Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr07

Orthogroup ID

OG0002461

Physical Location & Seq

Genomic Coordinates Reverse (-)

3168014 .. 3169998

Gene Structure 1985 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD07G1038500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 528 bp

ATGGGTTTGGCAGCTGCAGAGGCTCATCAGTTTCATGTTCTTGCTGTTGATGACAGCATCATTGACAGAAAGTTGATTGAGAGACTTCTCAAGACTTCTTCTTATCAAGTTACTGCTGTTGATTCTGGAAGCAAAGCTTTGGAATTTTTGGGTTTGCATGAACAAGATGATCAGAGTGCTGCAGATATTCCCTCTCTTTCCCCAGATAATCATCACCAGGAGGTTGAAGTAAATTTGATCATTACAGATTACTGCATGCCAGGAATGACAGGTTATGATCTCCTCAGAAAGATTAAGGAATCTAATGTGCTTAAAGACATACCAGTTGTTATTATGTCCTCAGAGAATGAGCCATCAAGGATCAACAGATGCTTGGAGGAAGGAGCAGAAGAGTTTTTTCTTAAACCAGTGCAATTATCCGATGTGAACAAGCTTCGACCTCACATGTTGAAGGGCAGAAGCAGTATGGACATGGAGGACCAACCCAACTTCAACAAGAAAGGGCATGAAACTAACACAATCAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000156 GO:0000160 GO:0003674 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007154 GO:0007165 GO:0007623 GO:0008150 GO:0009719 GO:0009725 GO:0009735 GO:0009736 GO:0009755 GO:0009889 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0023052 GO:0031323 GO:0031326 GO:0032870 GO:0035556 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048511 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0060089 GO:0060255 GO:0065007 GO:0070887 GO:0071310 GO:0071368 GO:0071495 GO:0080090 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

Response_reg

Protein Analysis

176

Amino Acids

19.62

Weight (kDa)

5.01

Isoelectric Point (pI)

