Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr14

Orthogroup ID

OG0002461

Physical Location & Seq

Genomic Coordinates Forward (+)

10509153 .. 10510997

Gene Structure 1845 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD14G1086100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 648 bp

ATGGGGATGTCTGCCACAGATTCACAGTTTCACGTTCTAGCTGTTGATGACAGCGTCATCGATCGAAAGCTGATCGAGAGGCTCCTCAAGACCTCATCGTATCAAGTTACTACAGTTGATTCTGGTAGCAAGGCTCTTGAGTTTCTGGGGTTTTATGAGGATGACCAAAGCAGTTCAGATTCACCTTCTGTCTCCCCAAACAATCAACGGGAAGTGGGAGTGAATCTTGTAATTACAGACTACTGTATGCCTGGAATGACAGGATATGATTTGCTCAAGAAAATCAAGGAGTCTTCATCTCTGAGGAACATACCTGTTGTGATCATGTCATCTGAGAATGTGCCTTCAAGAATCACCAGATGCTTGGAAGAAGGGGCTGAGGAGTTTTTCTTAAAGCCAGTGAGACTATCAGACTTGAGCAGGCTTAGACCCCATTTGATGAAAACCAAGTCCAGCAATCAAAACCAAGAAAAACAAGAAGATGAATCTGAAAACTCAGAGACTCAATCACAGGAGCAGGATCATGAACTAGAACAGCAACAACCGCAAACGATGCCGCTCAACAATAACAAGAGGAAGGGAATGGAAGAGGGGCTTTCACCTGATAGAACTAGACCCAGATACGGTGGGATCGCCACTCTGGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000156 GO:0000160 GO:0003674 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007154 GO:0007165 GO:0007623 GO:0008150 GO:0009719 GO:0009725 GO:0009735 GO:0009736 GO:0009755 GO:0009889 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0023052 GO:0031323 GO:0031326 GO:0032870 GO:0035556 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048511 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0060089 GO:0060255 GO:0065007 GO:0070887 GO:0071310 GO:0071368 GO:0071495 GO:0080090 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

Response_reg

Protein Analysis

216

Amino Acids

24.22

Weight (kDa)

4.96

Isoelectric Point (pI)

