Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp07

Orthogroup ID

OG0002461

Physical Location & Seq

Genomic Coordinates Forward (+)

7760224 .. 7762413

Gene Structure 2190 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.7G041600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 678 bp

ATGGTGATGGCTGCTGCAGATTCACAGTTTCATGTTTTAGCTGTTGATGACAGCCTCATAGATCGCAAACTGATTGAGAGGCTCCTCAAGACCTCTTCATATCAAGTTACTACAGTTGATTCTGGTAGCAAGGCTCTAGAGTTTCTGGGTTTGTATGAGGATGACCAAAGCAGTCCAGATTCACCTTCTGTTTCCCTAAGCAATCAACAGGAAGTGGGAGTGAATCTTGTTATTACAGACTATTGTATGCCTGGCATGACAGGATATGATTTGCTCAAGAAAATCAAGGAATCTTCATCTCTGAGAAACATACCAGTTGTGATCATGTCATCTGAGAATGTGCCTTCAAGAATCAACAGATGCTTGGAAGAAGGTGCTGAAGAATTTTTCTTAAAGCCAGTGAGGCTATCAGACTTGAGTAGGCTCAGACCCCATATCATGAAAACCAAGTCCAAGGATCAAAACCAAGGAAAGGAAGAAAATGAAGAAAAACAAGAGGAATCATCTGAAAGCTCAGAGGTTTCACATGAGCAGGATCAACAAGTAGTAGATCAACAACCACCACCACCACCACCACCCCCAGTACCAGCAAACAGTAACAAGAGGAAGGCCATGGAAGAGGGGCTTTCACCTGATAGAACTAGACCAAGATTCAATGGCATAACCACTGTGGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000156 GO:0000160 GO:0003674 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007154 GO:0007165 GO:0007623 GO:0008150 GO:0009719 GO:0009725 GO:0009735 GO:0009736 GO:0009755 GO:0009889 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0023052 GO:0031323 GO:0031326 GO:0032870 GO:0035556 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048511 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0060089 GO:0060255 GO:0065007 GO:0070887 GO:0071310 GO:0071368 GO:0071495 GO:0080090 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

Response_reg

Protein Analysis

226

Amino Acids

25.09

Weight (kDa)

4.91

Isoelectric Point (pI)

