Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0002461

Physical Location & Seq

Genomic Coordinates Reverse (-)

40710570 .. 40712099

Gene Structure 1530 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG315100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 702 bp

ATGGGGATGGCCGCAGATTCTCAGTTTCATGTTTTAGCTGTTGATGACAGCCTCATAGATCGAAAACTGATTGAAAGGCTTCTCAAGACCTCCTCATATCAAGTTACTACGGTTGATTCTGGTAGTAAGGCTTTAGAGTTTCTGGGTTTGTATGAGGATGACCAAACCAATCCTGACTCACCTTCAGTTTCCCCAAACAATCAACAGGAAGTGGAAGTGAATCTAATTATCACAGACTACTGTATGCCAGGCATGACAGGATATGATTTGCTCAGGAAAATCAAGGAATCTTCTTCACTCAAGAACATACCGGTTGTGATAATGTCATCTGAGAATGTGCCTTCAAGAATAAATAGGTGTTTGGAACAAGGGGCAGAAGAGTTTTTCTTAAAGCCAGTAAGATTGTCAGACTTGAATAGGCTTAGGCCTCATATTATAAAAACCAAGTCCAAGGATCAAAACCAAGAAAAGCCAAGAACTCATGAAGAAGAAGAAGCAAGTCAAAAATTGGAAACGTCATCAAAAAAAAGTCAAAAATTGGAAAGCTCGGAGGTTAAGCAGGAACAACAAGAGCTACTACATCATCAACTACAATTACAACAATCACAGCCACCAAATAGTAACAAGCGCAAGACCATGGAAGAGGGGCTCTCACCTGATAGAACTAGACCCAGATACAGTGGCATCACCACTGCCGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000156 GO:0000160 GO:0003674 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007154 GO:0007165 GO:0007623 GO:0008150 GO:0009719 GO:0009725 GO:0009735 GO:0009736 GO:0009755 GO:0009889 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0023052 GO:0031323 GO:0031326 GO:0032870 GO:0035556 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048511 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0060089 GO:0060255 GO:0065007 GO:0070887 GO:0071310 GO:0071368 GO:0071495 GO:0080090 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

Response_reg

Protein Analysis

233

Amino Acids

26.47

Weight (kDa)

5.82

Isoelectric Point (pI)

