Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1D

Orthogroup ID

OG0002461

Physical Location & Seq

Genomic Coordinates Forward (+)

11507998 .. 11509940

Gene Structure 1943 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1DG064600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 423 bp

ATGGGTGTGAGAGCTGCAGAGGCCCAGTTTCATGTTCTGGCTGTTGATGATAGCATCATTGACAGAAAGTTGATTGAGAGACTTCTCAAGACTTCTTCTTATCAAGTTACTGCTGTAGATTCTGGTATTAAGGCTTTAGAATTTTTGGGTTTGAATGATGAAGAGGATCAAAGTGATATTGCAGAAGCTCCTTCTGTGTCTCCAAACAATCATCATCAGGATGTAGATGTGAATTTGATCATTACAGATTACTGCATGCCAGGAATGACAGGCTATGATCTCCTCAGAAAGATTAAGGAATCCAAGTCTCTTAAAGACATACCGGTTGTTATCATGTCCTCAGAGAATGAACCATCAAGGATCAACAGGTTAGGGGAATTTTCAATTATGTTCCTCCTGAAACTTCCAATTTGGAACATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000156 GO:0000160 GO:0003674 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007154 GO:0007165 GO:0007623 GO:0008150 GO:0009719 GO:0009725 GO:0009735 GO:0009736 GO:0009755 GO:0009889 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0023052 GO:0031323 GO:0031326 GO:0032870 GO:0035556 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048511 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0060089 GO:0060255 GO:0065007 GO:0070887 GO:0071310 GO:0071368 GO:0071495 GO:0080090 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

Response_reg

Protein Analysis

140

Amino Acids

15.7

Weight (kDa)

4.77

Isoelectric Point (pI)