71.85

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Response_reg	PF00072	12 - 139	1.1e-18	Response regulator receiver domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002461)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G07440 AT2G41310 AT3G57040 AT3G57040
fragaria_vesca	FvH4_6g25290 FvH4_7g02970
malus_domestica	MD02G1288300.v1.1 MD07G1038500.v1.1 MD12G1093500.v1.1 MD14G1086100.v1.1
prunus_persica	Prupe.2G034700_v2.0.a1 Prupe.7G041600_v2.0.a1
pyrus_communis	pycom12g07920 pycom14g07600
rosa_chinensis	RchiOBHm_Chr1g0323961 RchiOBHm_Chr1g0360681 RchiOBHm_Chr2g0125351
rosa_laevigata	RLG00000018858 RLG00000030239
rosa_multiflora	Rmu_sc0002529.1_g000022 Rmu_sc0002631.1_g000008 Rmu_sc0006175.1_g000025 Rmu_sc0006399.1_g000002
rosa_roxburghii	Rroxscaffold_2G00118090 Rroxscaffold_4G00326040
rosa_rugosa	Rorug01G0040800 Rorug02G0256900
rosa_samantha	Rh1AG058100 Rh1AG058700 Rh1BG049200 Rh1BG049700 Rh1CG060700 Rh1DG064600 Rh2AG315100 Rh2BG323200 Rh2CG305500 Rh2DG341800
rosa_wichuraiana	Rw0G023530 Rw1G004980 Rw1G005010 Rw2G025470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	559
AciI	CCGC	2 cut(s)	545, 557
AclWI	GGATC	2 cut(s)	528, 638
AfiI	CCNNNNNNNGG	1 cut(s)	623
AgsI	TTSAA	1 cut(s)	348
AjnI	CCWGG	1 cut(s)	250
AluBI	AGCT	2 cut(s)	41, 70
AluI	AGCT	2 cut(s)	41, 70
Alw26I	GTCTC	3 cut(s)	196, 397, 494
AlwI	GGATC	2 cut(s)	528, 638
AsuHPI	GGTGA	3 cut(s)	174, 346, 591
BbsI	GAAGAC	1 cut(s)	285
BbvCI	CCTCAGC	1 cut(s)	378
BciT130I	CCWGG	1 cut(s)	252
BclI	TGATCA	1 cut(s)	321
BcoDI	GTCTC	3 cut(s)	196, 397, 494
BfaI	CTAG	3 cut(s)	38, 530, 612
BfmI	CTRYAG	1 cut(s)	111
BisI	GCNGC	1 cut(s)	557
BlsI	GCNGC	1 cut(s)	558
Bme1390I	CCNGG	1 cut(s)	252
BmiI	GGNNCC	1 cut(s)	83
BmrFI	CCNGG	1 cut(s)	252
BmsI	GCATC	2 cut(s)	350, 543
BpiI	GAAGAC	1 cut(s)	285
Bpu10I	CCTNAGC	1 cut(s)	378
BpuEI	CTTGAG	4 cut(s)	71, 158, 260, 436
Bsa29I	ATCGAT	1 cut(s)	60
Bsc4I	CCNNNNNNNGG	1 cut(s)	623
Bse1I	ACTGG	1 cut(s)	398
BseBI	CCWGG	1 cut(s)	252
BseCI	ATCGAT	1 cut(s)	60
BseGI	GGATG	2 cut(s)	12, 166
BseLI	CCNNNNNNNGG	1 cut(s)	623
BseMII	CTCAG	4 cut(s)	293, 324, 369, 510
BseNI	ACTGG	1 cut(s)	398
BseRI	GAGGAG	2 cut(s)	74, 395
Bsh1285I	CGRYCG	1 cut(s)	64
BshVI	ATCGAT	1 cut(s)	60
BsiEI	CGRYCG	1 cut(s)	64
BslI	CCNNNNNNNGG	1 cut(s)	623
BsmAI	GTCTC	3 cut(s)	196, 397, 494
Bsp143I	GATC	5 cut(s)	61, 72, 321, 520, 630
BspACI	CCGC	2 cut(s)	545, 557
BspCNI	CTCAG	4 cut(s)	294, 325, 370, 509
BspDI	ATCGAT	1 cut(s)	60
BspHI	TCATGA	1 cut(s)	523
BspLI	GGNNCC	1 cut(s)	83
BspPI	GGATC	2 cut(s)	528, 638
BsrBI	CCGCTC	1 cut(s)	559
BsrI	ACTGG	1 cut(s)	398
BssMI	GATC	5 cut(s)	61, 72, 321, 520, 630
Bst2UI	CCWGG	1 cut(s)	252
Bst4CI	ACNGT	4 cut(s)	27, 115, 245, 626
Bst6I	CTCTTC	1 cut(s)	582
BstAPI	GCANNNNNTGC	1 cut(s)	553
BstC8I	GCNNGC	1 cut(s)	422
BstDEI	CTNAG	5 cut(s)	302, 333, 378, 425, 496
BstF5I	GGATG	2 cut(s)	12, 166
BstKTI	GATC	5 cut(s)	64, 75, 324, 523, 633
BstMAI	GTCTC	3 cut(s)	196, 397, 494
BstMBI	GATC	5 cut(s)	61, 72, 321, 520, 630
BstMCI	CGRYCG	1 cut(s)	64
BstMWI	GCNNNNNNNGC	2 cut(s)	544, 553
BstNI	CCWGG	1 cut(s)	252
BstSCI	CCNGG	1 cut(s)	250
BstSFI	CTRYAG	1 cut(s)	111
BstV2I	GAAGAC	1 cut(s)	285
BstXI	CCANNNNNNTGG	1 cut(s)	364
Bsu15I	ATCGAT	1 cut(s)	60
BsuTUI	ATCGAT	1 cut(s)	60
