Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr12

Orthogroup ID

OG0002461

Physical Location & Seq

Genomic Coordinates Reverse (-)

8653271 .. 8654944

Gene Structure 1674 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom12g07920.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 666 bp

ATGGGGATGGCTGCCACAGACTCACAGTTCCATGTTCTAGCTGTTGATGACAGCATCATCGATCGGAAGCTGATCGAGAGGCTCCTCAAGAGCTCATCGTACCAAGTTACTACAGTTGATTCTGGTAGTAAGGCTTTAGAGTTTCTGGGTTTGTATGAGGATGATCAAAGCAGTTCAGATTCACCTTCTGTTTCCCCAAACAATCAACAGGAAGTGGGAGTGAATCTTGTAATTACAGACTACTGTATGCCTGGAATGACAGGATATGATTTGCTCAGGAAAATAAAGGAGTCTTCATCTCTGAGGAACATACCTGTTGTGATCATGTCATCTGAGAATGTGCCTTCAAGAATCAACAGATGCTTGGAAGAAGGGGCAGAAGAATTTTTTTTAAAGCCAGTGAGATTATCAGACTTGAGTAGGCTTAGACCCCATTTGATGAAAGCCAAGTCCAACAATCAAAACCAAGAAAAACAAGAAGATGAATCTGAAAGTTCAGAGACTCAATCACAGGAGCAGGAGCATCATGAACTAGAACAACAACAACAACCGCAACCGCAACTGCAACCGATACCGCCAAACAGTAACAAGAGGAAGGCGATGGAAGAGGGGTTTTCACCTGATATAACTAGACCAAGATACAGTGGAATCGCCACTCTGGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000156 GO:0000160 GO:0003674 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007154 GO:0007165 GO:0007623 GO:0008150 GO:0009719 GO:0009725 GO:0009735 GO:0009736 GO:0009755 GO:0009889 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0023052 GO:0031323 GO:0031326 GO:0032870 GO:0035556 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048511 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0060089 GO:0060255 GO:0065007 GO:0070887 GO:0071310 GO:0071368 GO:0071495 GO:0080090 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

Response_reg

Protein Analysis

222

Amino Acids

24.87

Weight (kDa)

4.89

Isoelectric Point (pI)

