Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr1

Orthogroup ID

OG0002461

Physical Location & Seq

Genomic Coordinates Forward (+)

9515375 .. 9517413

Gene Structure 2039 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw1G004980.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 549 bp

ATGAGAGGCCAGTTTCATGTTCTGGCTGTTGATGATAGCATCATTGACAGAAAGTTGATTGAGAGACTTCTCAAGACTTCTTCTTATCAAGTTACTGCTGTAGATTCTGGTATTAAGGCTTTAGAATTTTTGGGTTTGAATGATGAAGACGATCAAAGTGATATTGCAGAAGCTCCTTCTGTGTCTCCAAACAATCATCATCAGGATGTAGATGTGAATTTGATCATTACAGATTACTGCATGCCAGGAATGACAGGCTACGATCTCCTCAGAAAGATTAAGGAATCCAAGTCTCTTAAAGACATACCAGTTGTTATCATGTCCTCAGAGAATGAACCATCAAGGATCAACAGATGCTTAGAGGAAGGAGCAGAGGAGTTCTTTCTGAAACCAGTAAAATTGTCAGATGTCAACAAGCTTAGACCCCATATGATGAAGGGTACAAGTATAGAAGACGAAGGCAACATCAACGAGGGAAAGGCCATGGAAGAAATCCAAACACCTGAGAGAACTAGAACAATATATAATGGCTTTGATGTGCTTTCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000156 GO:0000160 GO:0003674 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007154 GO:0007165 GO:0007623 GO:0008150 GO:0009719 GO:0009725 GO:0009735 GO:0009736 GO:0009755 GO:0009889 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0023052 GO:0031323 GO:0031326 GO:0032870 GO:0035556 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048511 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0060089 GO:0060255 GO:0065007 GO:0070887 GO:0071310 GO:0071368 GO:0071495 GO:0080090 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

Response_reg

Protein Analysis

182

Amino Acids

20.5

Weight (kDa)

4.76

Isoelectric Point (pI)

