Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0002461

Physical Location & Seq

Genomic Coordinates Forward (+)

21109059 .. 21111567

Gene Structure 2509 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G57040.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 705 bp

ATGGGTATGGCAGCAGAATCGCAGTTTCATGTTTTAGCTGTTGATGATAGTTTATTTGATCGGAAACTTATTGAGAGATTGCTTCAAAAGTCTTCGTGTCAAGTAACAACTGTTGATTCTGGCTCAAAGGCTTTGGAGTTTCTGGGTTTAAGACAAAGTACTGATAGTAACGACCCAAATGCGTTTTCTAAGGCTCCTGTTAATCACCAGGTAGTTGAAGTGAATCTTATAATTACAGATTATTGTATGCCTGGCATGACTGGTTATGATTTGCTCAAGAAAGTCAAGGAATCATCAGCTTTTAGAGATATACCAGTAGTTATCATGTCCTCAGAGAACGTTCCTGCAAGAATCAGCAGATGTTTAGAAGAAGGAGCTGAAGAGTTTTTCTTGAAACCAGTAAGATTGGCTGATCTTAACAAGTTGAAACCTCATATGATGAAAACAAAGTTGAAGAACCAGAAGCTGGAGGAGATTGAGACAACTTCAAAAGTCGAAAATGGAGTCCCCACTGCAGTAGCTGATCCAGAGATTAAAGATTCAACAAACATTGAAATTGAAATCTTGCCTCTGCAACAAGATCTGCTATTAGTTCAACAAGAGGAGCAAACATTGAGTATCAACAACAAGAGGAAGTCAGTGGAAGAAGGGATTTCAACTGATAGAGCACGTCCTAGATTCGACGGTATCGCAACCGCTGTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000156 GO:0000160 GO:0003674 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007154 GO:0007165 GO:0007623 GO:0008150 GO:0009719 GO:0009725 GO:0009735 GO:0009736 GO:0009755 GO:0009889 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0023052 GO:0031323 GO:0031326 GO:0032870 GO:0035556 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048511 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0060089 GO:0060255 GO:0065007 GO:0070887 GO:0071310 GO:0071368 GO:0071495 GO:0080090 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

Response_reg

Protein Analysis

234

Amino Acids

26.09

Weight (kDa)

5.17

Isoelectric Point (pI)