64.56

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Response_reg	PF00072	11 - 138	1.6e-18	Response regulator receiver domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0002461)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G07440 AT2G41310 AT3G57040 AT3G57040
fragaria_vesca	FvH4_6g25290 FvH4_7g02970
malus_domestica	MD02G1288300.v1.1 MD07G1038500.v1.1 MD12G1093500.v1.1 MD14G1086100.v1.1
prunus_persica	Prupe.2G034700_v2.0.a1 Prupe.7G041600_v2.0.a1
pyrus_communis	pycom12g07920 pycom14g07600
rosa_chinensis	RchiOBHm_Chr1g0323961 RchiOBHm_Chr1g0360681 RchiOBHm_Chr2g0125351
rosa_laevigata	RLG00000018858 RLG00000030239
rosa_multiflora	Rmu_sc0002529.1_g000022 Rmu_sc0002631.1_g000008 Rmu_sc0006175.1_g000025 Rmu_sc0006399.1_g000002
rosa_roxburghii	Rroxscaffold_2G00118090 Rroxscaffold_4G00326040
rosa_rugosa	Rorug01G0040800 Rorug02G0256900
rosa_samantha	Rh1AG058100 Rh1AG058700 Rh1BG049200 Rh1BG049700 Rh1CG060700 Rh1DG064600 Rh2AG315100 Rh2BG323200 Rh2CG305500 Rh2DG341800
rosa_wichuraiana	Rw0G023530 Rw1G004980 Rw1G005010 Rw2G025470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	437
AciI	CCGC	1 cut(s)	12
AclWI	GGATC	1 cut(s)	462
AcoI	YGGCCR	1 cut(s)	9
AcuI	CTGAAG	1 cut(s)	168
AgeI	ACCGGT	1 cut(s)	310
AgsI	TTSAA	3 cut(s)	74, 345, 415
AjnI	CCWGG	1 cut(s)	247
AluBI	AGCT	3 cut(s)	38, 546, 574
AluI	AGCT	3 cut(s)	38, 546, 574
AlwI	GGATC	1 cut(s)	462
AoxI	GGCC	2 cut(s)	9, 425
AsiGI	ACCGGT	1 cut(s)	310
Asp700I	GAANNNNTTC	1 cut(s)	78
AspLEI	GCGC	1 cut(s)	630
AsuHPI	GGTGA	3 cut(s)	171, 645, 679
BanII	GRGCYC	1 cut(s)	651
BceAI	ACGGC	1 cut(s)	680
BciT130I	CCWGG	1 cut(s)	249
BfaI	CTAG	1 cut(s)	666
BisI	GCNGC	1 cut(s)	12
BlsI	GCNGC	1 cut(s)	13
Bme1390I	CCNGG	1 cut(s)	249
BmrFI	CCNGG	1 cut(s)	249
BmsI	GCATC	1 cut(s)	693
BplI	GAGNNNNNCTC	2 cut(s)	635, 667
Bpu10I	CCTNAGC	2 cut(s)	272, 422
BpuEI	CTTGAG	2 cut(s)	68, 284
BsaJI	CCNNGG	2 cut(s)	450, 636
BsaWI	WCCGGW	1 cut(s)	310
Bse118I	RCCGGY	1 cut(s)	310
Bse1I	ACTGG	1 cut(s)	395
BseBI	CCWGG	1 cut(s)	249
BseDI	CCNNGG	2 cut(s)	450, 636
BseGI	GGATG	2 cut(s)	12, 163
BseMII	CTCAG	3 cut(s)	35, 286, 321
BseNI	ACTGG	1 cut(s)	395
BseRI	GAGGAG	1 cut(s)	82
BshFI	GGCC	2 cut(s)	11, 427
BshTI	ACCGGT	1 cut(s)	310
BsiSI	CCGG	1 cut(s)	311
BsnI	GGCC	2 cut(s)	11, 427
Bsp1286I	GDGCHC	1 cut(s)	651
Bsp143I	GATC	2 cut(s)	58, 454
Bsp19I	CCATGG	1 cut(s)	636
BspACI	CCGC	1 cut(s)	12
BspANI	GGCC	2 cut(s)	11, 427
BspCNI	CTCAG	3 cut(s)	34, 285, 322
BspHI	TCATGA	1 cut(s)	481
BspPI	GGATC	1 cut(s)	462
BsrFI	RCCGGY	1 cut(s)	310
BsrI	ACTGG	1 cut(s)	395
BssAI	RCCGGY	1 cut(s)	310
BssECI	CCNNGG	2 cut(s)	450, 636
BssMI	GATC	2 cut(s)	58, 454
BssT1I	CCWWGG	2 cut(s)	450, 636
Bst2UI	CCWGG	1 cut(s)	249
Bst4CI	ACNGT	3 cut(s)	112, 242, 680
Bst6I	CTCTTC	2 cut(s)	372, 636
BstDEI	CTNAG	4 cut(s)	21, 272, 330, 422
BstDSI	CCRYGG	1 cut(s)	636
BstF5I	GGATG	2 cut(s)	12, 163
BstHHI	GCGC	1 cut(s)	630
BstKTI	GATC	2 cut(s)	61, 457
BstMBI	GATC	2 cut(s)	58, 454
BstNI	CCWGG	1 cut(s)	249
BstSCI	CCNGG	1 cut(s)	247
BsuRI	GGCC	2 cut(s)	11, 427
BtgI	CCRYGG	1 cut(s)	636
BtsCI	GGATG	2 cut(s)	12, 163
BtsI	GCAGTG	1 cut(s)	690
BtsIMutI	CAGTG	2 cut(s)	685, 690
CciI	TCATGA	1 cut(s)	481
CfoI	GCGC	1 cut(s)	630