75.93

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002461)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G07440 AT2G41310 AT3G57040 AT3G57040
fragaria_vesca	FvH4_6g25290 FvH4_7g02970
malus_domestica	MD02G1288300.v1.1 MD07G1038500.v1.1 MD12G1093500.v1.1 MD14G1086100.v1.1
prunus_persica	Prupe.2G034700_v2.0.a1 Prupe.7G041600_v2.0.a1
pyrus_communis	pycom12g07920 pycom14g07600
rosa_chinensis	RchiOBHm_Chr1g0323961 RchiOBHm_Chr1g0360681 RchiOBHm_Chr2g0125351
rosa_laevigata	RLG00000018858 RLG00000030239
rosa_multiflora	Rmu_sc0002529.1_g000022 Rmu_sc0002631.1_g000008 Rmu_sc0006175.1_g000025 Rmu_sc0006399.1_g000002
rosa_roxburghii	Rroxscaffold_2G00118090 Rroxscaffold_4G00326040
rosa_rugosa	Rorug01G0040800 Rorug02G0256900
rosa_samantha	Rh1AG058100 Rh1AG058700 Rh1BG049200 Rh1BG049700 Rh1CG060700 Rh1DG064600 Rh2AG315100 Rh2BG323200 Rh2CG305500 Rh2DG341800
rosa_wichuraiana	Rw0G023530 Rw1G004980 Rw1G005010 Rw2G025470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	551, 557, 575
AcsI	RAATTY	1 cut(s)	383
AfaI	GTAC	1 cut(s)	101
AgsI	TTSAA	1 cut(s)	348
AjnI	CCWGG	1 cut(s)	250
AluBI	AGCT	3 cut(s)	41, 70, 93
AluI	AGCT	3 cut(s)	41, 70, 93
Alw21I	GWGCWC	1 cut(s)	95
Alw26I	GTCTC	1 cut(s)	494
ApeKI	GCWGC	1 cut(s)	11
ApoI	RAATTY	1 cut(s)	383
AsuHPI	GGTGA	2 cut(s)	174, 609
BanII	GRGCYC	1 cut(s)	95
BbsI	GAAGAC	1 cut(s)	285
Bbv12I	GWGCWC	1 cut(s)	95
BccI	CCATC	1 cut(s)	595
BciT130I	CCWGG	1 cut(s)	252
BclI	TGATCA	2 cut(s)	163, 321
BcoDI	GTCTC	1 cut(s)	494
BfaI	CTAG	3 cut(s)	38, 533, 630
BfmI	CTRYAG	1 cut(s)	111
BisI	GCNGC	1 cut(s)	12
BlsI	GCNGC	1 cut(s)	13
Bme1390I	CCNGG	1 cut(s)	252
BmiI	GGNNCC	1 cut(s)	83
BmrFI	CCNGG	1 cut(s)	252
BmsI	GCATC	3 cut(s)	63, 350, 532
BpiI	GAAGAC	1 cut(s)	285
Bpu10I	CCTNAGC	1 cut(s)	275
BpuEI	CTTGAG	2 cut(s)	71, 436
Bsa29I	ATCGAT	1 cut(s)	60
Bse1I	ACTGG	1 cut(s)	398
BseBI	CCWGG	1 cut(s)	252
BseCI	ATCGAT	1 cut(s)	60
BseGI	GGATG	2 cut(s)	12, 166
BseMII	CTCAG	3 cut(s)	289, 293, 324
BseNI	ACTGG	1 cut(s)	398
BseRI	GAGGAG	1 cut(s)	74
Bsh1285I	CGRYCG	1 cut(s)	64
BshVI	ATCGAT	1 cut(s)	60
BsiEI	CGRYCG	1 cut(s)	64
BsiHKAI	GWGCWC	1 cut(s)	95
BsmAI	GTCTC	1 cut(s)	494
Bsp1286I	GDGCHC	1 cut(s)	95
Bsp143I	GATC	4 cut(s)	61, 72, 163, 321
BspACI	CCGC	3 cut(s)	551, 557, 575
BspCNI	CTCAG	3 cut(s)	288, 294, 325
BspDI	ATCGAT	1 cut(s)	60
BspHI	TCATGA	1 cut(s)	526
BspLI	GGNNCC	1 cut(s)	83
BsrI	ACTGG	1 cut(s)	398
BssMI	GATC	4 cut(s)	61, 72, 163, 321
Bst2UI	CCWGG	1 cut(s)	252
Bst4CI	ACNGT	5 cut(s)	27, 115, 245, 584, 644
Bst6I	CTCTTC	1 cut(s)	600
BstDEI	CTNAG	4 cut(s)	275, 302, 333, 425
BstF5I	GGATG	2 cut(s)	12, 166
BstKTI	GATC	4 cut(s)	64, 75, 166, 324
BstMAI	GTCTC	1 cut(s)	494
BstMBI	GATC	4 cut(s)	61, 72, 163, 321
BstMCI	CGRYCG	1 cut(s)	64
BstNI	CCWGG	1 cut(s)	252
BstSCI	CCNGG	1 cut(s)	250
BstSFI	CTRYAG	1 cut(s)	111
BstV2I	GAAGAC	1 cut(s)	285
Bsu15I	ATCGAT	1 cut(s)	60
BsuTUI	ATCGAT	1 cut(s)	60
BtgZI	GCGATG	1 cut(s)	614
BtsCI	GGATG	2 cut(s)	12, 166
BtsIMutI	CAGTG	2 cut(s)	405, 649
CciI	TCATGA	1 cut(s)	526
ClaI	ATCGAT	1 cut(s)	60
Csp6I	GTAC	1 cut(s)	100
CviAII	CATG	3 cut(s)	32, 325, 527
CviJI	RGCY	9 cut(s)	11, 41, 70, 82, 93, 134, 397, 424, 446
