Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0002461

Physical Location & Seq

Genomic Coordinates Reverse (-)

44414807 .. 44417924

Gene Structure 3118 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG341800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 639 bp

ATGCGTGATCAATTTAAATGTCGACGACGGCGCGTTTCCGTTACTACGGTTGATTCTGGTAGTAAGGCTCTAGAGTTTCTGGGTTTGTATGAGGATGACCAAACCAATCCTGACTCACCTTCAGTTTCCCCAAACAATCAACAGGAAGTGGAAGTGAATCTAATTATCACAGACTACTGTATGCCAGGCATGACAGGATATGATTTGCTCAGGAAAATCAAGGAATCTTCTTCACTCAAGAACATACCGGTTGTGATAATGTCATCCGAGAATGTGCCTTCAAGAATAAATAGGTGTTTGGAACAAGGGGCAGAAGAGTTTTTCTTAAAGCCAGTAAGATTGTCAGACTTGAATAGGCTTAGGCCTCATATTATAAAAACCAAGTCTAAGGATCAAAACCAAGAAAAGCCAAGAACTCATGAAGAAGAAGAAGCAAGTCAAAAATTGGAAATGTCATCAAAAAAGAGTCAAAAATTGGAAAGCTCGGAGGTTAAGCAGGAACAACAAGAGCTACTACATCATCAACTACAGTTACAACAATCACAGCCACCAAATAGTAACAAGCGCAAGACCATGGAAGAGGGGCTCTCACCTGATAGAACTAGACCCAGATACAGTGGCATCACCACTGCCGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000156 GO:0000160 GO:0003674 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007154 GO:0007165 GO:0007623 GO:0008150 GO:0009719 GO:0009725 GO:0009735 GO:0009736 GO:0009755 GO:0009889 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0023052 GO:0031323 GO:0031326 GO:0032870 GO:0035556 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048511 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0060089 GO:0060255 GO:0065007 GO:0070887 GO:0071310 GO:0071368 GO:0071495 GO:0080090 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

Response_reg

Protein Analysis

212

Amino Acids

24.38

Weight (kDa)

8.37

Isoelectric Point (pI)