45.6

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Response_reg	PF00072	7 - 137	6.6e-18	Response regulator receiver domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0002461)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G07440 AT2G41310 AT3G57040 AT3G57040
fragaria_vesca	FvH4_6g25290 FvH4_7g02970
malus_domestica	MD02G1288300.v1.1 MD07G1038500.v1.1 MD12G1093500.v1.1 MD14G1086100.v1.1
prunus_persica	Prupe.2G034700_v2.0.a1 Prupe.7G041600_v2.0.a1
pyrus_communis	pycom12g07920 pycom14g07600
rosa_chinensis	RchiOBHm_Chr1g0323961 RchiOBHm_Chr1g0360681 RchiOBHm_Chr2g0125351
rosa_laevigata	RLG00000018858 RLG00000030239
rosa_multiflora	Rmu_sc0002529.1_g000022 Rmu_sc0002631.1_g000008 Rmu_sc0006175.1_g000025 Rmu_sc0006399.1_g000002
rosa_roxburghii	Rroxscaffold_2G00118090 Rroxscaffold_4G00326040
rosa_rugosa	Rorug01G0040800 Rorug02G0256900
rosa_samantha	Rh1AG058100 Rh1AG058700 Rh1BG049200 Rh1BG049700 Rh1CG060700 Rh1DG064600 Rh2AG315100 Rh2BG323200 Rh2CG305500 Rh2DG341800
rosa_wichuraiana	Rw0G023530 Rw1G004980 Rw1G005010 Rw2G025470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	353
AcsI	RAATTY	2 cut(s)	125, 217
AfaI	GTAC	1 cut(s)	442
AgsI	TTSAA	1 cut(s)	139
AjnI	CCWGG	1 cut(s)	244
AluBI	AGCT	2 cut(s)	173, 418
AluI	AGCT	2 cut(s)	173, 418
Alw26I	GTCTC	3 cut(s)	58, 189, 297
AlwI	GGATC	1 cut(s)	353
AoxI	GGCC	2 cut(s)	7, 480
ApoI	RAATTY	2 cut(s)	125, 217
BbsI	GAAGAC	2 cut(s)	153, 459
BccI	CCATC	1 cut(s)	346
BciT130I	CCWGG	1 cut(s)	246
BclI	TGATCA	1 cut(s)	222
BcoDI	GTCTC	3 cut(s)	58, 189, 297
BfaI	CTAG	1 cut(s)	513
BfmI	CTRYAG	1 cut(s)	99
Bme1390I	CCNGG	1 cut(s)	246
BmrFI	CCNGG	1 cut(s)	246
BmsI	GCATC	2 cut(s)	48, 344
BpiI	GAAGAC	2 cut(s)	153, 459
BpuEI	CTTGAG	1 cut(s)	56
BsaJI	CCNNGG	1 cut(s)	483
Bse1I	ACTGG	3 cut(s)	10, 308, 392
BseBI	CCWGG	1 cut(s)	246
BseDI	CCNNGG	1 cut(s)	483
BseGI	GGATG	1 cut(s)	211
BseMII	CTCAG	3 cut(s)	283, 339, 495
BseNI	ACTGG	3 cut(s)	10, 308, 392
BseRI	GAGGAG	2 cut(s)	257, 389
BshFI	GGCC	2 cut(s)	9, 482
BsmAI	GTCTC	3 cut(s)	58, 189, 297
BsnI	GGCC	2 cut(s)	9, 482
Bsp143I	GATC	4 cut(s)	151, 222, 262, 345
Bsp19I	CCATGG	1 cut(s)	483
BspANI	GGCC	2 cut(s)	9, 482
BspCNI	CTCAG	3 cut(s)	282, 338, 496
BspHI	TCATGA	1 cut(s)	545
BspPI	GGATC	1 cut(s)	353
BsrI	ACTGG	3 cut(s)	10, 308, 392
BssECI	CCNNGG	1 cut(s)	483
BssMI	GATC	4 cut(s)	151, 222, 262, 345
BssT1I	CCWWGG	1 cut(s)	483
Bst2UI	CCWGG	1 cut(s)	246
BstC8I	GCNNGC	1 cut(s)	242
BstDEI	CTNAG	5 cut(s)	269, 325, 358, 419, 504
BstDSI	CCRYGG	1 cut(s)	483
BstF5I	GGATG	1 cut(s)	211
BstKTI	GATC	4 cut(s)	154, 225, 265, 348
BstMAI	GTCTC	3 cut(s)	58, 189, 297
BstMBI	GATC	4 cut(s)	151, 222, 262, 345
BstNI	CCWGG	1 cut(s)	246
BstNSI	RCATGY	1 cut(s)	244
BstSCI	CCNGG	1 cut(s)	244
BstSFI	CTRYAG	1 cut(s)	99
BstV2I	GAAGAC	2 cut(s)	153, 459
BsuRI	GGCC	2 cut(s)	9, 482