44.94

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Response_reg	PF00072	71 - 124	1.8e-09	Response regulator receiver domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0002461)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G07440 AT2G41310 AT3G57040 AT3G57040
fragaria_vesca	FvH4_6g25290 FvH4_7g02970
malus_domestica	MD02G1288300.v1.1 MD07G1038500.v1.1 MD12G1093500.v1.1 MD14G1086100.v1.1
prunus_persica	Prupe.2G034700_v2.0.a1 Prupe.7G041600_v2.0.a1
pyrus_communis	pycom12g07920 pycom14g07600
rosa_chinensis	RchiOBHm_Chr1g0323961 RchiOBHm_Chr1g0360681 RchiOBHm_Chr2g0125351
rosa_laevigata	RLG00000018858 RLG00000030239
rosa_multiflora	Rmu_sc0002529.1_g000022 Rmu_sc0002631.1_g000008 Rmu_sc0006175.1_g000025 Rmu_sc0006399.1_g000002
rosa_roxburghii	Rroxscaffold_2G00118090 Rroxscaffold_4G00326040
rosa_rugosa	Rorug01G0040800 Rorug02G0256900
rosa_samantha	Rh1AG058100 Rh1AG058700 Rh1BG049200 Rh1BG049700 Rh1CG060700 Rh1DG064600 Rh2AG315100 Rh2BG323200 Rh2CG305500 Rh2DG341800
rosa_wichuraiana	Rw0G023530 Rw1G004980 Rw1G005010 Rw2G025470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	174, 368
AcsI	RAATTY	3 cut(s)	140, 232, 377
AgeI	ACCGGT	1 cut(s)	322
AgsI	TTSAA	2 cut(s)	154, 384
AjnI	CCWGG	1 cut(s)	259
AluBI	AGCT	2 cut(s)	14, 188
AluI	AGCT	2 cut(s)	14, 188
Alw26I	GTCTC	3 cut(s)	73, 204, 312
AlwI	GGATC	2 cut(s)	174, 368
AoxI	GGCC	1 cut(s)	21
ApeKI	GCWGC	1 cut(s)	14
ApoI	RAATTY	3 cut(s)	140, 232, 377
AsiGI	ACCGGT	1 cut(s)	322
AspS9I	GGNCC	1 cut(s)	22
BccI	CCATC	1 cut(s)	361
BciT130I	CCWGG	1 cut(s)	261
BclI	TGATCA	1 cut(s)	237
BcoDI	GTCTC	3 cut(s)	73, 204, 312
BfmI	CTRYAG	2 cut(s)	15, 114
BisI	GCNGC	1 cut(s)	15
BlsI	GCNGC	1 cut(s)	16
Bme1390I	CCNGG	1 cut(s)	261
BmgT120I	GGNCC	1 cut(s)	22
BmrFI	CCNGG	1 cut(s)	261
BmrI	ACTGGG	1 cut(s)	19
BmsI	GCATC	1 cut(s)	63
BmuI	ACTGGG	1 cut(s)	19
BpuEI	CTTGAG	1 cut(s)	71
BsaWI	WCCGGW	1 cut(s)	322
Bse118I	RCCGGY	1 cut(s)	322
Bse1I	ACTGG	1 cut(s)	25
BseBI	CCWGG	1 cut(s)	261
BseGI	GGATG	1 cut(s)	226
BseMII	CTCAG	2 cut(s)	298, 354
BseNI	ACTGG	1 cut(s)	25
BseRI	GAGGAG	1 cut(s)	272
BshFI	GGCC	1 cut(s)	23
BshTI	ACCGGT	1 cut(s)	322
BsiSI	CCGG	1 cut(s)	323
BsmAI	GTCTC	3 cut(s)	73, 204, 312
BsnI	GGCC	1 cut(s)	23
Bsp143I	GATC	4 cut(s)	166, 237, 277, 360
BspANI	GGCC	1 cut(s)	23
BspCNI	CTCAG	2 cut(s)	297, 353
BspMAI	CTGCAG	1 cut(s)	19
BspPI	GGATC	2 cut(s)	174, 368
BsrFI	RCCGGY	1 cut(s)	322
BsrI	ACTGG	1 cut(s)	25
BssAI	RCCGGY	1 cut(s)	322
BssMI	GATC	4 cut(s)	166, 237, 277, 360
Bst2UI	CCWGG	1 cut(s)	261
Bst6I	CTCTTC	1 cut(s)	156
BstC8I	GCNNGC	1 cut(s)	257
BstDEI	CTNAG	2 cut(s)	284, 340
BstF5I	GGATG	1 cut(s)	226
BstKTI	GATC	4 cut(s)	169, 240, 280, 363
BstMAI	GTCTC	3 cut(s)	73, 204, 312
BstMBI	GATC	4 cut(s)	166, 237, 277, 360
BstMWI	GCNNNNNNNGC	1 cut(s)	20
