Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0002461

Physical Location & Seq

Genomic Coordinates Forward (+)

26963896 .. 26971587

Gene Structure 7692 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0256900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1107 bp

ATGGCGACTGTTATGCAGAAAATCAAGGACATCGAAGATGAGATGGCTAGGACTCAAAAGAACAAGGCTACTGCCCATCACTTGGGTTTGCTGAAGGCTAAACTTGCAAAGTTAAGGAGAGACCTACTTGAGCCCACAACAAAAGGCGGTGGTGGTGCTGGTGAGGGTTTTGACGTCACTAAAAGTGGAGATGCAAGAGTTGGTTTGGTGGGTTTCCCTTCAGTTGGGAAATCTACTCTGCTGAATAAATTGACTGGGACTTTTTCAGAGGTTGCTTCCTATGAATTCACTACCTTAACCTGCATTCCAGGTGTGATTGTCTATCGAGGTGCAAAGATTCAGCTGTTGGATCTCCCTGGAATTATTGAGGGTGCGAAGGACGGAAAGGGTAGAGGAAGACAGGTTATCAGCACTGCTAGGACATGCAATTGCATATTAATTGTTCTAGATGCAATAAAGCCAATAACTCATAAACGTCTAATTGAGAAAGAGCTTGAGGGATTTGGCATAAGGTTAAACAAGGAACCACCTAACCTGACCTTCAGGAAGAAAGAGAAGGGTGGGATCAATTTCACTTCAACGGTTACCAACACACATTTGGATCTTGAAACTGTGAAGGCGATTTGTAGTGAATATAGAATTCACAATGCTGATATCACTCTTAGGTTTGATGCAACTGCCGATGACCTCATAGATGTAATTGAAGGCAGTAGGGTATACATGCCCTGCATCTATGCTGTGAACAAGATTGATCAGATTACTCTTGAAGAGCTTGAGATTTTGGATAAACTTCCTCACTACTGTCCAGTCAGTGCTCACCTAGAGTGGAACCTTGACGGTTTGCTGGAGAAGATATGGGAGTATCTCAATTTAACTCGCATATACACGAAACCTAAAGGGATGAATCCAGATTATGAAGACCCTGTGATCCTATCATCTAAGACAAGGACAGTTGAGGATTTCTGTGAGCGAATTCATAAAGATTTTATTAAACAATTCAAATATGCTCTGGTTTGGGGGTCTAGCGCGAAACACAAGCCCCAAAGAGTTGGAAAGGAGCATGTGCTCGAAGATGAGGATGTTGTTCAGATTATCAAAAAGGTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000156 GO:0000160 GO:0003674 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007154 GO:0007165 GO:0007623 GO:0008150 GO:0009719 GO:0009725 GO:0009735 GO:0009736 GO:0009755 GO:0009889 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0023052 GO:0031323 GO:0031326 GO:0032870 GO:0035556 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048511 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0060089 GO:0060255 GO:0065007 GO:0070887 GO:0071310 GO:0071368 GO:0071495 GO:0080090 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

Response_reg

Protein Analysis

368

Amino Acids

41.22

Weight (kDa)

8.49

Isoelectric Point (pI)

