Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr12

Orthogroup ID

OG0002461

Physical Location & Seq

Genomic Coordinates Forward (+)

12267297 .. 12269249

Gene Structure 1953 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD12G1093500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 672 bp

ATGGGGATGGCTGCCACAGACTCACAGTTCCATGTTCTAGCTGTTGATGACAGCGTCATCGATCGGAAGCTGATCGAGAGGCTCCTCAAGACCTCATCGTACCAAGTTACTACAGTTGATTCTGGTAGTAAGGCTTTAGAGTTTCTGGGTTTGTACGAGGATGCTCAAAGCAGTTCATATTCACCTTCTGTTTCCCCAAACAATCAACAGGAAGTGGGAGTGAATCTTGTAATTACGGACTACTGTATGCCTGGAATGACAGGATATGATTTGCTCAGGAAAATCAAGGAGTCTTCATCTCTGAGGAACATACCTGTTGTGATCATGTCATCTGAGAATGTGCCTTCAAGAATCAACAGATGCTTGGAAGAAGGGGCAGAAGAATTTTTTTTAAAGCCAGTGAGATTATCAGACTTGAGTAGGCTTAGACCCCATTTGATGAAAACCAAGTCCAACAATCAAAACCAAGAAAAACAAGAAGATGAATCTGAAAGCTCAGAGACTCGATCACAGGAGCAGGAGCGGGAGCACCATGAACTAGAACAACAACAACAACCGCAACCGCAACCGCAACCGATACCGCCAAACAGTAACAAGAGGAAGCCCGTGGAAGAGGGGTTTTCACCTGAAAGAACTAGACCAAGATACAGCGGAATCGCCACTCTGGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000156 GO:0000160 GO:0003674 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007154 GO:0007165 GO:0007623 GO:0008150 GO:0009719 GO:0009725 GO:0009735 GO:0009736 GO:0009755 GO:0009889 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0023052 GO:0031323 GO:0031326 GO:0032870 GO:0035556 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048511 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0060089 GO:0060255 GO:0065007 GO:0070887 GO:0071310 GO:0071368 GO:0071495 GO:0080090 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

Response_reg

Protein Analysis

224

Amino Acids

25.25

Weight (kDa)

5.26

Isoelectric Point (pI)