BstNI	CCWGG	1 cut(s)	261
BstNSI	RCATGY	1 cut(s)	259
BstSCI	CCNGG	1 cut(s)	259
BstSFI	CTRYAG	2 cut(s)	15, 114
BsuRI	GGCC	1 cut(s)	23
BtsCI	GGATG	1 cut(s)	226
Cac8I	GCNNGC	1 cut(s)	257
Cfr10I	RCCGGY	1 cut(s)	322
Cfr13I	GGNCC	1 cut(s)	22
CspAI	ACCGGT	1 cut(s)	322
CviAII	CATG	3 cut(s)	32, 256, 334
CviJI	RGCY	6 cut(s)	14, 23, 41, 134, 188, 273
CviKI_1	RGCY	6 cut(s)	14, 23, 41, 134, 188, 273
DdeI	CTNAG	2 cut(s)	284, 340
DpnI	GATC	4 cut(s)	168, 239, 279, 362
DpnII	GATC	4 cut(s)	166, 237, 277, 360
Eam1104I	CTCTTC	1 cut(s)	156
EarI	CTCTTC	1 cut(s)	156
EcoRII	CCWGG	1 cut(s)	259
FaeI	CATG	3 cut(s)	35, 259, 337
FaiI	YATR	6 cut(s)	33, 257, 276, 320, 335, 389
FatI	CATG	3 cut(s)	31, 255, 333
FbaI	TGATCA	1 cut(s)	237
Fnu4HI	GCNGC	1 cut(s)	15
FokI	GGATG	1 cut(s)	233
Fsp4HI	GCNGC	1 cut(s)	15
GluI	GCNGC	1 cut(s)	15
HaeIII	GGCC	1 cut(s)	23
HapII	CCGG	1 cut(s)	323
Hin1II	CATG	3 cut(s)	35, 259, 337
HinfI	GANTC	2 cut(s)	119, 299
HpaII	CCGG	1 cut(s)	323
Hpy188I	TCNGA	2 cut(s)	287, 343
Hpy188III	TCNNGA	3 cut(s)	88, 218, 397
HpyAV	CCTTC	1 cut(s)	201
HpyCH4V	TGCA	3 cut(s)	17, 182, 255
HpyF10VI	GCNNNNNNNGC	1 cut(s)	20
HpyF3I	CTNAG	2 cut(s)	284, 340
Hsp92II	CATG	3 cut(s)	35, 259, 337
Ksp22I	TGATCA	1 cut(s)	237
Kzo9I	GATC	4 cut(s)	166, 237, 277, 360
LmnI	GCTCC	1 cut(s)	193
LweI	GCATC	1 cut(s)	63
MaeIII	GTNAC	1 cut(s)	106
MalI	GATC	4 cut(s)	168, 239, 279, 362
MboI	GATC	4 cut(s)	166, 237, 277, 360
MboII	GAAGA	2 cut(s)	87, 173
MluCI	AATT	5 cut(s)	140, 232, 377, 384, 408
MnlI	CCTC	5 cut(s)	13, 157, 293, 349, 404
MseI	TTAA	3 cut(s)	129, 294, 312
MslI	CAYNNNNRTG	1 cut(s)	219
MspI	CCGG	1 cut(s)	323
MspR9I	CCNGG	1 cut(s)	261
MvaI	CCWGG	1 cut(s)	261
MwoI	GCNNNNNNNGC	1 cut(s)	20
NdeII	GATC	4 cut(s)	166, 237, 277, 360
NlaIII	CATG	3 cut(s)	35, 259, 337
NspI	RCATGY	1 cut(s)	259
PaeI	GCATGC	1 cut(s)	259
PfeI	GAWTC	2 cut(s)	119, 299
PinAI	ACCGGT	1 cut(s)	322
PkrI	GCNGC	1 cut(s)	16
Psp6I	CCWGG	1 cut(s)	259
PspGI	CCWGG	1 cut(s)	259
PspPI	GGNCC	1 cut(s)	22
PstI	CTGCAG	1 cut(s)	19
RseI	CAYNNNNRTG	1 cut(s)	219
SaqAI	TTAA	3 cut(s)	129, 294, 312
SatI	GCNGC	1 cut(s)	15
Sau3AI	GATC	4 cut(s)	166, 237, 277, 360
Sau96I	GGNCC	1 cut(s)	22
ScrFI	CCNGG	1 cut(s)	261
SetI	ASST	3 cut(s)	16, 190, 371
SfaNI	GCATC	1 cut(s)	63
SfcI	CTRYAG	2 cut(s)	15, 114
SmiMI	CAYNNNNRTG	1 cut(s)	219
SmlI	CTYRAG	1 cut(s)	86
SmoI	CTYRAG	1 cut(s)	86
SphI	GCATGC	1 cut(s)	259
Sse9I	AATT	5 cut(s)	140, 232, 377, 384, 408
StyD4I	CCNGG	1 cut(s)	259
TasI	AATT	5 cut(s)	140, 232, 377, 384, 408
TfiI	GAWTC	2 cut(s)	119, 299
Tru1I	TTAA	3 cut(s)	129, 294, 312
Tru9I	TTAA	3 cut(s)	129, 294, 312
TseI	GCWGC	1 cut(s)	14
TspDTI	ATGAA	3 cut(s)	20, 174, 363
XapI	RAATTY	3 cut(s)	140, 232, 377
XceI	RCATGY	1 cut(s)	259

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.