30.51

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MMR_HSR1	PF01926	66 - 177	1.9e-23	50S ribosome-binding GTPase
FeoB_N	PF02421	66 - 152	1.2e-10	Ferrous iron transport protein B
MMR_HSR1_Xtn	PF16897	186 - 291	5.7e-42	C-terminal region of MMR_HSR1 domain
TGS	PF02824	293 - 366	6.8e-22	TGS domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002461)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G07440 AT2G41310 AT3G57040 AT3G57040
fragaria_vesca	FvH4_6g25290 FvH4_7g02970
malus_domestica	MD02G1288300.v1.1 MD07G1038500.v1.1 MD12G1093500.v1.1 MD14G1086100.v1.1
prunus_persica	Prupe.2G034700_v2.0.a1 Prupe.7G041600_v2.0.a1
pyrus_communis	pycom12g07920 pycom14g07600
rosa_chinensis	RchiOBHm_Chr1g0323961 RchiOBHm_Chr1g0360681 RchiOBHm_Chr2g0125351
rosa_laevigata	RLG00000018858 RLG00000030239
rosa_multiflora	Rmu_sc0002529.1_g000022 Rmu_sc0002631.1_g000008 Rmu_sc0006175.1_g000025 Rmu_sc0006399.1_g000002
rosa_roxburghii	Rroxscaffold_2G00118090 Rroxscaffold_4G00326040
rosa_rugosa	Rorug01G0040800 Rorug02G0256900
rosa_samantha	Rh1AG058100 Rh1AG058700 Rh1BG049200 Rh1BG049700 Rh1CG060700 Rh1DG064600 Rh2AG315100 Rh2BG323200 Rh2CG305500 Rh2DG341800
rosa_wichuraiana	Rw0G023530 Rw1G004980 Rw1G005010 Rw2G025470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	177
Acc36I	ACCTGC	1 cut(s)	308
AccB7I	CCANNNNNTGG	1 cut(s)	82
AccI	GTMKAC	1 cut(s)	717
AccII	CGCG	1 cut(s)	1028
AciI	CCGC	1 cut(s)	147
AclWI	GGATC	4 cut(s)	357, 572, 609, 922
AcsI	RAATTY	3 cut(s)	284, 639, 972
AcuI	CTGAAG	3 cut(s)	113, 204, 526
AcyI	GRCGYC	1 cut(s)	174
AfiI	CCNNNNNNNGG	2 cut(s)	82, 224
AgsI	TTSAA	5 cut(s)	579, 608, 704, 767, 1000
AjnI	CCWGG	2 cut(s)	307, 355
AluBI	AGCT	3 cut(s)	343, 493, 772
AluI	AGCT	3 cut(s)	343, 493, 772
Alw21I	GWGCWC	2 cut(s)	817, 1068
Alw26I	GTCTC	1 cut(s)	114
AlwI	GGATC	4 cut(s)	357, 572, 609, 922
ApoI	RAATTY	3 cut(s)	284, 639, 972
AseI	ATTAAT	1 cut(s)	437
AspLEI	GCGC	1 cut(s)	1028
AsuHPI	GGTGA	2 cut(s)	173, 809
BanII	GRGCYC	1 cut(s)	135
BbsI	GAAGAC	2 cut(s)	403, 924
Bbv12I	GWGCWC	2 cut(s)	817, 1068
BccI	CCATC	2 cut(s)	37, 84
BcgI	CGANNNNNNTGC	1 cut(s)	29
BciT130I	CCWGG	2 cut(s)	309, 357
