGTCAAAGTTCCATGTTTTAGCTGTTGATGATAGTCTTTTTGATCGGAAAATGATTGAGAGATTGCTTCAAAAGTCTTCATGTCAAGTAACTACAGTTGATTCAGGCTCTAAAGCTCTGGAATTTCTGGGTTTAAGAGTAGATGACAACGACCCAAATGCACTCTCTACATCGCCACAAATTCATCAGGAAGTTGAAATAAATCTAATAATTACAGATTACTGTATGCCTGGCATGACTGGTTATGATTTGCTCAAGAAAGTTAAGGAATCAGCGGCGTTTAGAAGTATACCTGTAGTTATAATGTCATCTGAGAACGTTCCTGCAAGAATCTCCAGATGTTTGGAAGAAGGAGCTGAAGAGTTTTTCTTGAAACCAGTGAAGTTAGCTGATCTTACCAAGTTGAAACCTCATATGATGAAAACGAAGTTGAAGAAAGAAAGTGAGAAACCAGTTGCCATAGAAGAGATTGTGGTGTCTAAACCGGAGATAGAAGAAGAAGAAGAAGAGTCATCAGTGATTGAAATCTTGCCTCTCCACCAAGAAATTGAATCCGAACAACTTGAACCAATGTTGAGTAGTAATAAGAGAAAAGCAATGGAAGAAGTGGTTTCTACTGATCGATCACGTCCTAAATACAATGATATCACAACCTCGGTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000156 GO:0000160 GO:0003674 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007154 GO:0007165 GO:0007623 GO:0008150 GO:0009719 GO:0009725 GO:0009735 GO:0009736 GO:0009755 GO:0009889 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0023052 GO:0031323 GO:0031326 GO:0032870 GO:0035556 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048511 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0060089 GO:0060255 GO:0065007 GO:0070887 GO:0071310 GO:0071368 GO:0071495 GO:0080090 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

Response_reg

Protein Analysis

225

Amino Acids

25.47

Weight (kDa)

4.9

Isoelectric Point (pI)