BtgI	CCRYGG	1 cut(s)	483
BtsCI	GGATG	1 cut(s)	211
Cac8I	GCNNGC	1 cut(s)	242
CciI	TCATGA	1 cut(s)	545
Csp6I	GTAC	1 cut(s)	441
CviAII	CATG	5 cut(s)	17, 241, 319, 484, 546
CviJI	RGCY	8 cut(s)	9, 26, 119, 173, 258, 418, 482, 531
CviKI_1	RGCY	8 cut(s)	9, 26, 119, 173, 258, 418, 482, 531
CviQI	GTAC	1 cut(s)	441
DdeI	CTNAG	5 cut(s)	269, 325, 358, 419, 504
DpnI	GATC	4 cut(s)	153, 224, 264, 347
DpnII	GATC	4 cut(s)	151, 222, 262, 345
Eco130I	CCWWGG	1 cut(s)	483
EcoRII	CCWGG	1 cut(s)	244
EcoT14I	CCWWGG	1 cut(s)	483
ErhI	CCWWGG	1 cut(s)	483
FaeI	CATG	5 cut(s)	20, 244, 322, 487, 549
FatI	CATG	5 cut(s)	16, 240, 318, 483, 545
FauNDI	CATATG	1 cut(s)	429
FbaI	TGATCA	1 cut(s)	222
FokI	GGATG	1 cut(s)	218
FspBI	CTAG	1 cut(s)	513
HaeIII	GGCC	2 cut(s)	9, 482
Hin1II	CATG	5 cut(s)	20, 244, 322, 487, 549
HincII	GTYRAC	1 cut(s)	412
HindII	GTYRAC	1 cut(s)	412
HindIII	AAGCTT	1 cut(s)	416
HinfI	GANTC	2 cut(s)	104, 284
Hpy166II	GTNNAC	1 cut(s)	412
Hpy188I	TCNGA	4 cut(s)	272, 328, 387, 406
Hpy188III	TCNNGA	3 cut(s)	73, 203, 546
Hpy8I	GTNNAC	1 cut(s)	412
HpyAV	CCTTC	4 cut(s)	186, 359, 430, 452
HpyCH4V	TGCA	2 cut(s)	167, 240
HpyF3I	CTNAG	5 cut(s)	269, 325, 358, 419, 504
Hsp92II	CATG	5 cut(s)	20, 244, 322, 487, 549
Ksp22I	TGATCA	1 cut(s)	222
Kzo9I	GATC	4 cut(s)	151, 222, 262, 345
LmnI	GCTCC	2 cut(s)	178, 368
LweI	GCATC	2 cut(s)	48, 344
MaeI	CTAG	1 cut(s)	513
MaeIII	GTNAC	1 cut(s)	91
MalI	GATC	4 cut(s)	153, 224, 264, 347
MboI	GATC	4 cut(s)	151, 222, 262, 345
MboII	GAAGA	4 cut(s)	72, 158, 464, 500
MluCI	AATT	3 cut(s)	125, 217, 398
MnlI	CCTC	5 cut(s)	278, 334, 355, 367, 466
MseI	TTAA	3 cut(s)	114, 279, 297
MslI	CAYNNNNRTG	1 cut(s)	204
MspR9I	CCNGG	1 cut(s)	246
MvaI	CCWGG	1 cut(s)	246
NcoI	CCATGG	1 cut(s)	483
NdeI	CATATG	1 cut(s)	429
NdeII	GATC	4 cut(s)	151, 222, 262, 345
NlaIII	CATG	5 cut(s)	20, 244, 322, 487, 549
NspI	RCATGY	1 cut(s)	244
PaeI	GCATGC	1 cut(s)	244
PagI	TCATGA	1 cut(s)	545
PfeI	GAWTC	2 cut(s)	104, 284
Psp6I	CCWGG	1 cut(s)	244
PspGI	CCWGG	1 cut(s)	244
RsaI	GTAC	1 cut(s)	442
RsaNI	GTAC	1 cut(s)	441
RseI	CAYNNNNRTG	1 cut(s)	204
SaqAI	TTAA	3 cut(s)	114, 279, 297
Sau3AI	GATC	4 cut(s)	151, 222, 262, 345
ScrFI	CCNGG	1 cut(s)	246
SetI	ASST	3 cut(s)	175, 420, 505
SfaNI	GCATC	2 cut(s)	48, 344
SfcI	CTRYAG	1 cut(s)	99
SmiMI	CAYNNNNRTG	1 cut(s)	204
SmlI	CTYRAG	1 cut(s)	71
SmoI	CTYRAG	1 cut(s)	71
SphI	GCATGC	1 cut(s)	244
Sse9I	AATT	3 cut(s)	125, 217, 398
SspMI	CTAG	1 cut(s)	513
StyD4I	CCNGG	1 cut(s)	244
StyI	CCWWGG	1 cut(s)	483
TasI	AATT	3 cut(s)	125, 217, 398
TfiI	GAWTC	2 cut(s)	104, 284
Tru1I	TTAA	3 cut(s)	114, 279, 297
Tru9I	TTAA	3 cut(s)	114, 279, 297
TspDTI	ATGAA	5 cut(s)	5, 159, 348, 449, 534
XapI	RAATTY	2 cut(s)	125, 217
XceI	RCATGY	1 cut(s)	244
XspI	CTAG	1 cut(s)	513

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.