59.08

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Response_reg	PF00072	11 - 141	3.6e-17	Response regulator receiver domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002461)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G07440 AT2G41310 AT3G57040 AT3G57040
fragaria_vesca	FvH4_6g25290 FvH4_7g02970
malus_domestica	MD02G1288300.v1.1 MD07G1038500.v1.1 MD12G1093500.v1.1 MD14G1086100.v1.1
prunus_persica	Prupe.2G034700_v2.0.a1 Prupe.7G041600_v2.0.a1
pyrus_communis	pycom12g07920 pycom14g07600
rosa_chinensis	RchiOBHm_Chr1g0323961 RchiOBHm_Chr1g0360681 RchiOBHm_Chr2g0125351
rosa_laevigata	RLG00000018858 RLG00000030239
rosa_multiflora	Rmu_sc0002529.1_g000022 Rmu_sc0002631.1_g000008 Rmu_sc0006175.1_g000025 Rmu_sc0006399.1_g000002
rosa_roxburghii	Rroxscaffold_2G00118090 Rroxscaffold_4G00326040
rosa_rugosa	Rorug01G0040800 Rorug02G0256900
rosa_samantha	Rh1AG058100 Rh1AG058700 Rh1BG049200 Rh1BG049700 Rh1CG060700 Rh1DG064600 Rh2AG315100 Rh2BG323200 Rh2CG305500 Rh2DG341800
rosa_wichuraiana	Rw0G023530 Rw1G004980 Rw1G005010 Rw2G025470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	230
AccB7I	CCANNNNNTGG	1 cut(s)	466
AciI	CCGC	1 cut(s)	696
AclI	AACGTT	1 cut(s)	339
AclWI	GGATC	1 cut(s)	518
AcuI	CTGAAG	1 cut(s)	399
AfaI	GTAC	1 cut(s)	160
AfiI	CCNNNNNNNGG	1 cut(s)	466
AjiI	CACGTC	1 cut(s)	671
AjnI	CCWGG	2 cut(s)	207, 250
AjuI	GAANNNNNNNTTGG	2 cut(s)	169, 201
AluBI	AGCT	5 cut(s)	38, 299, 377, 466, 521
AluI	AGCT	5 cut(s)	38, 299, 377, 466, 521
Alw21I	GWGCWC	1 cut(s)	670
Alw26I	GTCTC	1 cut(s)	473
AlwI	GGATC	1 cut(s)	518
AlwNI	CAGNNNCTG	2 cut(s)	466, 521
ApeKI	GCWGC	1 cut(s)	11
ArsI	GACNNNNNNTTYG	2 cut(s)	489, 521
AsuHPI	GGTGA	1 cut(s)	197
BbsI	GAAGAC	1 cut(s)	84
Bbv12I	GWGCWC	1 cut(s)	670
BbvI	GCAGC	1 cut(s)	23
BcgI	CGANNNNNNTGC	3 cut(s)	34, 161, 195
BciT130I	CCWGG	2 cut(s)	209, 252
BcoDI	GTCTC	1 cut(s)	473
BfaI	CTAG	1 cut(s)	675
BfmI	CTRYAG	1 cut(s)	513
BglII	AGATCT	1 cut(s)	580
BisI	GCNGC	1 cut(s)	12
BlsI	GCNGC	1 cut(s)	13
BmcAI	AGTACT	1 cut(s)	160
Bme1390I	CCNGG	2 cut(s)	209, 252
BmgBI	CACGTC	1 cut(s)	671
BmiI	GGNNCC	1 cut(s)	195
BmrFI	CCNGG	2 cut(s)	209, 252
BpiI	GAAGAC	1 cut(s)	84
BpmI	CTGGAG	1 cut(s)	488
BpuEI	CTTGAG	1 cut(s)	260
Bsc4I	CCNNNNNNNGG	1 cut(s)	466
Bse1I	ACTGG	3 cut(s)	265, 314, 398
BseBI	CCWGG	2 cut(s)	209, 252
BseLI	CCNNNNNNNGG	1 cut(s)	466
BseMII	CTCAG	1 cut(s)	345
BseNI	ACTGG	3 cut(s)	265, 314, 398
BseRI	GAGGAG	2 cut(s)	485, 617
BseXI	GCAGC	1 cut(s)	23
BsiHKAI	GWGCWC	1 cut(s)	670
BslFI	GGGAC	1 cut(s)	491
BslI	CCNNNNNNNGG	1 cut(s)	466
BsmAI	GTCTC	1 cut(s)	473
BsmFI	GGGAC	1 cut(s)	491
Bsp1286I	GDGCHC	1 cut(s)	670
Bsp143I	GATC	4 cut(s)	58, 412, 523, 580
BspACI	CCGC	1 cut(s)	696
BspCNI	CTCAG	1 cut(s)	344
BspLI	GGNNCC	1 cut(s)	195
BspMAI	CTGCAG	1 cut(s)	517
BspPI	GGATC	1 cut(s)	518
BsrI	ACTGG	3 cut(s)	265, 314, 398
BssMI	GATC	4 cut(s)	58, 412, 523, 580
Bst2UI	CCWGG	2 cut(s)	209, 252
Bst4CI	ACNGT	2 cut(s)	112, 686
Bst6I	CTCTTC	1 cut(s)	375
BstDEI	CTNAG	2 cut(s)	189, 331
BstKTI	GATC	4 cut(s)	61, 415, 526, 583
BstMAI	GTCTC	1 cut(s)	473
BstMBI	GATC	4 cut(s)	58, 412, 523, 580
BstNI	CCWGG	2 cut(s)	209, 252
BstSCI	CCNGG	2 cut(s)	207, 250
BstSFI	CTRYAG	1 cut(s)	513
BstV1I	GCAGC	1 cut(s)	23
BstV2I	GAAGAC	1 cut(s)	84
BstX2I	RGATCY	1 cut(s)	580
BstYI	RGATCY	1 cut(s)	580
BtrI	CACGTC	1 cut(s)	671
BtsI	GCAGTG	1 cut(s)	510
BtsIMutI	CAGTG	2 cut(s)	510, 645
