Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0002461

Physical Location & Seq

Genomic Coordinates Reverse (-)

58074184 .. 58075906

Gene Structure 1723 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00326040.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 564 bp

ATGGGTGTGGGAGCTGCAGAGGGCCAGTTTCATGTTCTGGCTGTTGATGATAGCATCATTGACAGAAAGTTGATTGAGAGACTTCTCAAGACTTCTTCTTATCAAGTTACTGCTGTAGATTCTGGTATTAAGGCTTTACAATTTTTGGGTTTGAATGATGAAGAGGATCAAAGTGATATTGCAGAAGCTCCTTCTGTGTCTCCAAACAATCATCATCAGGATGTAGATGTGAATTTGATCATTACAGATTACTGCATGCCAGGAATGACAGGCTATGATCTCCTCAGAAAGATTAAGGAATCCAAGTCTCTTAAAGACATACCAGTTGTTATCATGTCCTCAGAGAATGAACCATCAAGGATCAACAGATGCTTAGAGGAAGGAGCAGAAGAGTTCTTTCTGAAACCAGTAAAATTGTCAGATGTCAACAAGCTTAGACCCCATATGATGAAGGGTACAAGTATGGAAGACGAAGGCAACATCAACGAGGGAAAGGCCATGGAAGAAATCCAAACACCTGAGAGAACTAGAACAATATATAATGGCTTTGATGTGCTTTCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000156 GO:0000160 GO:0003674 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007154 GO:0007165 GO:0007623 GO:0008150 GO:0009719 GO:0009725 GO:0009735 GO:0009736 GO:0009755 GO:0009889 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0023052 GO:0031323 GO:0031326 GO:0032870 GO:0035556 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048511 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0060089 GO:0060255 GO:0065007 GO:0070887 GO:0071310 GO:0071368 GO:0071495 GO:0080090 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

Response_reg

Protein Analysis

187

Amino Acids

20.86

Weight (kDa)

4.71

Isoelectric Point (pI)

