Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0002461

Physical Location & Seq

Genomic Coordinates Reverse (-)

19151971 .. 19154222

Gene Structure 2252 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g25290.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 678 bp

ATGGGGACGGCTGCAGATTCTCAGTTTCATGTTTTAGCTGTTGATGACAGCCTCATAGATCGGAAACTGATTGAAAGGCTTCTCAAGACCTCCTCATATCAAGTTACAACAGTTGATTCTGGTAGTAAGGCTCTAGAGTTTCTGGGTTTCTATGAGGATGACCTGACCAATCCTGATTCACCTTCAGTTTCCCCAAGCAATCAACAGGAAGTGGAAGTGAATCTAATTATTACCGACTACTGTATGCCTGGCATGACAGGATATGATTTGCTCAGAAAAATCAAGGAGTCTTCTTCACTCAAGAACATACCGGTAGTGATAATGTCATCTGAGAATGTGCCTTCAAGAATAAATAGGTGTTTGGAAGAAGGGGCAGAAGAATTTTTCTTAAAGCCAGTAAGATTGTCAGACTTGAATAGGCTTAGGCCTCGTATAATAAAAACCAAGTCCAAGGATCACAACCAAGAAAAGCCAACAAATTTTGAAGAACAAGCAAGTCAAAAATTGGAGATCTCAAAGGATCAGCAGGAACAAGAAGAAGAAGAGCTATTACACCATCAGCTACAGTTACAACAACCACCGCCACCAAGTACTAACAAGCGGAAGACCATGGAAGAGGGGCTCTCACCTGATAGAACGAGACCCAGATACACCAGTGGCATCACCACTGTGGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000156 GO:0000160 GO:0003674 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007154 GO:0007165 GO:0007623 GO:0008150 GO:0009719 GO:0009725 GO:0009735 GO:0009736 GO:0009755 GO:0009889 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0023052 GO:0031323 GO:0031326 GO:0032870 GO:0035556 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048511 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0060089 GO:0060255 GO:0065007 GO:0070887 GO:0071310 GO:0071368 GO:0071495 GO:0080090 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

Response_reg

Protein Analysis

226

Amino Acids

25.58

Weight (kDa)

5.17

Isoelectric Point (pI)