CaiI	CAGNNNCTG	2 cut(s)	466, 521
CsiI	ACCWGGT	1 cut(s)	207
Csp6I	GTAC	1 cut(s)	159
CviAII	CATG	3 cut(s)	29, 256, 325
CviJI	RGCY	9 cut(s)	38, 123, 131, 194, 299, 377, 410, 466, 521
CviKI_1	RGCY	9 cut(s)	38, 123, 131, 194, 299, 377, 410, 466, 521
CviQI	GTAC	1 cut(s)	159
DdeI	CTNAG	2 cut(s)	189, 331
DpnI	GATC	4 cut(s)	60, 414, 525, 582
DpnII	GATC	4 cut(s)	58, 412, 523, 580
Eam1104I	CTCTTC	1 cut(s)	375
EarI	CTCTTC	1 cut(s)	375
Eco57I	CTGAAG	1 cut(s)	399
EcoRII	CCWGG	2 cut(s)	207, 250
FaeI	CATG	3 cut(s)	32, 259, 328
FalI	AAGNNNNNCTT	2 cut(s)	210, 242
FaqI	GGGAC	1 cut(s)	491
FatI	CATG	3 cut(s)	28, 255, 324
FauNDI	CATATG	1 cut(s)	435
Fnu4HI	GCNGC	1 cut(s)	12
Fsp4HI	GCNGC	1 cut(s)	12
FspBI	CTAG	1 cut(s)	675
GluI	GCNGC	1 cut(s)	12
GsuI	CTGGAG	1 cut(s)	488
Hin1II	CATG	3 cut(s)	32, 259, 328
HinfI	GANTC	8 cut(s)	17, 116, 223, 290, 351, 504, 539, 678
HphI	GGTGA	1 cut(s)	197
Hpy188I	TCNGA	3 cut(s)	63, 334, 704
Hpy188III	TCNNGA	3 cut(s)	277, 391, 527
Hpy99I	CGWCG	1 cut(s)	686
HpyAV	CCTTC	2 cut(s)	365, 641
HpyCH4III	ACNGT	2 cut(s)	112, 686
HpyCH4IV	ACGT	2 cut(s)	339, 670
HpyCH4V	TGCA	3 cut(s)	347, 515, 574
HpyF3I	CTNAG	2 cut(s)	189, 331
HpySE526I	ACGT	2 cut(s)	339, 670
Hsp92II	CATG	3 cut(s)	32, 259, 328
Kzo9I	GATC	4 cut(s)	58, 412, 523, 580
LmnI	GCTCC	3 cut(s)	199, 374, 604
Lsp1109I	GCAGC	1 cut(s)	23
MabI	ACCWGGT	1 cut(s)	207
MaeI	CTAG	1 cut(s)	675
MaeII	ACGT	2 cut(s)	339, 670
MaeIII	GTNAC	2 cut(s)	103, 167
MalI	GATC	4 cut(s)	60, 414, 525, 582
MboI	GATC	4 cut(s)	58, 412, 523, 580
MboII	GAAGA	5 cut(s)	84, 380, 392, 466, 656
MflI	RGATCY	1 cut(s)	580
MhlI	GDGCHC	1 cut(s)	670
MluCI	AATT	2 cut(s)	231, 555
MlyI	GAGTC	1 cut(s)	513
MnlI	CCTC	6 cut(s)	340, 441, 463, 579, 595, 624
MseI	TTAA	4 cut(s)	149, 201, 417, 534
MspA1I	CMGCKG	1 cut(s)	698
MspR9I	CCNGG	2 cut(s)	209, 252
MvaI	CCWGG	2 cut(s)	209, 252
NdeI	CATATG	1 cut(s)	435
NdeII	GATC	4 cut(s)	58, 412, 523, 580
NlaIII	CATG	3 cut(s)	32, 259, 328
NlaIV	GGNNCC	1 cut(s)	195
PfeI	GAWTC	7 cut(s)	17, 116, 223, 290, 351, 539, 678
PflMI	CCANNNNNTGG	1 cut(s)	466
PkrI	GCNGC	1 cut(s)	13
PleI	GAGTC	1 cut(s)	512
PpsI	GAGTC	1 cut(s)	512
PsiI	TTATAA	1 cut(s)	230
Psp1406I	AACGTT	1 cut(s)	339
Psp6I	CCWGG	2 cut(s)	207, 250
PspGI	CCWGG	2 cut(s)	207, 250
PspN4I	GGNNCC	1 cut(s)	195
PstI	CTGCAG	1 cut(s)	517
PstNI	CAGNNNCTG	2 cut(s)	466, 521
PsuI	RGATCY	1 cut(s)	580
RsaI	GTAC	1 cut(s)	160
RsaNI	GTAC	1 cut(s)	159
SaqAI	TTAA	4 cut(s)	149, 201, 417, 534
SatI	GCNGC	1 cut(s)	12
Sau3AI	GATC	4 cut(s)	58, 412, 523, 580
ScaI	AGTACT	1 cut(s)	160
SchI	GAGTC	1 cut(s)	513
ScrFI	CCNGG	2 cut(s)	209, 252
SduI	GDGCHC	1 cut(s)	670
SetI	ASST	9 cut(s)	40, 213, 301, 342, 379, 433, 468, 523, 673
SexAI	ACCWGGT	1 cut(s)	207
SfcI	CTRYAG	1 cut(s)	513
SmlI	CTYRAG	1 cut(s)	275
SmoI	CTYRAG	1 cut(s)	275
Sse9I	AATT	2 cut(s)	231, 555
SsiI	CCGC	1 cut(s)	696
SspMI	CTAG	1 cut(s)	675
StyD4I	CCNGG	2 cut(s)	207, 250
TaaI	ACNGT	2 cut(s)	112, 686
TaiI	ACGT	2 cut(s)	342, 673
TaqI	TCGA	2 cut(s)	495, 681
TasI	AATT	2 cut(s)	231, 555
TatI	WGTACW	1 cut(s)	158
TfiI	GAWTC	7 cut(s)	17, 116, 223, 290, 351, 539, 678
Tru1I	TTAA	4 cut(s)	149, 201, 417, 534
Tru9I	TTAA	4 cut(s)	149, 201, 417, 534
TscAI	CASTG	2 cut(s)	517, 645
TseI	GCWGC	1 cut(s)	11
TspDTI	ATGAA	2 cut(s)	17, 455
TspRI	CASTG	2 cut(s)	517, 645
Van91I	CCANNNNNTGG	1 cut(s)	466
XspI	CTAG	1 cut(s)	675
ZrmI	AGTACT	1 cut(s)	160

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.