73.09

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002461)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G07440 AT2G41310 AT3G57040 AT3G57040
fragaria_vesca	FvH4_6g25290 FvH4_7g02970
malus_domestica	MD02G1288300.v1.1 MD07G1038500.v1.1 MD12G1093500.v1.1 MD14G1086100.v1.1
prunus_persica	Prupe.2G034700_v2.0.a1 Prupe.7G041600_v2.0.a1
pyrus_communis	pycom12g07920 pycom14g07600
rosa_chinensis	RchiOBHm_Chr1g0323961 RchiOBHm_Chr1g0360681 RchiOBHm_Chr2g0125351
rosa_laevigata	RLG00000018858 RLG00000030239
rosa_multiflora	Rmu_sc0002529.1_g000022 Rmu_sc0002631.1_g000008 Rmu_sc0006175.1_g000025 Rmu_sc0006399.1_g000002
rosa_roxburghii	Rroxscaffold_2G00118090 Rroxscaffold_4G00326040
rosa_rugosa	Rorug01G0040800 Rorug02G0256900
rosa_samantha	Rh1AG058100 Rh1AG058700 Rh1BG049200 Rh1BG049700 Rh1CG060700 Rh1DG064600 Rh2AG315100 Rh2BG323200 Rh2CG305500 Rh2DG341800
rosa_wichuraiana	Rw0G023530 Rw1G004980 Rw1G005010 Rw2G025470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	465, 543
AcsI	RAATTY	1 cut(s)	383
AcuI	CTGAAG	1 cut(s)	399
AfaI	GTAC	1 cut(s)	585
AfiI	CCNNNNNNNGG	1 cut(s)	472
AgsI	TTSAA	2 cut(s)	348, 655
AjnI	CCWGG	1 cut(s)	250
AluBI	AGCT	2 cut(s)	41, 513
AluI	AGCT	2 cut(s)	41, 513
AlwI	GGATC	2 cut(s)	465, 543
AoxI	GGCC	1 cut(s)	609
ApeKI	GCWGC	2 cut(s)	11, 14
ApoI	RAATTY	1 cut(s)	383
AsuHPI	GGTGA	3 cut(s)	16, 174, 621
BciT130I	CCWGG	1 cut(s)	252
BclI	TGATCA	1 cut(s)	321
BfaI	CTAG	2 cut(s)	137, 642
BfmI	CTRYAG	2 cut(s)	15, 111
BglI	GCCNNNNNGGC	1 cut(s)	403
BisI	GCNGC	2 cut(s)	12, 15
BlsI	GCNGC	2 cut(s)	13, 16
Bme1390I	CCNGG	1 cut(s)	252
BmiI	GGNNCC	1 cut(s)	83
BmrFI	CCNGG	1 cut(s)	252
BmrI	ACTGGG	1 cut(s)	575
BmsI	GCATC	1 cut(s)	350
BmuI	ACTGGG	1 cut(s)	575
Bpu10I	CCTNAGC	1 cut(s)	197
BpuEI	CTTGAG	3 cut(s)	71, 260, 436
BsaJI	CCNNGG	3 cut(s)	453, 466, 612
Bsc4I	CCNNNNNNNGG	1 cut(s)	472
Bse1I	ACTGG	3 cut(s)	314, 398, 581
BseBI	CCWGG	1 cut(s)	252
BseDI	CCNNGG	3 cut(s)	453, 466, 612
BseGI	GGATG	1 cut(s)	166
BseLI	CCNNNNNNNGG	1 cut(s)	472
BseMII	CTCAG	4 cut(s)	293, 324, 439, 528
BseNI	ACTGG	3 cut(s)	314, 398, 581
BseRI	GAGGAG	1 cut(s)	74
BshFI	GGCC	1 cut(s)	611
BslI	CCNNNNNNNGG	1 cut(s)	472
BsnI	GGCC	1 cut(s)	611
Bsp143I	GATC	5 cut(s)	61, 321, 457, 535, 550
Bsp19I	CCATGG	1 cut(s)	612
BspANI	GGCC	1 cut(s)	611
BspCNI	CTCAG	4 cut(s)	294, 325, 438, 527
BspHI	TCATGA	1 cut(s)	438
BspLI	GGNNCC	1 cut(s)	83
BspMAI	CTGCAG	1 cut(s)	19
BspPI	GGATC	2 cut(s)	465, 543
BsrI	ACTGG	3 cut(s)	314, 398, 581
BssECI	CCNNGG	3 cut(s)	453, 466, 612
BssMI	GATC	5 cut(s)	61, 321, 457, 535, 550
BssT1I	CCWWGG	3 cut(s)	453, 466, 612
Bst2UI	CCWGG	1 cut(s)	252
Bst4CI	ACNGT	4 cut(s)	27, 115, 596, 670
Bst6I	CTCTTC	2 cut(s)	100, 612
BstDEI	CTNAG	5 cut(s)	197, 302, 333, 425, 514
BstDSI	CCRYGG	1 cut(s)	612
BstF5I	GGATG	1 cut(s)	166
BstKTI	GATC	5 cut(s)	64, 324, 460, 538, 553
BstMBI	GATC	5 cut(s)	61, 321, 457, 535, 550
BstMWI	GCNNNNNNNGC	1 cut(s)	403
BstNI	CCWGG	1 cut(s)	252
BstSCI	CCNGG	1 cut(s)	250
BstSFI	CTRYAG	2 cut(s)	15, 111
BsuRI	GGCC	1 cut(s)	611
BtgI	CCRYGG	1 cut(s)	612