63.29

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Response_reg	PF00072	70 - 138	3.4e-14	Response regulator receiver domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0002461)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G07440 AT2G41310 AT3G57040 AT3G57040
fragaria_vesca	FvH4_6g25290 FvH4_7g02970
malus_domestica	MD02G1288300.v1.1 MD07G1038500.v1.1 MD12G1093500.v1.1 MD14G1086100.v1.1
prunus_persica	Prupe.2G034700_v2.0.a1 Prupe.7G041600_v2.0.a1
pyrus_communis	pycom12g07920 pycom14g07600
rosa_chinensis	RchiOBHm_Chr1g0323961 RchiOBHm_Chr1g0360681 RchiOBHm_Chr2g0125351
rosa_laevigata	RLG00000018858 RLG00000030239
rosa_multiflora	Rmu_sc0002529.1_g000022 Rmu_sc0002631.1_g000008 Rmu_sc0006175.1_g000025 Rmu_sc0006399.1_g000002
rosa_roxburghii	Rroxscaffold_2G00118090 Rroxscaffold_4G00326040
rosa_rugosa	Rorug01G0040800 Rorug02G0256900
rosa_samantha	Rh1AG058100 Rh1AG058700 Rh1BG049200 Rh1BG049700 Rh1CG060700 Rh1DG064600 Rh2AG315100 Rh2BG323200 Rh2CG305500 Rh2DG341800
rosa_wichuraiana	Rw0G023530 Rw1G004980 Rw1G005010 Rw2G025470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	581, 601
AclWI	GGATC	2 cut(s)	462, 528
AcsI	RAATTY	2 cut(s)	380, 478
AcuI	CTGAAG	1 cut(s)	168
AfaI	GTAC	1 cut(s)	592
AgeI	ACCGGT	1 cut(s)	310
AgsI	TTSAA	4 cut(s)	74, 345, 415, 485
AjnI	CCWGG	1 cut(s)	247
AleI	CACNNNNGTG	1 cut(s)	668
AluBI	AGCT	3 cut(s)	38, 547, 562
AluI	AGCT	3 cut(s)	38, 547, 562
Alw26I	GTCTC	1 cut(s)	634
AlwI	GGATC	2 cut(s)	462, 528
AoxI	GGCC	1 cut(s)	425
ApeKI	GCWGC	1 cut(s)	11
ApoI	RAATTY	2 cut(s)	380, 478
AsiGI	ACCGGT	1 cut(s)	310
Asp700I	GAANNNNTTC	1 cut(s)	78
AsuHPI	GGTGA	3 cut(s)	171, 618, 655
BaeI	ACNNNNGTAYC	2 cut(s)	640, 673
BanII	GRGCYC	1 cut(s)	624
BarI	GAAGNNNNNNTAC	2 cut(s)	534, 566
BbsI	GAAGAC	2 cut(s)	282, 611
BccI	CCATC	1 cut(s)	564
BceAI	ACGGC	1 cut(s)	24
BciT130I	CCWGG	1 cut(s)	249
BcoDI	GTCTC	1 cut(s)	634
BfaI	CTAG	1 cut(s)	134
BfmI	CTRYAG	2 cut(s)	12, 563
BglII	AGATCT	1 cut(s)	510
BisI	GCNGC	1 cut(s)	12
BlsI	GCNGC	1 cut(s)	13
BmcAI	AGTACT	1 cut(s)	592
Bme1390I	CCNGG	1 cut(s)	249
BmrFI	CCNGG	1 cut(s)	249
BmsI	GCATC	1 cut(s)	669
BpiI	GAAGAC	2 cut(s)	282, 611
BplI	GAGNNNNNCTC	2 cut(s)	608, 640
Bpu10I	CCTNAGC	1 cut(s)	422
BpuEI	CTTGAG	2 cut(s)	68, 284
BsaI	GGTCTC	1 cut(s)	634
BsaJI	CCNNGG	2 cut(s)	450, 609
BsaWI	WCCGGW	1 cut(s)	310
Bse118I	RCCGGY	1 cut(s)	310
Bse1I	ACTGG	2 cut(s)	395, 654
BseBI	CCWGG	1 cut(s)	249