BtsCI	GGATG	2 cut(s)	12, 166
BtsIMutI	CAGTG	1 cut(s)	405
Cac8I	GCNNGC	1 cut(s)	422
CciI	TCATGA	1 cut(s)	523
ClaI	ATCGAT	1 cut(s)	60
CseI	GACGC	1 cut(s)	43
CviAII	CATG	2 cut(s)	325, 524
CviJI	RGCY	8 cut(s)	41, 70, 82, 134, 377, 397, 424, 595
CviKI_1	RGCY	8 cut(s)	41, 70, 82, 134, 377, 397, 424, 595
DdeI	CTNAG	5 cut(s)	302, 333, 378, 425, 496
DpnI	GATC	5 cut(s)	63, 74, 323, 522, 632
DpnII	GATC	5 cut(s)	61, 72, 321, 520, 630
Eam1104I	CTCTTC	1 cut(s)	582
EarI	CTCTTC	1 cut(s)	582
EcoRII	CCWGG	1 cut(s)	250
FaeI	CATG	2 cut(s)	328, 527
FaiI	YATR	6 cut(s)	156, 248, 267, 311, 326, 525
FalI	AAGNNNNNCTT	2 cut(s)	579, 611
FatI	CATG	2 cut(s)	324, 523
FbaI	TGATCA	1 cut(s)	321
Fnu4HI	GCNGC	1 cut(s)	557
FokI	GGATG	2 cut(s)	19, 173
Fsp4HI	GCNGC	1 cut(s)	557
FspBI	CTAG	3 cut(s)	38, 530, 612
GluI	GCNGC	1 cut(s)	557
HgaI	GACGC	1 cut(s)	43
Hin1II	CATG	2 cut(s)	328, 527
HinfI	GANTC	8 cut(s)	20, 119, 179, 223, 290, 351, 485, 502
HphI	GGTGA	3 cut(s)	174, 346, 591
Hpy188I	TCNGA	6 cut(s)	178, 303, 334, 412, 490, 499
Hpy188III	TCNNGA	6 cut(s)	76, 88, 137, 277, 348, 524
HpyAV	CCTTC	4 cut(s)	195, 354, 365, 571
HpyCH4III	ACNGT	4 cut(s)	27, 115, 245, 626
HpyCH4IV	ACGT	1 cut(s)	33
HpyF10VI	GCNNNNNNNGC	2 cut(s)	544, 553
HpyF3I	CTNAG	5 cut(s)	302, 333, 378, 425, 496
HpySE526I	ACGT	1 cut(s)	33
Hsp92II	CATG	2 cut(s)	328, 527
Ksp22I	TGATCA	1 cut(s)	321
Kzo9I	GATC	5 cut(s)	61, 72, 321, 520, 630
LmnI	GCTCC	2 cut(s)	87, 514
LweI	GCATC	2 cut(s)	350, 543
MaeI	CTAG	3 cut(s)	38, 530, 612
MaeII	ACGT	1 cut(s)	33
MaeIII	GTNAC	1 cut(s)	106
MalI	GATC	5 cut(s)	63, 74, 323, 522, 632
MbiI	CCGCTC	1 cut(s)	559
MboI	GATC	5 cut(s)	61, 72, 321, 520, 630
MboII	GAAGA	4 cut(s)	285, 380, 491, 599
MluCI	AATT	1 cut(s)	231
MlyI	GAGTC	2 cut(s)	299, 496
MnlI	CCTC	8 cut(s)	72, 95, 103, 151, 297, 373, 567, 583
MseI	TTAA	1 cut(s)	392
MspR9I	CCNGG	1 cut(s)	252
MvaI	CCWGG	1 cut(s)	252
MwoI	GCNNNNNNNGC	2 cut(s)	544, 553
NdeII	GATC	5 cut(s)	61, 72, 321, 520, 630
NlaIII	CATG	2 cut(s)	328, 527
NlaIV	GGNNCC	1 cut(s)	83
PagI	TCATGA	1 cut(s)	523
PfeI	GAWTC	6 cut(s)	20, 119, 179, 223, 351, 485
PflFI	GACNNNGTC	1 cut(s)	53
PkrI	GCNGC	1 cut(s)	558
Ple19I	CGATCG	1 cut(s)	64
PleI	GAGTC	2 cut(s)	298, 496
PpsI	GAGTC	2 cut(s)	298, 496
Psp6I	CCWGG	1 cut(s)	250
PspGI	CCWGG	1 cut(s)	250
PspN4I	GGNNCC	1 cut(s)	83
PsyI	GACNNNGTC	1 cut(s)	53
PvuI	CGATCG	1 cut(s)	64
SaqAI	TTAA	1 cut(s)	392
SatI	GCNGC	1 cut(s)	557
Sau3AI	GATC	5 cut(s)	61, 72, 321, 520, 630
SchI	GAGTC	2 cut(s)	299, 496
ScrFI	CCNGG	1 cut(s)	252
SetI	ASST	7 cut(s)	36, 43, 72, 95, 187, 316, 604
SfaNI	GCATC	2 cut(s)	350, 543
SfcI	CTRYAG	1 cut(s)	111
SmlI	CTYRAG	4 cut(s)	86, 137, 275, 415
SmoI	CTYRAG	4 cut(s)	86, 137, 275, 415
Sse9I	AATT	1 cut(s)	231
SsiI	CCGC	2 cut(s)	545, 557
SspMI	CTAG	3 cut(s)	38, 530, 612
StyD4I	CCNGG	1 cut(s)	250
TaaI	ACNGT	4 cut(s)	27, 115, 245, 626
TaiI	ACGT	1 cut(s)	36
TaqI	TCGA	3 cut(s)	60, 64, 75
TasI	AATT	1 cut(s)	231
TauI	GCSGC	1 cut(s)	559
TfiI	GAWTC	6 cut(s)	20, 119, 179, 223, 351, 485
Tru1I	TTAA	1 cut(s)	392
Tru9I	TTAA	1 cut(s)	392
TscAI	CASTG	1 cut(s)	405
TspDTI	ATGAA	4 cut(s)	285, 455, 498, 540
TspRI	CASTG	1 cut(s)	405
Tth111I	GACNNNGTC	1 cut(s)	53
XspI	CTAG	3 cut(s)	38, 530, 612

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.