75.86

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Response_reg	PF00072	12 - 139	1.7e-18	Response regulator receiver domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0002461)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G07440 AT2G41310 AT3G57040 AT3G57040
fragaria_vesca	FvH4_6g25290 FvH4_7g02970
malus_domestica	MD02G1288300.v1.1 MD07G1038500.v1.1 MD12G1093500.v1.1 MD14G1086100.v1.1
prunus_persica	Prupe.2G034700_v2.0.a1 Prupe.7G041600_v2.0.a1
pyrus_communis	pycom12g07920 pycom14g07600
rosa_chinensis	RchiOBHm_Chr1g0323961 RchiOBHm_Chr1g0360681 RchiOBHm_Chr2g0125351
rosa_laevigata	RLG00000018858 RLG00000030239
rosa_multiflora	Rmu_sc0002529.1_g000022 Rmu_sc0002631.1_g000008 Rmu_sc0006175.1_g000025 Rmu_sc0006399.1_g000002
rosa_roxburghii	Rroxscaffold_2G00118090 Rroxscaffold_4G00326040
rosa_rugosa	Rorug01G0040800 Rorug02G0256900
rosa_samantha	Rh1AG058100 Rh1AG058700 Rh1BG049200 Rh1BG049700 Rh1CG060700 Rh1DG064600 Rh2AG315100 Rh2BG323200 Rh2CG305500 Rh2DG341800
rosa_wichuraiana	Rw0G023530 Rw1G004980 Rw1G005010 Rw2G025470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	523
AciI	CCGC	6 cut(s)	523, 557, 563, 569, 581, 651
AcsI	RAATTY	1 cut(s)	383
AfaI	GTAC	2 cut(s)	101, 155
AgsI	TTSAA	1 cut(s)	348
AjnI	CCWGG	1 cut(s)	250
AluBI	AGCT	3 cut(s)	41, 70, 495
AluI	AGCT	3 cut(s)	41, 70, 495
Alw21I	GWGCWC	1 cut(s)	531
Alw26I	GTCTC	1 cut(s)	494
ApeKI	GCWGC	1 cut(s)	11
ApoI	RAATTY	1 cut(s)	383
AsuHPI	GGTGA	2 cut(s)	174, 615
BbsI	GAAGAC	1 cut(s)	285
Bbv12I	GWGCWC	1 cut(s)	531
BciT130I	CCWGG	1 cut(s)	252
BclI	TGATCA	1 cut(s)	321
BcoDI	GTCTC	1 cut(s)	494
BfaI	CTAG	3 cut(s)	38, 539, 636
BfmI	CTRYAG	1 cut(s)	111
BisI	GCNGC	1 cut(s)	12
BlsI	GCNGC	1 cut(s)	13
Bme1390I	CCNGG	1 cut(s)	252
BmiI	GGNNCC	1 cut(s)	83
BmrFI	CCNGG	1 cut(s)	252
BmsI	GCATC	2 cut(s)	151, 350
BpiI	GAAGAC	1 cut(s)	285
Bpu10I	CCTNAGC	1 cut(s)	275
BpuEI	CTTGAG	2 cut(s)	71, 436
Bsa29I	ATCGAT	1 cut(s)	60
BsaJI	CCNNGG	1 cut(s)	606
Bse1I	ACTGG	1 cut(s)	398
BseBI	CCWGG	1 cut(s)	252
BseCI	ATCGAT	1 cut(s)	60
BseDI	CCNNGG	1 cut(s)	606
BseGI	GGATG	2 cut(s)	12, 166
BseMII	CTCAG	4 cut(s)	289, 293, 324, 510
BseNI	ACTGG	1 cut(s)	398
BseRI	GAGGAG	1 cut(s)	74
Bsh1285I	CGRYCG	1 cut(s)	64
BshVI	ATCGAT	1 cut(s)	60
BsiEI	CGRYCG	1 cut(s)	64
BsiHKAI	GWGCWC	1 cut(s)	531
BsmAI	GTCTC	1 cut(s)	494
Bsp1286I	GDGCHC	1 cut(s)	531
Bsp143I	GATC	4 cut(s)	61, 72, 321, 506
BspACI	CCGC	6 cut(s)	523, 557, 563, 569, 581, 651
BspCNI	CTCAG	4 cut(s)	288, 294, 325, 509
BspDI	ATCGAT	1 cut(s)	60
BspLI	GGNNCC	1 cut(s)	83
BsrBI	CCGCTC	1 cut(s)	523
BsrI	ACTGG	1 cut(s)	398
BssECI	CCNNGG	1 cut(s)	606
BssMI	GATC	4 cut(s)	61, 72, 321, 506
Bst2UI	CCWGG	1 cut(s)	252
Bst4CI	ACNGT	4 cut(s)	27, 115, 245, 590
Bst6I	CTCTTC	1 cut(s)	606
BstDEI	CTNAG	5 cut(s)	275, 302, 333, 425, 496
BstDSI	CCRYGG	1 cut(s)	606
BstF5I	GGATG	2 cut(s)	12, 166
BstKTI	GATC	4 cut(s)	64, 75, 324, 509
BstMAI	GTCTC	1 cut(s)	494
BstMBI	GATC	4 cut(s)	61, 72, 321, 506
BstMCI	CGRYCG	1 cut(s)	64
BstNI	CCWGG	1 cut(s)	252
BstSCI	CCNGG	1 cut(s)	250
BstSFI	CTRYAG	1 cut(s)	111
BstV2I	GAAGAC	1 cut(s)	285
Bsu15I	ATCGAT	1 cut(s)	60
BsuTUI	ATCGAT	1 cut(s)	60
BtgI	CCRYGG	1 cut(s)	606
BtsCI	GGATG	2 cut(s)	12, 166
BtsIMutI	CAGTG	1 cut(s)	405