75.42

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Response_reg	PF00072	48 - 117	1.9e-14	Response regulator receiver domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002461)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G07440 AT2G41310 AT3G57040 AT3G57040
fragaria_vesca	FvH4_6g25290 FvH4_7g02970
malus_domestica	MD02G1288300.v1.1 MD07G1038500.v1.1 MD12G1093500.v1.1 MD14G1086100.v1.1
prunus_persica	Prupe.2G034700_v2.0.a1 Prupe.7G041600_v2.0.a1
pyrus_communis	pycom12g07920 pycom14g07600
rosa_chinensis	RchiOBHm_Chr1g0323961 RchiOBHm_Chr1g0360681 RchiOBHm_Chr2g0125351
rosa_laevigata	RLG00000018858 RLG00000030239
rosa_multiflora	Rmu_sc0002529.1_g000022 Rmu_sc0002631.1_g000008 Rmu_sc0006175.1_g000025 Rmu_sc0006399.1_g000002
rosa_roxburghii	Rroxscaffold_2G00118090 Rroxscaffold_4G00326040
rosa_rugosa	Rorug01G0040800 Rorug02G0256900
rosa_samantha	Rh1AG058100 Rh1AG058700 Rh1BG049200 Rh1BG049700 Rh1CG060700 Rh1DG064600 Rh2AG315100 Rh2BG323200 Rh2CG305500 Rh2DG341800
rosa_wichuraiana	Rw0G023530 Rw1G004980 Rw1G005010 Rw2G025470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	374
AccI	GTMKAC	1 cut(s)	22
AccII	CGCG	1 cut(s)	33
AclWI	GGATC	1 cut(s)	399
AcuI	CTGAAG	1 cut(s)	105
AgeI	ACCGGT	1 cut(s)	247
AgsI	TTSAA	2 cut(s)	282, 352
AjnI	CCWGG	1 cut(s)	184
AluBI	AGCT	2 cut(s)	483, 511
AluI	AGCT	2 cut(s)	483, 511
AlwI	GGATC	1 cut(s)	399
AoxI	GGCC	1 cut(s)	362
AsiGI	ACCGGT	1 cut(s)	247
AspLEI	GCGC	2 cut(s)	33, 567
AsuHPI	GGTGA	3 cut(s)	108, 582, 616
BanII	GRGCYC	1 cut(s)	588
BceAI	ACGGC	2 cut(s)	44, 617
BciT130I	CCWGG	1 cut(s)	186
BclI	TGATCA	1 cut(s)	7
BfaI	CTAG	2 cut(s)	71, 603
BfmI	CTRYAG	1 cut(s)	527
Bme1390I	CCNGG	1 cut(s)	186
BmrFI	CCNGG	1 cut(s)	186
BmsI	GCATC	1 cut(s)	630
BplI	GAGNNNNNCTC	2 cut(s)	572, 604
Bpu10I	CCTNAGC	2 cut(s)	209, 359
BpuEI	CTTGAG	1 cut(s)	221
BsaJI	CCNNGG	1 cut(s)	573
BsaWI	WCCGGW	1 cut(s)	247
Bse118I	RCCGGY	1 cut(s)	247
Bse1I	ACTGG	1 cut(s)	332
BseBI	CCWGG	1 cut(s)	186
BseDI	CCNNGG	1 cut(s)	573
BseGI	GGATG	2 cut(s)	100, 263
BseMII	CTCAG	1 cut(s)	223
BseNI	ACTGG	1 cut(s)	332
Bsh1236I	CGCG	1 cut(s)	33
BshFI	GGCC	1 cut(s)	364
BshTI	ACCGGT	1 cut(s)	247
BsiSI	CCGG	1 cut(s)	248
BsnI	GGCC	1 cut(s)	364
Bsp1286I	GDGCHC	1 cut(s)	588
Bsp143I	GATC	2 cut(s)	7, 391
Bsp19I	CCATGG	1 cut(s)	573
BspANI	GGCC	1 cut(s)	364
BspCNI	CTCAG	1 cut(s)	222
BspFNI	CGCG	1 cut(s)	33
BspHI	TCATGA	1 cut(s)	418
BspPI	GGATC	1 cut(s)	399
BsrFI	RCCGGY	1 cut(s)	247
BsrI	ACTGG	1 cut(s)	332
BssAI	RCCGGY	1 cut(s)	247
BssECI	CCNNGG	1 cut(s)	573
BssMI	GATC	2 cut(s)	7, 391
BssT1I	CCWWGG	1 cut(s)	573
Bst2UI	CCWGG	1 cut(s)	186
Bst4CI	ACNGT	4 cut(s)	49, 179, 531, 617
Bst6I	CTCTTC	2 cut(s)	309, 573
BstDEI	CTNAG	3 cut(s)	209, 359, 387
BstDSI	CCRYGG	1 cut(s)	573
BstF5I	GGATG	2 cut(s)	100, 263
BstFNI	CGCG	1 cut(s)	33
BstHHI	GCGC	2 cut(s)	33, 567
BstKTI	GATC	2 cut(s)	10, 394
BstMBI	GATC	2 cut(s)	7, 391
BstNI	CCWGG	1 cut(s)	186
BstSCI	CCNGG	1 cut(s)	184
BstSFI	CTRYAG	1 cut(s)	527
BstUI	CGCG	1 cut(s)	33
BsuRI	GGCC	1 cut(s)	364
BtgI	CCRYGG	1 cut(s)	573
BtsCI	GGATG	2 cut(s)	100, 263
BtsI	GCAGTG	1 cut(s)	627
BtsIMutI	CAGTG	2 cut(s)	622, 627
CciI	TCATGA	1 cut(s)	418
CfoI	GCGC	2 cut(s)	33, 567
Cfr10I	RCCGGY	1 cut(s)	247
CspAI	ACCGGT	1 cut(s)	247
CviAII	CATG	3 cut(s)	190, 419, 574