BclI	TGATCA	1 cut(s)	751
BcoDI	GTCTC	1 cut(s)	114
BfaI	CTAG	5 cut(s)	48, 417, 446, 821, 1023
BfuAI	ACCTGC	1 cut(s)	308
Bme1390I	CCNGG	2 cut(s)	309, 357
BmiI	GGNNCC	2 cut(s)	525, 830
BmrFI	CCNGG	2 cut(s)	309, 357
BmrI	ACTGGG	1 cut(s)	264
BmsI	GCATC	4 cut(s)	181, 439, 661, 738
BmuI	ACTGGG	1 cut(s)	264
BpiI	GAAGAC	2 cut(s)	403, 924
BpmI	CTGGAG	1 cut(s)	866
BpuEI	CTTGAG	3 cut(s)	149, 515, 794
BsaHI	GRCGYC	1 cut(s)	174
BsaI	GGTCTC	1 cut(s)	114
BsaJI	CCNNGG	1 cut(s)	355
Bsc4I	CCNNNNNNNGG	2 cut(s)	82, 224
Bse1I	ACTGG	2 cut(s)	259, 806
BseBI	CCWGG	2 cut(s)	309, 357
BseDI	CCNNGG	1 cut(s)	355
BseGI	GGATG	2 cut(s)	906, 1084
BseLI	CCNNNNNNNGG	2 cut(s)	82, 224
BseNI	ACTGG	2 cut(s)	259, 806
Bsh1236I	CGCG	1 cut(s)	1028
BsiHKAI	GWGCWC	2 cut(s)	817, 1068
BslFI	GGGAC	1 cut(s)	271
BslI	CCNNNNNNNGG	2 cut(s)	82, 224
BsmAI	GTCTC	1 cut(s)	114
BsmFI	GGGAC	1 cut(s)	271
BsmI	GAATGC	1 cut(s)	303
Bso31I	GGTCTC	1 cut(s)	114
Bsp1286I	GDGCHC	3 cut(s)	135, 817, 1068
Bsp143I	GATC	5 cut(s)	349, 564, 601, 751, 927
BspACI	CCGC	1 cut(s)	147
BspFNI	CGCG	1 cut(s)	1028
BspLI	GGNNCC	2 cut(s)	525, 830
BspMI	ACCTGC	1 cut(s)	308
BspPI	GGATC	4 cut(s)	357, 572, 609, 922
BspQI	GCTCTTC	1 cut(s)	762
BspTNI	GGTCTC	1 cut(s)	114
BsrI	ACTGG	2 cut(s)	259, 806
BssECI	CCNNGG	1 cut(s)	355
BssMI	GATC	5 cut(s)	349, 564, 601, 751, 927
BssNAI	GTATAC	1 cut(s)	718
BssNI	GRCGYC	1 cut(s)	174
Bst1107I	GTATAC	1 cut(s)	718
Bst2UI	CCWGG	2 cut(s)	309, 357
Bst4CI	ACNGT	6 cut(s)	10, 583, 613, 803, 839, 952
Bst6I	CTCTTC	1 cut(s)	762
BstACI	GRCGYC	1 cut(s)	174
BstDEI	CTNAG	2 cut(s)	662, 939
BstEII	GGTNACC	1 cut(s)	583
BstF5I	GGATG	2 cut(s)	906, 1084
BstFNI	CGCG	1 cut(s)	1028
BstHHI	GCGC	1 cut(s)	1028
BstKTI	GATC	5 cut(s)	352, 567, 604, 754, 930
BstMAI	GTCTC	1 cut(s)	114
BstMBI	GATC	5 cut(s)	349, 564, 601, 751, 927
BstMWI	GCNNNNNNNGC	1 cut(s)	104
BstNI	CCWGG	2 cut(s)	309, 357
BstNSI	RCATGY	3 cut(s)	426, 724, 1064
BstPI	GGTNACC	1 cut(s)	583
BstSCI	CCNGG	2 cut(s)	307, 355
BstUI	CGCG	1 cut(s)	1028
BstV2I	GAAGAC	2 cut(s)	403, 924
BstX2I	RGATCY	2 cut(s)	349, 601
BstXI	CCANNNNNNTGG	1 cut(s)	1049
BstYI	RGATCY	2 cut(s)	349, 601
BstZ17I	GTATAC	1 cut(s)	718