74.47

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Response_reg	PF00072	11 - 139	1.6e-17	Response regulator receiver domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0002461)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G07440 AT2G41310 AT3G57040 AT3G57040
fragaria_vesca	FvH4_6g25290 FvH4_7g02970
malus_domestica	MD02G1288300.v1.1 MD07G1038500.v1.1 MD12G1093500.v1.1 MD14G1086100.v1.1
prunus_persica	Prupe.2G034700_v2.0.a1 Prupe.7G041600_v2.0.a1
pyrus_communis	pycom12g07920 pycom14g07600
rosa_chinensis	RchiOBHm_Chr1g0323961 RchiOBHm_Chr1g0360681 RchiOBHm_Chr2g0125351
rosa_laevigata	RLG00000018858 RLG00000030239
rosa_multiflora	Rmu_sc0002529.1_g000022 Rmu_sc0002631.1_g000008 Rmu_sc0006175.1_g000025 Rmu_sc0006399.1_g000002
rosa_roxburghii	Rroxscaffold_2G00118090 Rroxscaffold_4G00326040
rosa_rugosa	Rorug01G0040800 Rorug02G0256900
rosa_samantha	Rh1AG058100 Rh1AG058700 Rh1BG049200 Rh1BG049700 Rh1CG060700 Rh1DG064600 Rh2AG315100 Rh2BG323200 Rh2CG305500 Rh2DG341800
rosa_wichuraiana	Rw0G023530 Rw1G004980 Rw1G005010 Rw2G025470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	317
AccI	GTMKAC	1 cut(s)	304
AciI	CCGC	1 cut(s)	290
AclI	AACGTT	1 cut(s)	333
AcsI	RAATTY	2 cut(s)	137, 195
AcuI	CTGAAG	1 cut(s)	393
AgsI	TTSAA	8 cut(s)	86, 212, 388, 421, 448, 539, 566, 581
AjiI	CACGTC	1 cut(s)	644
AjnI	CCWGG	1 cut(s)	244
AluBI	AGCT	4 cut(s)	38, 131, 371, 404
AluI	AGCT	4 cut(s)	38, 131, 371, 404
ApoI	RAATTY	2 cut(s)	137, 195
BbsI	GAAGAC	1 cut(s)	84
BcgI	CGANNNNNNTGC	2 cut(s)	155, 189
BciT130I	CCWGG	1 cut(s)	246
BfmI	CTRYAG	2 cut(s)	108, 309
BisI	GCNGC	1 cut(s)	291
BlsI	GCNGC	1 cut(s)	292
Bme1390I	CCNGG	1 cut(s)	246
BmgBI	CACGTC	1 cut(s)	644
BmrFI	CCNGG	1 cut(s)	246
BpiI	GAAGAC	1 cut(s)	84
BpmI	CTGGAG	1 cut(s)	334
BpuEI	CTTGAG	1 cut(s)	254
Bsa29I	ATCGAT	1 cut(s)	637
BsaBI	GATNNNNATC	1 cut(s)	539
BsaJI	CCNNGG	1 cut(s)	669
BsaWI	WCCGGW	1 cut(s)	499
Bse1I	ACTGG	3 cut(s)	259, 392, 467
Bse3DI	GCAATG	1 cut(s)	618
Bse8I	GATNNNNATC	1 cut(s)	539
BseBI	CCWGG	1 cut(s)	246
BseCI	ATCGAT	1 cut(s)	637
BseDI	CCNNGG	1 cut(s)	669
BseJI	GATNNNNATC	1 cut(s)	539
BseMI	GCAATG	1 cut(s)	618
BseMII	CTCAG	1 cut(s)	318
BseNI	ACTGG	3 cut(s)	259, 392, 467
BshVI	ATCGAT	1 cut(s)	637
BsiSI	CCGG	1 cut(s)	500
Bsp143I	GATC	4 cut(s)	58, 406, 634, 638
BspACI	CCGC	1 cut(s)	290
BspCNI	CTCAG	1 cut(s)	319
BspDI	ATCGAT	1 cut(s)	637
BsrDI	GCAATG	1 cut(s)	618
BsrI	ACTGG	3 cut(s)	259, 392, 467
BssECI	CCNNGG	1 cut(s)	669
BssMI	GATC	4 cut(s)	58, 406, 634, 638
BssNAI	GTATAC	1 cut(s)	305
Bst1107I	GTATAC	1 cut(s)	305
Bst2UI	CCWGG	1 cut(s)	246
Bst4CI	ACNGT	2 cut(s)	112, 239
Bst6I	CTCTTC	3 cut(s)	369, 474, 516
BstDEI	CTNAG	1 cut(s)	327
BstKTI	GATC	4 cut(s)	61, 409, 637, 641
BstMBI	GATC	4 cut(s)	58, 406, 634, 638
BstNI	CCWGG	1 cut(s)	246
BstSCI	CCNGG	1 cut(s)	244
BstSFI	CTRYAG	2 cut(s)	108, 309
BstV2I	GAAGAC	1 cut(s)	84
BstXI	CCANNNNNNTGG	1 cut(s)	358