ClaI	ATCGAT	1 cut(s)	60
CseI	GACGC	1 cut(s)	43
Csp6I	GTAC	2 cut(s)	100, 154
CviAII	CATG	3 cut(s)	32, 325, 533
CviJI	RGCY	9 cut(s)	11, 41, 70, 82, 134, 397, 424, 495, 604
CviKI_1	RGCY	9 cut(s)	11, 41, 70, 82, 134, 397, 424, 495, 604
CviQI	GTAC	2 cut(s)	100, 154
DdeI	CTNAG	5 cut(s)	275, 302, 333, 425, 496
DpnI	GATC	4 cut(s)	63, 74, 323, 508
DpnII	GATC	4 cut(s)	61, 72, 321, 506
DraI	TTTAAA	1 cut(s)	393
Eam1104I	CTCTTC	1 cut(s)	606
EarI	CTCTTC	1 cut(s)	606
EcoRII	CCWGG	1 cut(s)	250
FaeI	CATG	3 cut(s)	35, 328, 536
FaiI	YATR	7 cut(s)	33, 178, 248, 267, 311, 326, 534
FatI	CATG	3 cut(s)	31, 324, 532
FauI	CCCGC	1 cut(s)	516
FbaI	TGATCA	1 cut(s)	321
Fnu4HI	GCNGC	1 cut(s)	12
FokI	GGATG	2 cut(s)	19, 173
Fsp4HI	GCNGC	1 cut(s)	12
FspBI	CTAG	3 cut(s)	38, 539, 636
GluI	GCNGC	1 cut(s)	12
HgaI	GACGC	1 cut(s)	43
Hin1II	CATG	3 cut(s)	35, 328, 536
HinfI	GANTC	8 cut(s)	20, 119, 223, 290, 351, 485, 502, 654
HphI	GGTGA	2 cut(s)	174, 615
Hpy188I	TCNGA	6 cut(s)	66, 303, 334, 412, 490, 499
Hpy188III	TCNNGA	4 cut(s)	76, 88, 277, 348
HpyAV	CCTTC	3 cut(s)	195, 354, 365
HpyCH4III	ACNGT	4 cut(s)	27, 115, 245, 590
HpyF3I	CTNAG	5 cut(s)	275, 302, 333, 425, 496
Hsp92II	CATG	3 cut(s)	35, 328, 536
Ksp22I	TGATCA	1 cut(s)	321
Kzo9I	GATC	4 cut(s)	61, 72, 321, 506
LmnI	GCTCC	4 cut(s)	87, 514, 520, 526
LweI	GCATC	2 cut(s)	151, 350
MaeI	CTAG	3 cut(s)	38, 539, 636
MaeIII	GTNAC	2 cut(s)	106, 590
MalI	GATC	4 cut(s)	63, 74, 323, 508
MbiI	CCGCTC	1 cut(s)	523
MboI	GATC	4 cut(s)	61, 72, 321, 506
MboII	GAAGA	5 cut(s)	285, 380, 392, 491, 623
MhlI	GDGCHC	1 cut(s)	531
MluCI	AATT	2 cut(s)	231, 383
MlyI	GAGTC	3 cut(s)	14, 299, 496
MmeI	TCCRAC	1 cut(s)	477
MnlI	CCTC	7 cut(s)	72, 95, 103, 151, 297, 591, 607
MseI	TTAA	1 cut(s)	392
MspA1I	CMGCKG	1 cut(s)	651
MspR9I	CCNGG	1 cut(s)	252
MvaI	CCWGG	1 cut(s)	252
NdeII	GATC	4 cut(s)	61, 72, 321, 506
NlaIII	CATG	3 cut(s)	35, 328, 536
NlaIV	GGNNCC	1 cut(s)	83
PfeI	GAWTC	5 cut(s)	119, 223, 351, 485, 654
PflFI	GACNNNGTC	1 cut(s)	53
PkrI	GCNGC	1 cut(s)	13
Ple19I	CGATCG	1 cut(s)	64
PleI	GAGTC	3 cut(s)	14, 298, 496
PpsI	GAGTC	3 cut(s)	14, 298, 496
Psp6I	CCWGG	1 cut(s)	250
PspGI	CCWGG	1 cut(s)	250
PspN4I	GGNNCC	1 cut(s)	83
PsyI	GACNNNGTC	1 cut(s)	53
PvuI	CGATCG	1 cut(s)	64
RsaI	GTAC	2 cut(s)	101, 155
RsaNI	GTAC	2 cut(s)	100, 154
SaqAI	TTAA	1 cut(s)	392
SatI	GCNGC	1 cut(s)	12
Sau3AI	GATC	4 cut(s)	61, 72, 321, 506
SchI	GAGTC	3 cut(s)	14, 299, 496
ScrFI	CCNGG	1 cut(s)	252
SduI	GDGCHC	1 cut(s)	531
SetI	ASST	7 cut(s)	43, 72, 95, 187, 316, 497, 628
SfaNI	GCATC	2 cut(s)	151, 350
SfcI	CTRYAG	1 cut(s)	111
SmlI	CTYRAG	2 cut(s)	86, 415
SmoI	CTYRAG	2 cut(s)	86, 415
Sse9I	AATT	2 cut(s)	231, 383
SsiI	CCGC	6 cut(s)	523, 557, 563, 569, 581, 651
SspMI	CTAG	3 cut(s)	38, 539, 636
StyD4I	CCNGG	1 cut(s)	250
TaaI	ACNGT	4 cut(s)	27, 115, 245, 590
TaqI	TCGA	3 cut(s)	60, 75, 505
TasI	AATT	2 cut(s)	231, 383
TfiI	GAWTC	5 cut(s)	119, 223, 351, 485, 654
Tru1I	TTAA	1 cut(s)	392
Tru9I	TTAA	1 cut(s)	392
TscAI	CASTG	1 cut(s)	405
TseI	GCWGC	1 cut(s)	11
TspDTI	ATGAA	5 cut(s)	165, 285, 455, 498, 549
TspGWI	ACGGA	1 cut(s)	251
TspRI	CASTG	1 cut(s)	405
Tth111I	GACNNNGTC	1 cut(s)	53
XapI	RAATTY	1 cut(s)	383
XspI	CTAG	3 cut(s)	38, 539, 636

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.