Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr02

Orthogroup ID

OG0002461

Physical Location & Seq

Genomic Coordinates Forward (+)

34480704 .. 34482038

Gene Structure 1335 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD02G1288300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 459 bp

ATGATTAGCATTATTGATAGAAAGTTGATCGAGAGATTTCTCAAGACTTCTTCTTACCAAGGTAAACATATAATTAATTTGATCAATAAGCACGATGATTTCAAAGTTTGGATGCGTTCCTTTGCTGCTTTGTATGCTCGTCATGCTTATCGATACGTCATTACTGCTGTTGATTCTGGAAGCAAGGCTTTGGAATTTTTACGTTTGCATGAACAAGGTGATCAAAGTGAATCTAATGTGTTTAAAGACATACCAGTTGTTATAATGTCCTCAGAGAATGAGCCATCAAGGATCAACAGATGCTTGGAGGAAGGAGCAGAAGAGTTTTTTGTTAAACCAATGCAATTATCAGATATGAACAAGCTTAGACCTCACATGTTGAAGGGCAGAAGCAGTATGGATATGGAGGACCAATCCAACTTCAATAAGAGAGAACAAGAACAAAATATAATGACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000156 GO:0000160 GO:0003674 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007154 GO:0007165 GO:0007623 GO:0008150 GO:0009719 GO:0009725 GO:0009735 GO:0009736 GO:0009755 GO:0009889 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0023052 GO:0031323 GO:0031326 GO:0032870 GO:0035556 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048511 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0060089 GO:0060255 GO:0065007 GO:0070887 GO:0071310 GO:0071368 GO:0071495 GO:0080090 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

Response_reg

Protein Analysis

153

Amino Acids

17.85

Weight (kDa)

6.97

Isoelectric Point (pI)