BstZ17I	GTATAC	1 cut(s)	305
Bsu15I	ATCGAT	1 cut(s)	637
BsuTUI	ATCGAT	1 cut(s)	637
BtgZI	GCGATG	1 cut(s)	171
BtrI	CACGTC	1 cut(s)	644
BtsIMutI	CAGTG	2 cut(s)	399, 537
ClaI	ATCGAT	1 cut(s)	637
CviAII	CATG	3 cut(s)	29, 96, 250
CviJI	RGCY	5 cut(s)	38, 123, 131, 371, 404
CviKI_1	RGCY	5 cut(s)	38, 123, 131, 371, 404
DdeI	CTNAG	1 cut(s)	327
DpnI	GATC	4 cut(s)	60, 408, 636, 640
DpnII	GATC	4 cut(s)	58, 406, 634, 638
Eam1104I	CTCTTC	3 cut(s)	369, 474, 516
EarI	CTCTTC	3 cut(s)	369, 474, 516
Eco32I	GATATC	1 cut(s)	661
Eco57I	CTGAAG	1 cut(s)	393
EcoRII	CCWGG	1 cut(s)	244
EcoRV	GATATC	1 cut(s)	661
FaeI	CATG	3 cut(s)	32, 99, 253
FatI	CATG	3 cut(s)	28, 95, 249
FauNDI	CATATG	1 cut(s)	429
FblI	GTMKAC	1 cut(s)	304
Fnu4HI	GCNGC	1 cut(s)	291
Fsp4HI	GCNGC	1 cut(s)	291
GluI	GCNGC	1 cut(s)	291
GsuI	CTGGAG	1 cut(s)	334
HapII	CCGG	1 cut(s)	500
Hin1II	CATG	3 cut(s)	32, 99, 253
HinfI	GANTC	6 cut(s)	17, 116, 284, 345, 524, 566
HpaII	CCGG	1 cut(s)	500
Hpy166II	GTNNAC	1 cut(s)	305
Hpy188I	TCNGA	4 cut(s)	63, 328, 571, 677
Hpy188III	TCNNGA	5 cut(s)	134, 203, 271, 351, 385
Hpy8I	GTNNAC	1 cut(s)	305
HpyAV	CCTTC	1 cut(s)	359
HpyCH4III	ACNGT	2 cut(s)	112, 239
HpyCH4IV	ACGT	2 cut(s)	333, 643
HpyCH4V	TGCA	2 cut(s)	176, 341
HpyF3I	CTNAG	1 cut(s)	327
HpySE526I	ACGT	2 cut(s)	333, 643
Hsp92II	CATG	3 cut(s)	32, 99, 253
Kzo9I	GATC	4 cut(s)	58, 406, 634, 638
LmnI	GCTCC	1 cut(s)	368
MaeII	ACGT	2 cut(s)	333, 643
MaeIII	GTNAC	1 cut(s)	103
MalI	GATC	4 cut(s)	60, 408, 636, 640
MboI	GATC	4 cut(s)	58, 406, 634, 638
MluCI	AATT	4 cut(s)	137, 195, 225, 561
MlyI	GAGTC	2 cut(s)	26, 533
MnlI	CCTC	2 cut(s)	435, 558
MseI	TTAA	2 cut(s)	149, 279
MspA1I	CMGCKG	1 cut(s)	290
MspI	CCGG	1 cut(s)	500
MspR9I	CCNGG	1 cut(s)	246
MvaI	CCWGG	1 cut(s)	246
NdeI	CATATG	1 cut(s)	429
NdeII	GATC	4 cut(s)	58, 406, 634, 638
NlaIII	CATG	3 cut(s)	32, 99, 253
PfeI	GAWTC	4 cut(s)	116, 284, 345, 566
PkrI	GCNGC	1 cut(s)	292
PleI	GAGTC	2 cut(s)	25, 532
PpsI	GAGTC	2 cut(s)	25, 532
PsiI	TTATAA	1 cut(s)	317
Psp1406I	AACGTT	1 cut(s)	333
Psp6I	CCWGG	1 cut(s)	244
PspGI	CCWGG	1 cut(s)	244
SaqAI	TTAA	2 cut(s)	149, 279
SatI	GCNGC	1 cut(s)	291
Sau3AI	GATC	4 cut(s)	58, 406, 634, 638
SchI	GAGTC	2 cut(s)	26, 533
ScrFI	CCNGG	1 cut(s)	246
SetI	ASST	9 cut(s)	40, 133, 310, 336, 373, 406, 427, 646, 671
SfcI	CTRYAG	2 cut(s)	108, 309
SmlI	CTYRAG	1 cut(s)	269
SmoI	CTYRAG	1 cut(s)	269
Sse9I	AATT	4 cut(s)	137, 195, 225, 561
SsiI	CCGC	1 cut(s)	290
StyD4I	CCNGG	1 cut(s)	244
TaaI	ACNGT	2 cut(s)	112, 239
TaiI	ACGT	2 cut(s)	336, 646
TaqI	TCGA	1 cut(s)	637
TaqII	GACCGA	1 cut(s)	661
TasI	AATT	4 cut(s)	137, 195, 225, 561
TauI	GCSGC	1 cut(s)	293
TfiI	GAWTC	4 cut(s)	116, 284, 345, 566
Tru1I	TTAA	2 cut(s)	149, 279
Tru9I	TTAA	2 cut(s)	149, 279
TscAI	CASTG	2 cut(s)	399, 537
TspDTI	ATGAA	3 cut(s)	84, 188, 449
TspRI	CASTG	2 cut(s)	399, 537
XapI	RAATTY	2 cut(s)	137, 195
XmiI	GTMKAC	1 cut(s)	304

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.