BseDI	CCNNGG	2 cut(s)	450, 609
BseGI	GGATG	1 cut(s)	163
BseMII	CTCAG	3 cut(s)	35, 286, 321
BseNI	ACTGG	2 cut(s)	395, 654
BseRI	GAGGAG	1 cut(s)	82
BshFI	GGCC	1 cut(s)	427
BshTI	ACCGGT	1 cut(s)	310
BsiSI	CCGG	1 cut(s)	311
BslFI	GGGAC	1 cut(s)	19
BsmAI	GTCTC	1 cut(s)	634
BsmFI	GGGAC	1 cut(s)	19
BsnI	GGCC	1 cut(s)	427
Bso31I	GGTCTC	1 cut(s)	634
Bsp1286I	GDGCHC	1 cut(s)	624
Bsp143I	GATC	4 cut(s)	58, 454, 510, 520
Bsp19I	CCATGG	1 cut(s)	609
BspACI	CCGC	2 cut(s)	581, 601
BspANI	GGCC	1 cut(s)	427
BspCNI	CTCAG	3 cut(s)	34, 285, 322
BspMAI	CTGCAG	1 cut(s)	16
BspPI	GGATC	2 cut(s)	462, 528
BspQI	GCTCTTC	1 cut(s)	537
BspTNI	GGTCTC	1 cut(s)	634
BsrFI	RCCGGY	1 cut(s)	310
BsrI	ACTGG	2 cut(s)	395, 654
BssAI	RCCGGY	1 cut(s)	310
BssECI	CCNNGG	2 cut(s)	450, 609
BssMI	GATC	4 cut(s)	58, 454, 510, 520
BssT1I	CCWWGG	2 cut(s)	450, 609
Bst2UI	CCWGG	1 cut(s)	249
Bst4CI	ACNGT	4 cut(s)	112, 242, 567, 670
Bst6I	CTCTTC	2 cut(s)	537, 609
BstDEI	CTNAG	4 cut(s)	21, 272, 330, 422
BstDSI	CCRYGG	1 cut(s)	609
BstF5I	GGATG	1 cut(s)	163
BstKTI	GATC	4 cut(s)	61, 457, 513, 523
BstMAI	GTCTC	1 cut(s)	634
BstMBI	GATC	4 cut(s)	58, 454, 510, 520
BstNI	CCWGG	1 cut(s)	249
BstSCI	CCNGG	1 cut(s)	247
BstSFI	CTRYAG	2 cut(s)	12, 563
BstV2I	GAAGAC	2 cut(s)	282, 611
BstX2I	RGATCY	1 cut(s)	510
BstYI	RGATCY	1 cut(s)	510
BsuRI	GGCC	1 cut(s)	427
BtgI	CCRYGG	1 cut(s)	609
BtsCI	GGATG	1 cut(s)	163
BtsIMutI	CAGTG	2 cut(s)	661, 666
Cfr10I	RCCGGY	1 cut(s)	310
Csp6I	GTAC	1 cut(s)	591
CspAI	ACCGGT	1 cut(s)	310
CviAII	CATG	3 cut(s)	29, 253, 610
CviQI	GTAC	1 cut(s)	591
DdeI	CTNAG	4 cut(s)	21, 272, 330, 422
DpnI	GATC	4 cut(s)	60, 456, 512, 522
DpnII	GATC	4 cut(s)	58, 454, 510, 520
Eam1104I	CTCTTC	2 cut(s)	537, 609
EarI	CTCTTC	2 cut(s)	537, 609
Eco130I	CCWWGG	2 cut(s)	450, 609
Eco147I	AGGCCT	1 cut(s)	427
Eco24I	GRGCYC	1 cut(s)	624
Eco31I	GGTCTC	1 cut(s)	634
Eco57I	CTGAAG	1 cut(s)	168
EcoRII	CCWGG	1 cut(s)	247
EcoT14I	CCWWGG	2 cut(s)	450, 609
EcoT38I	GRGCYC	1 cut(s)	624
ErhI	CCWWGG	2 cut(s)	450, 609
FaeI	CATG	3 cut(s)	32, 256, 613
FaqI	GGGAC	1 cut(s)	19
FatI	CATG	3 cut(s)	28, 252, 609
Fnu4HI	GCNGC	1 cut(s)	12
FokI	GGATG	1 cut(s)	170
FriOI	GRGCYC	1 cut(s)	624
Fsp4HI	GCNGC	1 cut(s)	12
FspBI	CTAG	1 cut(s)	134
GluI	GCNGC	1 cut(s)	12
HaeIII	GGCC	1 cut(s)	427
HapII	CCGG	1 cut(s)	311
Hin1II	CATG	3 cut(s)	32, 256, 613
HinfI	GANTC	5 cut(s)	17, 116, 176, 220, 287
HpaII	CCGG	1 cut(s)	311
HphI	GGTGA	3 cut(s)	171, 618, 655