45.33

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Response_reg	PF00072	12 - 142	8.3e-18	Response regulator receiver domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002461)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G07440 AT2G41310 AT3G57040 AT3G57040
fragaria_vesca	FvH4_6g25290 FvH4_7g02970
malus_domestica	MD02G1288300.v1.1 MD07G1038500.v1.1 MD12G1093500.v1.1 MD14G1086100.v1.1
prunus_persica	Prupe.2G034700_v2.0.a1 Prupe.7G041600_v2.0.a1
pyrus_communis	pycom12g07920 pycom14g07600
rosa_chinensis	RchiOBHm_Chr1g0323961 RchiOBHm_Chr1g0360681 RchiOBHm_Chr2g0125351
rosa_laevigata	RLG00000018858 RLG00000030239
rosa_multiflora	Rmu_sc0002529.1_g000022 Rmu_sc0002631.1_g000008 Rmu_sc0006175.1_g000025 Rmu_sc0006399.1_g000002
rosa_roxburghii	Rroxscaffold_2G00118090 Rroxscaffold_4G00326040
rosa_rugosa	Rorug01G0040800 Rorug02G0256900
rosa_samantha	Rh1AG058100 Rh1AG058700 Rh1BG049200 Rh1BG049700 Rh1CG060700 Rh1DG064600 Rh2AG315100 Rh2BG323200 Rh2CG305500 Rh2DG341800
rosa_wichuraiana	Rw0G023530 Rw1G004980 Rw1G005010 Rw2G025470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	174, 368
AcsI	RAATTY	1 cut(s)	232
AfaI	GTAC	1 cut(s)	457
AgsI	TTSAA	1 cut(s)	154
AjnI	CCWGG	1 cut(s)	259
AluBI	AGCT	3 cut(s)	14, 188, 433
AluI	AGCT	3 cut(s)	14, 188, 433
Alw26I	GTCTC	3 cut(s)	73, 204, 312
AlwI	GGATC	2 cut(s)	174, 368
AoxI	GGCC	2 cut(s)	22, 495
ApeKI	GCWGC	1 cut(s)	14
ApoI	RAATTY	1 cut(s)	232
AspS9I	GGNCC	1 cut(s)	22
BbsI	GAAGAC	1 cut(s)	474
BccI	CCATC	1 cut(s)	361
BciT130I	CCWGG	1 cut(s)	261
BclI	TGATCA	1 cut(s)	237
BcoDI	GTCTC	3 cut(s)	73, 204, 312
BfaI	CTAG	1 cut(s)	528
BfmI	CTRYAG	2 cut(s)	15, 114
BisI	GCNGC	1 cut(s)	15
BlsI	GCNGC	1 cut(s)	16
Bme1390I	CCNGG	1 cut(s)	261
BmgT120I	GGNCC	1 cut(s)	22
BmrFI	CCNGG	1 cut(s)	261
BmsI	GCATC	2 cut(s)	63, 359
BpiI	GAAGAC	1 cut(s)	474
BpuEI	CTTGAG	1 cut(s)	71
BsaJI	CCNNGG	1 cut(s)	498
Bse1I	ACTGG	3 cut(s)	25, 323, 407
BseBI	CCWGG	1 cut(s)	261
BseDI	CCNNGG	1 cut(s)	498
BseGI	GGATG	1 cut(s)	226
BseMII	CTCAG	3 cut(s)	298, 354, 510
BseNI	ACTGG	3 cut(s)	25, 323, 407
BseRI	GAGGAG	1 cut(s)	272
BshFI	GGCC	2 cut(s)	24, 497
BsmAI	GTCTC	3 cut(s)	73, 204, 312
BsnI	GGCC	2 cut(s)	24, 497
Bsp143I	GATC	4 cut(s)	166, 237, 277, 360
Bsp19I	CCATGG	1 cut(s)	498
BspANI	GGCC	2 cut(s)	24, 497
BspCNI	CTCAG	3 cut(s)	297, 353, 511
BspHI	TCATGA	1 cut(s)	560
BspMAI	CTGCAG	1 cut(s)	19
BspPI	GGATC	2 cut(s)	174, 368
BsrI	ACTGG	3 cut(s)	25, 323, 407
BssECI	CCNNGG	1 cut(s)	498
BssMI	GATC	4 cut(s)	166, 237, 277, 360
BssT1I	CCWWGG	1 cut(s)	498
Bst2UI	CCWGG	1 cut(s)	261
Bst6I	CTCTTC	2 cut(s)	156, 384
BstC8I	GCNNGC	1 cut(s)	257
BstDEI	CTNAG	5 cut(s)	284, 340, 373, 434, 519
BstDSI	CCRYGG	1 cut(s)	498
BstF5I	GGATG	1 cut(s)	226
BstKTI	GATC	4 cut(s)	169, 240, 280, 363
BstMAI	GTCTC	3 cut(s)	73, 204, 312
BstMBI	GATC	4 cut(s)	166, 237, 277, 360
BstNI	CCWGG	1 cut(s)	261
BstNSI	RCATGY	1 cut(s)	259
BstSCI	CCNGG	1 cut(s)	259
BstSFI	CTRYAG	2 cut(s)	15, 114
BstV2I	GAAGAC	1 cut(s)	474
BsuRI	GGCC	2 cut(s)	24, 497
BtgI	CCRYGG	1 cut(s)	498
BtsCI	GGATG	1 cut(s)	226