BtsCI	GGATG	2 cut(s)	906, 1084
BtsI	GCAGTG	1 cut(s)	411
BtsIMutI	CAGTG	2 cut(s)	411, 817
BveI	ACCTGC	1 cut(s)	308
CfoI	GCGC	1 cut(s)	1028
CviAII	CATG	3 cut(s)	423, 721, 1061
CviJI	RGCY	9 cut(s)	47, 68, 98, 133, 343, 460, 493, 772, 1039
CviKI_1	RGCY	9 cut(s)	47, 68, 98, 133, 343, 460, 493, 772, 1039
DdeI	CTNAG	2 cut(s)	662, 939
DpnI	GATC	5 cut(s)	351, 566, 603, 753, 929
DpnII	GATC	5 cut(s)	349, 564, 601, 751, 927
Eam1104I	CTCTTC	1 cut(s)	762
EarI	CTCTTC	1 cut(s)	762
Eco24I	GRGCYC	1 cut(s)	135
Eco31I	GGTCTC	1 cut(s)	114
Eco32I	GATATC	1 cut(s)	655
Eco57I	CTGAAG	3 cut(s)	113, 204, 526
Eco91I	GGTNACC	1 cut(s)	583
EcoO65I	GGTNACC	1 cut(s)	583
EcoRI	GAATTC	3 cut(s)	284, 639, 972
EcoRII	CCWGG	2 cut(s)	307, 355
EcoRV	GATATC	1 cut(s)	655
EcoT38I	GRGCYC	1 cut(s)	135
FaeI	CATG	3 cut(s)	426, 724, 1064
FaqI	GGGAC	1 cut(s)	271
FatI	CATG	3 cut(s)	422, 720, 1060
FbaI	TGATCA	1 cut(s)	751
FblI	GTMKAC	1 cut(s)	717
FokI	GGATG	2 cut(s)	913, 1091
FriOI	GRGCYC	1 cut(s)	135
FspBI	CTAG	5 cut(s)	48, 417, 446, 821, 1023
GlaI	GCGC	1 cut(s)	1027
GsuI	CTGGAG	1 cut(s)	866
HhaI	GCGC	1 cut(s)	1028
Hin1I	GRCGYC	1 cut(s)	174
Hin1II	CATG	3 cut(s)	426, 724, 1064
Hin6I	GCGC	1 cut(s)	1026
HinP1I	GCGC	1 cut(s)	1026
HinfI	GANTC	3 cut(s)	52, 337, 904
HphI	GGTGA	2 cut(s)	173, 809
Hpy166II	GTNNAC	2 cut(s)	718, 742
Hpy188I	TCNGA	3 cut(s)	268, 756, 1089
Hpy188III	TCNNGA	5 cut(s)	446, 544, 605, 764, 908
Hpy8I	GTNNAC	2 cut(s)	718, 742
HpyAV	CCTTC	7 cut(s)	88, 228, 370, 550, 550, 610, 698
HpyCH4III	ACNGT	6 cut(s)	10, 583, 613, 803, 839, 952
HpyCH4IV	ACGT	2 cut(s)	174, 475
HpyF10VI	GCNNNNNNNGC	1 cut(s)	104
HpyF3I	CTNAG	2 cut(s)	662, 939
HpySE526I	ACGT	2 cut(s)	174, 475
Hsp92I	GRCGYC	1 cut(s)	174
Hsp92II	CATG	3 cut(s)	426, 724, 1064
HspAI	GCGC	1 cut(s)	1026
Ksp22I	TGATCA	1 cut(s)	751
Kzo9I	GATC	5 cut(s)	349, 564, 601, 751, 927
LguI	GCTCTTC	1 cut(s)	762
LmnI	GCTCC	1 cut(s)	1057
LweI	GCATC	4 cut(s)	181, 439, 661, 738
MaeI	CTAG	5 cut(s)	48, 417, 446, 821, 1023
MaeII	ACGT	2 cut(s)	174, 475
MaeIII	GTNAC	2 cut(s)	175, 583
MalI	GATC	5 cut(s)	351, 566, 603, 753, 929
MboI	GATC	5 cut(s)	349, 564, 601, 751, 927