Cfr10I	RCCGGY	1 cut(s)	310
CspAI	ACCGGT	1 cut(s)	310
CviAII	CATG	4 cut(s)	29, 253, 482, 637
DdeI	CTNAG	4 cut(s)	21, 272, 330, 422
DpnI	GATC	2 cut(s)	60, 456
DpnII	GATC	2 cut(s)	58, 454
EaeI	YGGCCR	1 cut(s)	9
Eam1104I	CTCTTC	2 cut(s)	372, 636
EarI	CTCTTC	2 cut(s)	372, 636
Eco130I	CCWWGG	2 cut(s)	450, 636
Eco147I	AGGCCT	1 cut(s)	427
Eco24I	GRGCYC	1 cut(s)	651
Eco57I	CTGAAG	1 cut(s)	168
EcoRII	CCWGG	1 cut(s)	247
EcoT14I	CCWWGG	2 cut(s)	450, 636
EcoT38I	GRGCYC	1 cut(s)	651
ErhI	CCWWGG	2 cut(s)	450, 636
FaeI	CATG	4 cut(s)	32, 256, 485, 640
FatI	CATG	4 cut(s)	28, 252, 481, 636
Fnu4HI	GCNGC	1 cut(s)	12
FokI	GGATG	2 cut(s)	19, 170
FriOI	GRGCYC	1 cut(s)	651
Fsp4HI	GCNGC	1 cut(s)	12
FspBI	CTAG	1 cut(s)	666
GlaI	GCGC	1 cut(s)	629
GluI	GCNGC	1 cut(s)	12
HaeIII	GGCC	2 cut(s)	11, 427
HapII	CCGG	1 cut(s)	311
HhaI	GCGC	1 cut(s)	630
Hin1II	CATG	4 cut(s)	32, 256, 485, 640
Hin6I	GCGC	1 cut(s)	628
HinP1I	GCGC	1 cut(s)	628
HinfI	GANTC	5 cut(s)	17, 116, 176, 220, 287
HpaII	CCGG	1 cut(s)	311
HphI	GGTGA	3 cut(s)	171, 645, 679
Hpy188I	TCNGA	3 cut(s)	331, 409, 550
Hpy188III	TCNNGA	6 cut(s)	85, 173, 274, 301, 345, 482
HpyAV	CCTTC	2 cut(s)	192, 351
HpyCH4III	ACNGT	3 cut(s)	112, 242, 680
HpyCH4IV	ACGT	1 cut(s)	515
HpyF3I	CTNAG	4 cut(s)	21, 272, 330, 422
HpySE526I	ACGT	1 cut(s)	515
Hsp92II	CATG	4 cut(s)	32, 256, 485, 640
HspAI	GCGC	1 cut(s)	628
Kzo9I	GATC	2 cut(s)	58, 454
LweI	GCATC	1 cut(s)	693
MaeI	CTAG	1 cut(s)	666
MaeII	ACGT	1 cut(s)	515
MaeIII	GTNAC	2 cut(s)	103, 620
MalI	GATC	2 cut(s)	60, 456
MboI	GATC	2 cut(s)	58, 454
MboII	GAAGA	7 cut(s)	282, 285, 389, 497, 500, 503, 653
MhlI	GDGCHC	1 cut(s)	651
MluCI	AATT	4 cut(s)	225, 506, 536, 593
MlyI	GAGTC	1 cut(s)	170
MnlI	CCTC	7 cut(s)	62, 100, 103, 148, 438, 544, 637
MroXI	GAANNNNTTC	1 cut(s)	78
MseI	TTAA	2 cut(s)	389, 555
MspI	CCGG	1 cut(s)	311
MspR9I	CCNGG	1 cut(s)	249
MvaI	CCWGG	1 cut(s)	249
NcoI	CCATGG	1 cut(s)	636
NdeII	GATC	2 cut(s)	58, 454
NlaIII	CATG	4 cut(s)	32, 256, 485, 640
PagI	TCATGA	1 cut(s)	481
PceI	AGGCCT	1 cut(s)	427
PdmI	GAANNNNTTC	1 cut(s)	78
PfeI	GAWTC	4 cut(s)	17, 116, 220, 287
PinAI	ACCGGT	1 cut(s)	310
PkrI	GCNGC	1 cut(s)	13
PleI	GAGTC	1 cut(s)	170
PpsI	GAGTC	1 cut(s)	170
PsiI	TTATAA	1 cut(s)	437
Psp6I	CCWGG	1 cut(s)	247
PspGI	CCWGG	1 cut(s)	247
SaqAI	TTAA	2 cut(s)	389, 555
SatI	GCNGC	1 cut(s)	12
Sau3AI	GATC	2 cut(s)	58, 454
SchI	GAGTC	1 cut(s)	170
ScrFI	CCNGG	1 cut(s)	249
SduI	GDGCHC	1 cut(s)	651
SetI	ASST	9 cut(s)	40, 92, 184, 359, 518, 548, 555, 576, 658
SfaNI	GCATC	1 cut(s)	693
SmlI	CTYRAG	2 cut(s)	83, 299
SmoI	CTYRAG	2 cut(s)	83, 299
Sse9I	AATT	4 cut(s)	225, 506, 536, 593
SseBI	AGGCCT	1 cut(s)	427
SsiI	CCGC	1 cut(s)	12
SspMI	CTAG	1 cut(s)	666
StuI	AGGCCT	1 cut(s)	427
StyD4I	CCNGG	1 cut(s)	247
StyI	CCWWGG	2 cut(s)	450, 636
TaaI	ACNGT	3 cut(s)	112, 242, 680
TaiI	ACGT	1 cut(s)	518
TaqI	TCGA	1 cut(s)	61
TasI	AATT	4 cut(s)	225, 506, 536, 593
TauI	GCSGC	1 cut(s)	14
TfiI	GAWTC	4 cut(s)	17, 116, 220, 287
Tru1I	TTAA	2 cut(s)	389, 555
Tru9I	TTAA	2 cut(s)	389, 555
TscAI	CASTG	2 cut(s)	685, 697
TspDTI	ATGAA	2 cut(s)	17, 498
TspRI	CASTG	2 cut(s)	685, 697
XmnI	GAANNNNTTC	1 cut(s)	78
XspI	CTAG	1 cut(s)	666

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.