BtsCI	GGATG	1 cut(s)	166
BtsIMutI	CAGTG	2 cut(s)	405, 666
CciI	TCATGA	1 cut(s)	438
Csp6I	GTAC	1 cut(s)	584
CviAII	CATG	6 cut(s)	32, 256, 325, 439, 527, 613
CviQI	GTAC	1 cut(s)	584
DdeI	CTNAG	5 cut(s)	197, 302, 333, 425, 514
DpnI	GATC	5 cut(s)	63, 323, 459, 537, 552
DpnII	GATC	5 cut(s)	61, 321, 457, 535, 550
Eam1104I	CTCTTC	2 cut(s)	100, 612
EarI	CTCTTC	2 cut(s)	100, 612
Eco130I	CCWWGG	3 cut(s)	453, 466, 612
Eco57I	CTGAAG	1 cut(s)	399
EcoRII	CCWGG	1 cut(s)	250
EcoT14I	CCWWGG	3 cut(s)	453, 466, 612
ErhI	CCWWGG	3 cut(s)	453, 466, 612
FaeI	CATG	6 cut(s)	35, 259, 328, 442, 530, 616
FalI	AAGNNNNNCTT	2 cut(s)	609, 641
FatI	CATG	6 cut(s)	31, 255, 324, 438, 526, 612
FbaI	TGATCA	1 cut(s)	321
Fnu4HI	GCNGC	2 cut(s)	12, 15
FokI	GGATG	1 cut(s)	173
Fsp4HI	GCNGC	2 cut(s)	12, 15
FspBI	CTAG	2 cut(s)	137, 642
GluI	GCNGC	2 cut(s)	12, 15
HaeIII	GGCC	1 cut(s)	611
Hin1II	CATG	6 cut(s)	35, 259, 328, 442, 530, 616
HinfI	GANTC	8 cut(s)	20, 119, 179, 223, 290, 351, 500, 651
HphI	GGTGA	3 cut(s)	16, 174, 621
Hpy188I	TCNGA	6 cut(s)	303, 334, 412, 428, 508, 517
Hpy188III	TCNNGA	6 cut(s)	88, 137, 176, 277, 348, 439
HpyAV	CCTTC	4 cut(s)	195, 354, 365, 601
HpyCH4III	ACNGT	4 cut(s)	27, 115, 596, 670
HpyCH4V	TGCA	1 cut(s)	17
HpyF10VI	GCNNNNNNNGC	1 cut(s)	403
HpyF3I	CTNAG	5 cut(s)	197, 302, 333, 425, 514
Hsp92II	CATG	6 cut(s)	35, 259, 328, 442, 530, 616
Ksp22I	TGATCA	1 cut(s)	321
Kzo9I	GATC	5 cut(s)	61, 321, 457, 535, 550
LmnI	GCTCC	1 cut(s)	87
LweI	GCATC	1 cut(s)	350
MaeI	CTAG	2 cut(s)	137, 642
MaeIII	GTNAC	2 cut(s)	106, 596
MalI	GATC	5 cut(s)	63, 323, 459, 537, 552
MboI	GATC	5 cut(s)	61, 321, 457, 535, 550
MboII	GAAGA	7 cut(s)	87, 285, 380, 392, 488, 497, 629
MluCI	AATT	1 cut(s)	383
MseI	TTAA	1 cut(s)	392
MspR9I	CCNGG	1 cut(s)	252
MvaI	CCWGG	1 cut(s)	252
MwoI	GCNNNNNNNGC	1 cut(s)	403
NcoI	CCATGG	1 cut(s)	612
NdeII	GATC	5 cut(s)	61, 321, 457, 535, 550
NlaIII	CATG	6 cut(s)	35, 259, 328, 442, 530, 616
NlaIV	GGNNCC	1 cut(s)	83
PagI	TCATGA	1 cut(s)	438
PfeI	GAWTC	8 cut(s)	20, 119, 179, 223, 290, 351, 500, 651
PkrI	GCNGC	2 cut(s)	13, 16
Psp6I	CCWGG	1 cut(s)	250
PspGI	CCWGG	1 cut(s)	250
PspN4I	GGNNCC	1 cut(s)	83
PstI	CTGCAG	1 cut(s)	19
RsaI	GTAC	1 cut(s)	585
RsaNI	GTAC	1 cut(s)	584
SaqAI	TTAA	1 cut(s)	392
SatI	GCNGC	2 cut(s)	12, 15
Sau3AI	GATC	5 cut(s)	61, 321, 457, 535, 550
ScrFI	CCNGG	1 cut(s)	252
SetI	ASST	7 cut(s)	43, 95, 187, 376, 515, 522, 634
SfaNI	GCATC	1 cut(s)	350
SfcI	CTRYAG	2 cut(s)	15, 111
SmlI	CTYRAG	3 cut(s)	86, 275, 415
SmoI	CTYRAG	3 cut(s)	86, 275, 415
Sse9I	AATT	1 cut(s)	383
SspMI	CTAG	2 cut(s)	137, 642
StyD4I	CCNGG	1 cut(s)	250
StyI	CCWWGG	3 cut(s)	453, 466, 612
TaaI	ACNGT	4 cut(s)	27, 115, 596, 670
TasI	AATT	1 cut(s)	383
TfiI	GAWTC	8 cut(s)	20, 119, 179, 223, 290, 351, 500, 651
Tru1I	TTAA	1 cut(s)	392
Tru9I	TTAA	1 cut(s)	392
TscAI	CASTG	2 cut(s)	405, 673
TseI	GCWGC	2 cut(s)	11, 14
TspDTI	ATGAA	5 cut(s)	20, 87, 285, 455, 498
TspRI	CASTG	2 cut(s)	405, 673
XapI	RAATTY	1 cut(s)	383
XbaI	TCTAGA	1 cut(s)	136
XspI	CTAG	2 cut(s)	137, 642

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.