MboII	GAAGA	7 cut(s)	47, 408, 559, 779, 862, 929, 1082
MfeI	CAATTG	1 cut(s)	427
MflI	RGATCY	2 cut(s)	349, 601
MhlI	GDGCHC	3 cut(s)	135, 817, 1068
MlyI	GAGTC	1 cut(s)	46
MmeI	TCCRAC	2 cut(s)	327, 1030
MseI	TTAA	6 cut(s)	113, 296, 437, 515, 872, 990
MspA1I	CMGCKG	1 cut(s)	343
MspR9I	CCNGG	2 cut(s)	309, 357
MunI	CAATTG	1 cut(s)	427
Mva1269I	GAATGC	1 cut(s)	303
MvaI	CCWGG	2 cut(s)	309, 357
MvnI	CGCG	1 cut(s)	1028
MwoI	GCNNNNNNNGC	1 cut(s)	104
NdeII	GATC	5 cut(s)	349, 564, 601, 751, 927
NlaIII	CATG	3 cut(s)	426, 724, 1064
NlaIV	GGNNCC	2 cut(s)	525, 830
NmuCI	GTSAC	1 cut(s)	175
NspI	RCATGY	3 cut(s)	426, 724, 1064
PciSI	GCTCTTC	1 cut(s)	762
PctI	GAATGC	1 cut(s)	303
PfeI	GAWTC	2 cut(s)	337, 904
PflMI	CCANNNNNTGG	1 cut(s)	82
PleI	GAGTC	1 cut(s)	46
PpsI	GAGTC	1 cut(s)	46
PshBI	ATTAAT	1 cut(s)	437
Psp6I	CCWGG	2 cut(s)	307, 355
PspEI	GGTNACC	1 cut(s)	583
PspGI	CCWGG	2 cut(s)	307, 355
PspN4I	GGNNCC	2 cut(s)	525, 830
PsuI	RGATCY	2 cut(s)	349, 601
PvuII	CAGCTG	1 cut(s)	343
SapI	GCTCTTC	1 cut(s)	762
SaqAI	TTAA	6 cut(s)	113, 296, 437, 515, 872, 990
Sau3AI	GATC	5 cut(s)	349, 564, 601, 751, 927
SchI	GAGTC	1 cut(s)	46
ScrFI	CCNGG	2 cut(s)	309, 357
SduI	GDGCHC	3 cut(s)	135, 817, 1068
SfaNI	GCATC	4 cut(s)	181, 439, 661, 738
SmlI	CTYRAG	3 cut(s)	128, 494, 773
SmoI	CTYRAG	3 cut(s)	128, 494, 773
SsiI	CCGC	1 cut(s)	147
SspMI	CTAG	5 cut(s)	48, 417, 446, 821, 1023
StyD4I	CCNGG	2 cut(s)	307, 355
TaaI	ACNGT	6 cut(s)	10, 583, 613, 803, 839, 952
TaiI	ACGT	2 cut(s)	177, 478
TaqI	TCGA	3 cut(s)	33, 325, 1068
TfiI	GAWTC	2 cut(s)	337, 904
Tru1I	TTAA	6 cut(s)	113, 296, 437, 515, 872, 990
Tru9I	TTAA	6 cut(s)	113, 296, 437, 515, 872, 990
TscAI	CASTG	2 cut(s)	418, 817
TseFI	GTSAC	1 cut(s)	175
Tsp45I	GTSAC	1 cut(s)	175
TspDTI	ATGAA	4 cut(s)	297, 917, 930, 965
TspGWI	ACGGA	1 cut(s)	396
TspRI	CASTG	2 cut(s)	418, 817
Van91I	CCANNNNNTGG	1 cut(s)	82
VspI	ATTAAT	1 cut(s)	437
XapI	RAATTY	3 cut(s)	284, 639, 972
XbaI	TCTAGA	1 cut(s)	445
XceI	RCATGY	3 cut(s)	426, 724, 1064
XcmI	CCANNNNNNNNNTGG	1 cut(s)	595
XmiI	GTMKAC	1 cut(s)	717
XspI	CTAG	5 cut(s)	48, 417, 446, 821, 1023
ZraI	GACGTC	1 cut(s)	175

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.