CviJI	RGCY	9 cut(s)	68, 331, 358, 364, 409, 483, 511, 547, 586
CviKI_1	RGCY	9 cut(s)	68, 331, 358, 364, 409, 483, 511, 547, 586
DdeI	CTNAG	3 cut(s)	209, 359, 387
DpnI	GATC	2 cut(s)	9, 393
DpnII	GATC	2 cut(s)	7, 391
DraI	TTTAAA	1 cut(s)	16
Eam1104I	CTCTTC	2 cut(s)	309, 573
EarI	CTCTTC	2 cut(s)	309, 573
Eco130I	CCWWGG	1 cut(s)	573
Eco147I	AGGCCT	1 cut(s)	364
Eco24I	GRGCYC	1 cut(s)	588
Eco57I	CTGAAG	1 cut(s)	105
EcoRII	CCWGG	1 cut(s)	184
EcoT14I	CCWWGG	1 cut(s)	573
EcoT38I	GRGCYC	1 cut(s)	588
ErhI	CCWWGG	1 cut(s)	573
FaeI	CATG	3 cut(s)	193, 422, 577
FaiI	YATR	9 cut(s)	90, 182, 191, 201, 245, 369, 374, 420, 575
FatI	CATG	3 cut(s)	189, 418, 573
FbaI	TGATCA	1 cut(s)	7
FblI	GTMKAC	1 cut(s)	22
FokI	GGATG	2 cut(s)	107, 250
FriOI	GRGCYC	1 cut(s)	588
FspBI	CTAG	2 cut(s)	71, 603
GlaI	GCGC	2 cut(s)	32, 566
HaeIII	GGCC	1 cut(s)	364
HapII	CCGG	1 cut(s)	248
HhaI	GCGC	2 cut(s)	33, 567
Hin1II	CATG	3 cut(s)	193, 422, 577
Hin6I	GCGC	2 cut(s)	31, 565
HinP1I	GCGC	2 cut(s)	31, 565
HincII	GTYRAC	1 cut(s)	23
HindII	GTYRAC	1 cut(s)	23
HinfI	GANTC	5 cut(s)	53, 113, 157, 224, 466
HpaII	CCGG	1 cut(s)	248
HphI	GGTGA	3 cut(s)	108, 582, 616
Hpy166II	GTNNAC	1 cut(s)	23
Hpy188I	TCNGA	3 cut(s)	268, 346, 487
Hpy188III	TCNNGA	6 cut(s)	71, 110, 211, 238, 282, 419
Hpy8I	GTNNAC	1 cut(s)	23
Hpy99I	CGWCG	2 cut(s)	27, 30
HpyAV	CCTTC	2 cut(s)	129, 288
HpyCH4III	ACNGT	4 cut(s)	49, 179, 531, 617
HpyF3I	CTNAG	3 cut(s)	209, 359, 387
Hsp92II	CATG	3 cut(s)	193, 422, 577
HspAI	GCGC	2 cut(s)	31, 565
Ksp22I	TGATCA	1 cut(s)	7
Kzo9I	GATC	2 cut(s)	7, 391
LweI	GCATC	1 cut(s)	630
MaeI	CTAG	2 cut(s)	71, 603
MaeIII	GTNAC	3 cut(s)	40, 531, 557
MalI	GATC	2 cut(s)	9, 393
MboI	GATC	2 cut(s)	7, 391
MboII	GAAGA	7 cut(s)	219, 222, 326, 434, 437, 440, 590
MhlI	GDGCHC	1 cut(s)	588
MluCI	AATT	4 cut(s)	11, 162, 443, 473
MlyI	GAGTC	2 cut(s)	107, 475
MnlI	CCTC	4 cut(s)	85, 375, 481, 574
MseI	TTAA	3 cut(s)	15, 326, 492
MspI	CCGG	1 cut(s)	248
MspR9I	CCNGG	1 cut(s)	186
MvaI	CCWGG	1 cut(s)	186
MvnI	CGCG	1 cut(s)	33
NcoI	CCATGG	1 cut(s)	573
NdeII	GATC	2 cut(s)	7, 391
NlaIII	CATG	3 cut(s)	193, 422, 577
PagI	TCATGA	1 cut(s)	418
PceI	AGGCCT	1 cut(s)	364
PfeI	GAWTC	3 cut(s)	53, 157, 224
PinAI	ACCGGT	1 cut(s)	247
PleI	GAGTC	2 cut(s)	107, 474
PpsI	GAGTC	2 cut(s)	107, 474
PsiI	TTATAA	1 cut(s)	374
Psp6I	CCWGG	1 cut(s)	184
PspGI	CCWGG	1 cut(s)	184
SalI	GTCGAC	1 cut(s)	21
SaqAI	TTAA	3 cut(s)	15, 326, 492
Sau3AI	GATC	2 cut(s)	7, 391
SchI	GAGTC	2 cut(s)	107, 475
ScrFI	CCNGG	1 cut(s)	186
SduI	GDGCHC	1 cut(s)	588
SetI	ASST	6 cut(s)	121, 296, 485, 492, 513, 595
SfaNI	GCATC	1 cut(s)	630
SfcI	CTRYAG	1 cut(s)	527
SmiI	ATTTAAAT	1 cut(s)	16
SmlI	CTYRAG	1 cut(s)	236
SmoI	CTYRAG	1 cut(s)	236
Sse9I	AATT	4 cut(s)	11, 162, 443, 473
SseBI	AGGCCT	1 cut(s)	364
SspMI	CTAG	2 cut(s)	71, 603
StuI	AGGCCT	1 cut(s)	364
StyD4I	CCNGG	1 cut(s)	184
StyI	CCWWGG	1 cut(s)	573
SwaI	ATTTAAAT	1 cut(s)	16
TaaI	ACNGT	4 cut(s)	49, 179, 531, 617
TaqI	TCGA	1 cut(s)	22
TasI	AATT	4 cut(s)	11, 162, 443, 473
TfiI	GAWTC	3 cut(s)	53, 157, 224
Tru1I	TTAA	3 cut(s)	15, 326, 492
Tru9I	TTAA	3 cut(s)	15, 326, 492
TscAI	CASTG	2 cut(s)	622, 634
TspDTI	ATGAA	1 cut(s)	435
TspGWI	ACGGA	1 cut(s)	28
TspRI	CASTG	2 cut(s)	622, 634
XbaI	TCTAGA	1 cut(s)	70
XmiI	GTMKAC	1 cut(s)	22
XspI	CTAG	2 cut(s)	71, 603

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.