60.32

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0002461)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G07440 AT2G41310 AT3G57040 AT3G57040
fragaria_vesca	FvH4_6g25290 FvH4_7g02970
malus_domestica	MD02G1288300.v1.1 MD07G1038500.v1.1 MD12G1093500.v1.1 MD14G1086100.v1.1
prunus_persica	Prupe.2G034700_v2.0.a1 Prupe.7G041600_v2.0.a1
pyrus_communis	pycom12g07920 pycom14g07600
rosa_chinensis	RchiOBHm_Chr1g0323961 RchiOBHm_Chr1g0360681 RchiOBHm_Chr2g0125351
rosa_laevigata	RLG00000018858 RLG00000030239
rosa_multiflora	Rmu_sc0002529.1_g000022 Rmu_sc0002631.1_g000008 Rmu_sc0006175.1_g000025 Rmu_sc0006399.1_g000002
rosa_roxburghii	Rroxscaffold_2G00118090 Rroxscaffold_4G00326040
rosa_rugosa	Rorug01G0040800 Rorug02G0256900
rosa_samantha	Rh1AG058100 Rh1AG058700 Rh1BG049200 Rh1BG049700 Rh1CG060700 Rh1DG064600 Rh2AG315100 Rh2BG323200 Rh2CG305500 Rh2DG341800
rosa_wichuraiana	Rw0G023530 Rw1G004980 Rw1G005010 Rw2G025470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	263
AclWI	GGATC	1 cut(s)	299
AcsI	RAATTY	1 cut(s)	194
AflIII	ACRYGT	1 cut(s)	375
AgsI	TTSAA	3 cut(s)	103, 382, 424
AluBI	AGCT	1 cut(s)	364
AluI	AGCT	1 cut(s)	364
AlwI	GGATC	1 cut(s)	299
ApeKI	GCWGC	1 cut(s)	125
ApoI	RAATTY	1 cut(s)	194
AseI	ATTAAT	1 cut(s)	75
AspS9I	GGNCC	1 cut(s)	409
AsuHPI	GGTGA	1 cut(s)	230
AvaII	GGWCC	1 cut(s)	409
BbvI	GCAGC	1 cut(s)	112
BccI	CCATC	1 cut(s)	292
BclI	TGATCA	2 cut(s)	81, 220
BisI	GCNGC	1 cut(s)	126
BlsI	GCNGC	1 cut(s)	127
Bme18I	GGWCC	1 cut(s)	409
BmgT120I	GGNCC	1 cut(s)	409
BmsI	GCATC	2 cut(s)	102, 290
BpuEI	CTTGAG	1 cut(s)	26
Bsa29I	ATCGAT	1 cut(s)	151
BsaJI	CCNNGG	1 cut(s)	58
Bse1I	ACTGG	1 cut(s)	254
BseCI	ATCGAT	1 cut(s)	151
BseDI	CCNNGG	1 cut(s)	58
BseGI	GGATG	1 cut(s)	117
BseMII	CTCAG	1 cut(s)	285
BseNI	ACTGG	1 cut(s)	254
BseXI	GCAGC	1 cut(s)	112
BshVI	ATCGAT	1 cut(s)	151
Bsp143I	GATC	4 cut(s)	27, 81, 220, 291
BspCNI	CTCAG	1 cut(s)	284
BspDI	ATCGAT	1 cut(s)	151
BspPI	GGATC	1 cut(s)	299
BsrI	ACTGG	1 cut(s)	254
BssECI	CCNNGG	1 cut(s)	58
BssMI	GATC	4 cut(s)	27, 81, 220, 291
BssT1I	CCWWGG	1 cut(s)	58
Bst6I	CTCTTC	1 cut(s)	315
BstDEI	CTNAG	2 cut(s)	271, 365
BstF5I	GGATG	1 cut(s)	117
BstKTI	GATC	4 cut(s)	30, 84, 223, 294
BstMBI	GATC	4 cut(s)	27, 81, 220, 291
BstMWI	GCNNNNNNNGC	2 cut(s)	134, 143
BstNSI	RCATGY	1 cut(s)	379
BstV1I	GCAGC	1 cut(s)	112
Bsu15I	ATCGAT	1 cut(s)	151
BsuTUI	ATCGAT	1 cut(s)	151
BtsCI	GGATG	1 cut(s)	117
Cfr13I	GGNCC	1 cut(s)	409
ClaI	ATCGAT	1 cut(s)	151
CviAII	CATG	3 cut(s)	143, 209, 376
CviJI	RGCY	3 cut(s)	188, 283, 364
CviKI_1	RGCY	3 cut(s)	188, 283, 364
DdeI	CTNAG	2 cut(s)	271, 365
DpnI	GATC	4 cut(s)	29, 83, 222, 293
DpnII	GATC	4 cut(s)	27, 81, 220, 291
DraI	TTTAAA	1 cut(s)	244
Eam1104I	CTCTTC	1 cut(s)	315
EarI	CTCTTC	1 cut(s)	315
Eco130I	CCWWGG	1 cut(s)	58
Eco47I	GGWCC	1 cut(s)	409
EcoT14I	CCWWGG	1 cut(s)	58
ErhI	CCWWGG	1 cut(s)	58
FaeI	CATG	3 cut(s)	146, 212, 379
FalI	AAGNNNNNCTT	2 cut(s)	172, 204
FatI	CATG	3 cut(s)	142, 208, 375
FbaI	TGATCA	2 cut(s)	81, 220
Fnu4HI	GCNGC	1 cut(s)	126
FokI	GGATG	1 cut(s)	124
Fsp4HI	GCNGC	1 cut(s)	126
GluI	GCNGC	1 cut(s)	126
Hin1II	CATG	3 cut(s)	146, 212, 379
HindIII	AAGCTT	1 cut(s)	362
HinfI	GANTC	2 cut(s)	173, 230
HphI	GGTGA	1 cut(s)	230
Hpy166II	GTNNAC	1 cut(s)	65
Hpy188I	TCNGA	2 cut(s)	274, 352
Hpy188III	TCNNGA	3 cut(s)	31, 43, 177
Hpy8I	GTNNAC	1 cut(s)	65
HpyAV	CCTTC	2 cut(s)	305, 376
HpyCH4IV	ACGT	2 cut(s)	156, 202
HpyCH4V	TGCA	2 cut(s)	208, 343
HpyF10VI	GCNNNNNNNGC	2 cut(s)	134, 143
HpyF3I	CTNAG	2 cut(s)	271, 365
HpySE526I	ACGT	2 cut(s)	156, 202
Hsp92II	CATG	3 cut(s)	146, 212, 379
Ksp22I	TGATCA	2 cut(s)	81, 220
Kzo9I	GATC	4 cut(s)	27, 81, 220, 291
LmnI	GCTCC	1 cut(s)	314
LpnPI	CCDG	2 cut(s)	162, 267
Lsp1109I	GCAGC	1 cut(s)	112
LweI	GCATC	2 cut(s)	102, 290
MaeII	ACGT	2 cut(s)	156, 202
MalI	GATC	4 cut(s)	29, 83, 222, 293
MboI	GATC	4 cut(s)	27, 81, 220, 291
MboII	GAAGA	2 cut(s)	42, 332
MluCI	AATT	4 cut(s)	72, 76, 194, 344
MmeI	TCCRAC	1 cut(s)	441
MnlI	CCTC	4 cut(s)	280, 301, 381, 400
MseI	TTAA	3 cut(s)	75, 243, 333
MwoI	GCNNNNNNNGC	2 cut(s)	134, 143
NdeII	GATC	4 cut(s)	27, 81, 220, 291
NlaIII	CATG	3 cut(s)	146, 212, 379
NspI	RCATGY	1 cut(s)	379
PciI	ACATGT	1 cut(s)	375
PfeI	GAWTC	2 cut(s)	173, 230
PkrI	GCNGC	1 cut(s)	127
PscI	ACATGT	1 cut(s)	375
PshBI	ATTAAT	1 cut(s)	75
PsiI	TTATAA	1 cut(s)	263
PspPI	GGNCC	1 cut(s)	409
SaqAI	TTAA	3 cut(s)	75, 243, 333
SatI	GCNGC	1 cut(s)	126
Sau3AI	GATC	4 cut(s)	27, 81, 220, 291
Sau96I	GGNCC	1 cut(s)	409
SetI	ASST	6 cut(s)	64, 159, 205, 220, 366, 373
SfaNI	GCATC	2 cut(s)	102, 290
SinI	GGWCC	1 cut(s)	409
SmlI	CTYRAG	1 cut(s)	41
SmoI	CTYRAG	1 cut(s)	41
Sse9I	AATT	4 cut(s)	72, 76, 194, 344
StyI	CCWWGG	1 cut(s)	58
TaiI	ACGT	2 cut(s)	159, 205
TaqI	TCGA	2 cut(s)	30, 151
TasI	AATT	4 cut(s)	72, 76, 194, 344
TfiI	GAWTC	2 cut(s)	173, 230
Tru1I	TTAA	3 cut(s)	75, 243, 333
Tru9I	TTAA	3 cut(s)	75, 243, 333
TseI	GCWGC	1 cut(s)	125
TspDTI	ATGAA	2 cut(s)	225, 371
VpaK11BI	GGWCC	1 cut(s)	409
VspI	ATTAAT	1 cut(s)	75
XapI	RAATTY	1 cut(s)	194
XceI	RCATGY	1 cut(s)	379

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.