Cac8I	GCNNGC	1 cut(s)	257
CciI	TCATGA	1 cut(s)	560
Cfr13I	GGNCC	1 cut(s)	22
Csp6I	GTAC	1 cut(s)	456
CviAII	CATG	5 cut(s)	32, 256, 334, 499, 561
CviJI	RGCY	9 cut(s)	14, 24, 41, 134, 188, 273, 433, 497, 546
CviKI_1	RGCY	9 cut(s)	14, 24, 41, 134, 188, 273, 433, 497, 546
CviQI	GTAC	1 cut(s)	456
DdeI	CTNAG	5 cut(s)	284, 340, 373, 434, 519
DpnI	GATC	4 cut(s)	168, 239, 279, 362
DpnII	GATC	4 cut(s)	166, 237, 277, 360
Eam1104I	CTCTTC	2 cut(s)	156, 384
EarI	CTCTTC	2 cut(s)	156, 384
Eco130I	CCWWGG	1 cut(s)	498
EcoRII	CCWGG	1 cut(s)	259
EcoT14I	CCWWGG	1 cut(s)	498
ErhI	CCWWGG	1 cut(s)	498
FaeI	CATG	5 cut(s)	35, 259, 337, 502, 564
FatI	CATG	5 cut(s)	31, 255, 333, 498, 560
FauNDI	CATATG	1 cut(s)	444
FbaI	TGATCA	1 cut(s)	237
Fnu4HI	GCNGC	1 cut(s)	15
FokI	GGATG	1 cut(s)	233
Fsp4HI	GCNGC	1 cut(s)	15
FspBI	CTAG	1 cut(s)	528
GluI	GCNGC	1 cut(s)	15
HaeIII	GGCC	2 cut(s)	24, 497
Hin1II	CATG	5 cut(s)	35, 259, 337, 502, 564
HincII	GTYRAC	1 cut(s)	427
HindII	GTYRAC	1 cut(s)	427
HindIII	AAGCTT	1 cut(s)	431
HinfI	GANTC	2 cut(s)	119, 299
Hpy166II	GTNNAC	1 cut(s)	427
Hpy188I	TCNGA	4 cut(s)	287, 343, 402, 421
Hpy188III	TCNNGA	3 cut(s)	88, 218, 561
Hpy8I	GTNNAC	1 cut(s)	427
HpyAV	CCTTC	4 cut(s)	201, 374, 445, 467
HpyCH4V	TGCA	3 cut(s)	17, 182, 255
HpyF3I	CTNAG	5 cut(s)	284, 340, 373, 434, 519
Hsp92II	CATG	5 cut(s)	35, 259, 337, 502, 564
Ksp22I	TGATCA	1 cut(s)	237
Kzo9I	GATC	4 cut(s)	166, 237, 277, 360
LmnI	GCTCC	3 cut(s)	11, 193, 383
LweI	GCATC	2 cut(s)	63, 359
MaeI	CTAG	1 cut(s)	528
MaeIII	GTNAC	1 cut(s)	106
MalI	GATC	4 cut(s)	168, 239, 279, 362
MboI	GATC	4 cut(s)	166, 237, 277, 360
MboII	GAAGA	5 cut(s)	87, 173, 401, 479, 515
MluCI	AATT	3 cut(s)	140, 232, 413
MnlI	CCTC	6 cut(s)	13, 157, 293, 349, 370, 481
MseI	TTAA	3 cut(s)	129, 294, 312
MslI	CAYNNNNRTG	1 cut(s)	219
MspR9I	CCNGG	1 cut(s)	261
MvaI	CCWGG	1 cut(s)	261
NcoI	CCATGG	1 cut(s)	498
NdeI	CATATG	1 cut(s)	444
NdeII	GATC	4 cut(s)	166, 237, 277, 360
NlaIII	CATG	5 cut(s)	35, 259, 337, 502, 564
NspI	RCATGY	1 cut(s)	259
PaeI	GCATGC	1 cut(s)	259
PagI	TCATGA	1 cut(s)	560
PfeI	GAWTC	2 cut(s)	119, 299
PkrI	GCNGC	1 cut(s)	16
Psp6I	CCWGG	1 cut(s)	259
PspGI	CCWGG	1 cut(s)	259
PspPI	GGNCC	1 cut(s)	22
PstI	CTGCAG	1 cut(s)	19
RsaI	GTAC	1 cut(s)	457
RsaNI	GTAC	1 cut(s)	456
RseI	CAYNNNNRTG	1 cut(s)	219
SaqAI	TTAA	3 cut(s)	129, 294, 312
SatI	GCNGC	1 cut(s)	15
Sau3AI	GATC	4 cut(s)	166, 237, 277, 360
Sau96I	GGNCC	1 cut(s)	22
ScrFI	CCNGG	1 cut(s)	261
SetI	ASST	4 cut(s)	16, 190, 435, 520
SfaNI	GCATC	2 cut(s)	63, 359
SfcI	CTRYAG	2 cut(s)	15, 114
SmiMI	CAYNNNNRTG	1 cut(s)	219
SmlI	CTYRAG	1 cut(s)	86
SmoI	CTYRAG	1 cut(s)	86
SphI	GCATGC	1 cut(s)	259
Sse9I	AATT	3 cut(s)	140, 232, 413
SspMI	CTAG	1 cut(s)	528
StyD4I	CCNGG	1 cut(s)	259
StyI	CCWWGG	1 cut(s)	498
TasI	AATT	3 cut(s)	140, 232, 413
TfiI	GAWTC	2 cut(s)	119, 299
Tru1I	TTAA	3 cut(s)	129, 294, 312
Tru9I	TTAA	3 cut(s)	129, 294, 312
TseI	GCWGC	1 cut(s)	14
TspDTI	ATGAA	5 cut(s)	20, 174, 363, 464, 549
XapI	RAATTY	1 cut(s)	232
XceI	RCATGY	1 cut(s)	259
XspI	CTAG	1 cut(s)	528

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.