CviKI_1	RGCY	9 cut(s)	11, 41, 70, 82, 93, 134, 397, 424, 446
CviQI	GTAC	1 cut(s)	100
DdeI	CTNAG	4 cut(s)	275, 302, 333, 425
DpnI	GATC	4 cut(s)	63, 74, 165, 323
DpnII	GATC	4 cut(s)	61, 72, 163, 321
DraI	TTTAAA	1 cut(s)	393
Eam1104I	CTCTTC	1 cut(s)	600
EarI	CTCTTC	1 cut(s)	600
Ecl136II	GAGCTC	1 cut(s)	93
Eco24I	GRGCYC	1 cut(s)	95
Eco53kI	GAGCTC	1 cut(s)	93
EcoICRI	GAGCTC	1 cut(s)	93
EcoRII	CCWGG	1 cut(s)	250
EcoT38I	GRGCYC	1 cut(s)	95
FaeI	CATG	3 cut(s)	35, 328, 530
FaiI	YATR	8 cut(s)	33, 156, 248, 267, 311, 326, 528, 626
FatI	CATG	3 cut(s)	31, 324, 526
FbaI	TGATCA	2 cut(s)	163, 321
Fnu4HI	GCNGC	1 cut(s)	12
FokI	GGATG	2 cut(s)	19, 173
FriOI	GRGCYC	1 cut(s)	95
Fsp4HI	GCNGC	1 cut(s)	12
FspBI	CTAG	3 cut(s)	38, 533, 630
GluI	GCNGC	1 cut(s)	12
Hin1II	CATG	3 cut(s)	35, 328, 530
HinfI	GANTC	9 cut(s)	20, 119, 179, 223, 290, 351, 485, 502, 648
HphI	GGTGA	2 cut(s)	174, 609
Hpy188I	TCNGA	7 cut(s)	66, 178, 303, 334, 412, 490, 499
Hpy188III	TCNNGA	5 cut(s)	76, 88, 277, 348, 527
HpyAV	CCTTC	4 cut(s)	195, 354, 365, 589
HpyCH4III	ACNGT	5 cut(s)	27, 115, 245, 584, 644
HpyCH4V	TGCA	1 cut(s)	565
HpyF3I	CTNAG	4 cut(s)	275, 302, 333, 425
Hsp92II	CATG	3 cut(s)	35, 328, 530
Ksp22I	TGATCA	2 cut(s)	163, 321
Kzo9I	GATC	4 cut(s)	61, 72, 163, 321
LmnI	GCTCC	3 cut(s)	87, 514, 520
LweI	GCATC	3 cut(s)	63, 350, 532
MaeI	CTAG	3 cut(s)	38, 533, 630
MaeIII	GTNAC	2 cut(s)	106, 584
MalI	GATC	4 cut(s)	63, 74, 165, 323
MboI	GATC	4 cut(s)	61, 72, 163, 321
MboII	GAAGA	5 cut(s)	285, 380, 392, 491, 617
MhlI	GDGCHC	1 cut(s)	95
MluCI	AATT	2 cut(s)	231, 383
MlyI	GAGTC	3 cut(s)	14, 299, 496
MmeI	TCCRAC	1 cut(s)	477
MnlI	CCTC	6 cut(s)	72, 95, 151, 297, 585, 601
MseI	TTAA	1 cut(s)	392
MspR9I	CCNGG	1 cut(s)	252
MvaI	CCWGG	1 cut(s)	252
NdeII	GATC	4 cut(s)	61, 72, 163, 321
NlaIII	CATG	3 cut(s)	35, 328, 530
NlaIV	GGNNCC	1 cut(s)	83
PagI	TCATGA	1 cut(s)	526
PfeI	GAWTC	6 cut(s)	119, 179, 223, 351, 485, 648
PkrI	GCNGC	1 cut(s)	13
Ple19I	CGATCG	1 cut(s)	64
PleI	GAGTC	3 cut(s)	14, 298, 496
PpsI	GAGTC	3 cut(s)	14, 298, 496
Psp124BI	GAGCTC	1 cut(s)	95
Psp6I	CCWGG	1 cut(s)	250
PspGI	CCWGG	1 cut(s)	250
PspN4I	GGNNCC	1 cut(s)	83
PvuI	CGATCG	1 cut(s)	64
RsaI	GTAC	1 cut(s)	101
RsaNI	GTAC	1 cut(s)	100
SacI	GAGCTC	1 cut(s)	95
SaqAI	TTAA	1 cut(s)	392
SatI	GCNGC	1 cut(s)	12
Sau3AI	GATC	4 cut(s)	61, 72, 163, 321
SchI	GAGTC	3 cut(s)	14, 299, 496
ScrFI	CCNGG	1 cut(s)	252
SduI	GDGCHC	1 cut(s)	95
SetI	ASST	6 cut(s)	43, 72, 95, 187, 316, 622
SfaNI	GCATC	3 cut(s)	63, 350, 532
SfcI	CTRYAG	1 cut(s)	111
SmlI	CTYRAG	2 cut(s)	86, 415
SmoI	CTYRAG	2 cut(s)	86, 415
Sse9I	AATT	2 cut(s)	231, 383
SsiI	CCGC	3 cut(s)	551, 557, 575
SspMI	CTAG	3 cut(s)	38, 533, 630
SstI	GAGCTC	1 cut(s)	95
StyD4I	CCNGG	1 cut(s)	250
TaaI	ACNGT	5 cut(s)	27, 115, 245, 584, 644
TaqI	TCGA	2 cut(s)	60, 75
TasI	AATT	2 cut(s)	231, 383
TfiI	GAWTC	6 cut(s)	119, 179, 223, 351, 485, 648
Tru1I	TTAA	1 cut(s)	392
Tru9I	TTAA	1 cut(s)	392
TscAI	CASTG	2 cut(s)	405, 649
TseI	GCWGC	1 cut(s)	11
TspDTI	ATGAA	4 cut(s)	285, 455, 498, 543
TspRI	CASTG	2 cut(s)	405, 649
XapI	RAATTY	1 cut(s)	383
XspI	CTAG	3 cut(s)	38, 533, 630

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.