Hpy188I	TCNGA	4 cut(s)	63, 275, 331, 409
Hpy188III	TCNNGA	5 cut(s)	85, 134, 173, 301, 345
HpyAV	CCTTC	3 cut(s)	192, 351, 362
HpyCH4III	ACNGT	4 cut(s)	112, 242, 567, 670
HpyCH4V	TGCA	1 cut(s)	14
HpyF3I	CTNAG	4 cut(s)	21, 272, 330, 422
Hsp92II	CATG	3 cut(s)	32, 256, 613
Kzo9I	GATC	4 cut(s)	58, 454, 510, 520
LguI	GCTCTTC	1 cut(s)	537
LweI	GCATC	1 cut(s)	669
MaeI	CTAG	1 cut(s)	134
MaeIII	GTNAC	2 cut(s)	103, 567
MalI	GATC	4 cut(s)	60, 456, 512, 522
MboI	GATC	4 cut(s)	58, 454, 510, 520
MflI	RGATCY	1 cut(s)	510
MhlI	GDGCHC	1 cut(s)	624
MluCI	AATT	4 cut(s)	225, 380, 478, 503
MlyI	GAGTC	1 cut(s)	296
MnlI	CCTC	6 cut(s)	62, 100, 103, 148, 438, 610
MroXI	GAANNNNTTC	1 cut(s)	78
MseI	TTAA	1 cut(s)	389
MslI	CAYNNNNRTG	1 cut(s)	668
MspI	CCGG	1 cut(s)	311
MspR9I	CCNGG	1 cut(s)	249
MvaI	CCWGG	1 cut(s)	249
NcoI	CCATGG	1 cut(s)	609
NdeII	GATC	4 cut(s)	58, 454, 510, 520
NlaIII	CATG	3 cut(s)	32, 256, 613
OliI	CACNNNNGTG	1 cut(s)	668
PceI	AGGCCT	1 cut(s)	427
PciSI	GCTCTTC	1 cut(s)	537
PdmI	GAANNNNTTC	1 cut(s)	78
PfeI	GAWTC	4 cut(s)	17, 116, 176, 220
PinAI	ACCGGT	1 cut(s)	310
PkrI	GCNGC	1 cut(s)	13
PleI	GAGTC	1 cut(s)	295
PpsI	GAGTC	1 cut(s)	295
Psp6I	CCWGG	1 cut(s)	247
PspGI	CCWGG	1 cut(s)	247
PstI	CTGCAG	1 cut(s)	16
PsuI	RGATCY	1 cut(s)	510
RsaI	GTAC	1 cut(s)	592
RsaNI	GTAC	1 cut(s)	591
RseI	CAYNNNNRTG	1 cut(s)	668
SapI	GCTCTTC	1 cut(s)	537
SaqAI	TTAA	1 cut(s)	389
SatI	GCNGC	1 cut(s)	12
Sau3AI	GATC	4 cut(s)	58, 454, 510, 520
ScaI	AGTACT	1 cut(s)	592
SchI	GAGTC	1 cut(s)	296
ScrFI	CCNGG	1 cut(s)	249
SduI	GDGCHC	1 cut(s)	624
SetI	ASST	8 cut(s)	40, 92, 165, 184, 359, 549, 564, 631
SfaNI	GCATC	1 cut(s)	669
SfcI	CTRYAG	2 cut(s)	12, 563
SmiMI	CAYNNNNRTG	1 cut(s)	668
SmlI	CTYRAG	2 cut(s)	83, 299
SmoI	CTYRAG	2 cut(s)	83, 299
Sse9I	AATT	4 cut(s)	225, 380, 478, 503
SseBI	AGGCCT	1 cut(s)	427
SsiI	CCGC	2 cut(s)	581, 601
SspMI	CTAG	1 cut(s)	134
StuI	AGGCCT	1 cut(s)	427
StyD4I	CCNGG	1 cut(s)	247
StyI	CCWWGG	2 cut(s)	450, 609
TaaI	ACNGT	4 cut(s)	112, 242, 567, 670
TasI	AATT	4 cut(s)	225, 380, 478, 503
TatI	WGTACW	1 cut(s)	590
TfiI	GAWTC	4 cut(s)	17, 116, 176, 220
Tru1I	TTAA	1 cut(s)	389
Tru9I	TTAA	1 cut(s)	389
TscAI	CASTG	2 cut(s)	661, 673
TseI	GCWGC	1 cut(s)	11
TspDTI	ATGAA	1 cut(s)	17
TspRI	CASTG	2 cut(s)	661, 673
XapI	RAATTY	2 cut(s)	380, 478
XbaI	TCTAGA	1 cut(s)	133
XmnI	GAANNNNTTC	1 cut(s)	78
XspI	CTAG	1 cut(s)	134
ZrmI	AGTACT	1 cut(s)	592

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.