44.54

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Response_reg	PF00072	13 - 142	5.4e-19	Response regulator receiver domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0002461)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G07440 AT2G41310 AT3G57040 AT3G57040
fragaria_vesca	FvH4_6g25290 FvH4_7g02970
malus_domestica	MD02G1288300.v1.1 MD07G1038500.v1.1 MD12G1093500.v1.1 MD14G1086100.v1.1
prunus_persica	Prupe.2G034700_v2.0.a1 Prupe.7G041600_v2.0.a1
pyrus_communis	pycom12g07920 pycom14g07600
rosa_chinensis	RchiOBHm_Chr1g0323961 RchiOBHm_Chr1g0360681 RchiOBHm_Chr2g0125351
rosa_laevigata	RLG00000018858 RLG00000030239
rosa_multiflora	Rmu_sc0002529.1_g000022 Rmu_sc0002631.1_g000008 Rmu_sc0006175.1_g000025 Rmu_sc0006399.1_g000002
rosa_roxburghii	Rroxscaffold_2G00118090 Rroxscaffold_4G00326040
rosa_rugosa	Rorug01G0040800 Rorug02G0256900
rosa_samantha	Rh1AG058100 Rh1AG058700 Rh1BG049200 Rh1BG049700 Rh1CG060700 Rh1DG064600 Rh2AG315100 Rh2BG323200 Rh2CG305500 Rh2DG341800
rosa_wichuraiana	Rw0G023530 Rw1G004980 Rw1G005010 Rw2G025470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	368
AcsI	RAATTY	2 cut(s)	143, 232
AflIII	ACRYGT	1 cut(s)	444
AgsI	TTSAA	3 cut(s)	227, 451, 493
AjnI	CCWGG	2 cut(s)	216, 259
AluBI	AGCT	3 cut(s)	14, 137, 433
AluI	AGCT	3 cut(s)	14, 137, 433
Alw26I	GTCTC	1 cut(s)	76
AlwI	GGATC	1 cut(s)	368
ApeKI	GCWGC	3 cut(s)	11, 14, 179
ApoI	RAATTY	2 cut(s)	143, 232
AspS9I	GGNCC	1 cut(s)	478
AsuHPI	GGTGA	1 cut(s)	206
AvaII	GGWCC	1 cut(s)	478
BbvI	GCAGC	2 cut(s)	23, 166
BccI	CCATC	1 cut(s)	361
BciT130I	CCWGG	2 cut(s)	218, 261
BclI	TGATCA	2 cut(s)	169, 237
BcoDI	GTCTC	1 cut(s)	76
BfmI	CTRYAG	2 cut(s)	15, 180
BisI	GCNGC	3 cut(s)	12, 15, 180
BlsI	GCNGC	3 cut(s)	13, 16, 181
Bme1390I	CCNGG	2 cut(s)	218, 261
Bme18I	GGWCC	1 cut(s)	478
BmgT120I	GGNCC	1 cut(s)	478
BmrFI	CCNGG	2 cut(s)	218, 261
BmsI	GCATC	2 cut(s)	66, 359
BpuEI	CTTGAG	1 cut(s)	74
BsaBI	GATNNNNATC	1 cut(s)	210
Bse1I	ACTGG	2 cut(s)	323, 407
Bse8I	GATNNNNATC	1 cut(s)	210
BseBI	CCWGG	2 cut(s)	218, 261
BseJI	GATNNNNATC	1 cut(s)	210
BseMII	CTCAG	2 cut(s)	298, 354
BseNI	ACTGG	2 cut(s)	323, 407
BseRI	GAGGAG	1 cut(s)	272
BseXI	GCAGC	2 cut(s)	23, 166
BsmAI	GTCTC	1 cut(s)	76
Bsp143I	GATC	4 cut(s)	169, 237, 277, 360
BspCNI	CTCAG	2 cut(s)	297, 353
BspMAI	CTGCAG	2 cut(s)	19, 184
BspPI	GGATC	1 cut(s)	368
BsrI	ACTGG	2 cut(s)	323, 407
BssMI	GATC	4 cut(s)	169, 237, 277, 360
Bst2UI	CCWGG	2 cut(s)	218, 261
Bst6I	CTCTTC	1 cut(s)	384
BstC8I	GCNNGC	1 cut(s)	257
BstDEI	CTNAG	2 cut(s)	284, 340
BstKTI	GATC	4 cut(s)	172, 240, 280, 363
BstMAI	GTCTC	1 cut(s)	76
BstMBI	GATC	4 cut(s)	169, 237, 277, 360
BstMWI	GCNNNNNNNGC	1 cut(s)	20
BstNI	CCWGG	2 cut(s)	218, 261
BstNSI	RCATGY	2 cut(s)	259, 448
BstSCI	CCNGG	2 cut(s)	216, 259
BstSFI	CTRYAG	2 cut(s)	15, 180
BstV1I	GCAGC	2 cut(s)	23, 166
BtsIMutI	CAGTG	1 cut(s)	414
Cac8I	GCNNGC	1 cut(s)	257
Cfr13I	GGNCC	1 cut(s)	478
CviAII	CATG	6 cut(s)	35, 158, 256, 445, 472, 506
CviJI	RGCY	5 cut(s)	14, 23, 137, 352, 433
CviKI_1	RGCY	5 cut(s)	14, 23, 137, 352, 433
DdeI	CTNAG	2 cut(s)	284, 340
DpnI	GATC	4 cut(s)	171, 239, 279, 362
DpnII	GATC	4 cut(s)	169, 237, 277, 360
Eam1104I	CTCTTC	1 cut(s)	384
EarI	CTCTTC	1 cut(s)	384
Eco47I	GGWCC	1 cut(s)	478
EcoRII	CCWGG	2 cut(s)	216, 259
FaeI	CATG	6 cut(s)	38, 161, 259, 448, 475, 509
FalI	AAGNNNNNCTT	2 cut(s)	121, 153
FatI	CATG	6 cut(s)	34, 157, 255, 444, 471, 505
FbaI	TGATCA	2 cut(s)	169, 237
Fnu4HI	GCNGC	3 cut(s)	12, 15, 180
Fsp4HI	GCNGC	3 cut(s)	12, 15, 180
GluI	GCNGC	3 cut(s)	12, 15, 180
Hin1II	CATG	6 cut(s)	38, 161, 259, 448, 475, 509
HindIII	AAGCTT	2 cut(s)	135, 431
HinfI	GANTC	2 cut(s)	122, 299
HphI	GGTGA	1 cut(s)	206
Hpy166II	GTNNAC	1 cut(s)	427
Hpy188I	TCNGA	4 cut(s)	174, 287, 343, 421
Hpy188III	TCNNGA	2 cut(s)	91, 126
Hpy8I	GTNNAC	1 cut(s)	427
HpyAV	CCTTC	2 cut(s)	374, 445
HpyCH4V	TGCA	5 cut(s)	17, 157, 182, 255, 412
HpyF10VI	GCNNNNNNNGC	1 cut(s)	20
HpyF3I	CTNAG	2 cut(s)	284, 340
Hsp92II	CATG	6 cut(s)	38, 161, 259, 448, 475, 509
Ksp22I	TGATCA	2 cut(s)	169, 237
Kzo9I	GATC	4 cut(s)	169, 237, 277, 360
LmnI	GCTCC	1 cut(s)	383
LpnPI	CCDG	9 cut(s)	111, 203, 216, 230, 246, 255, 273, 336, 420
Lsp1109I	GCAGC	2 cut(s)	23, 166
LweI	GCATC	2 cut(s)	66, 359
MaeIII	GTNAC	1 cut(s)	109
MalI	GATC	4 cut(s)	171, 239, 279, 362
MboI	GATC	4 cut(s)	169, 237, 277, 360
MboII	GAAGA	2 cut(s)	90, 401
MluCI	AATT	3 cut(s)	143, 232, 413
MnlI	CCTC	8 cut(s)	13, 202, 214, 293, 349, 370, 450, 469
MseI	TTAA	3 cut(s)	294, 312, 402
MspA1I	CMGCKG	1 cut(s)	14
MspR9I	CCNGG	2 cut(s)	218, 261
MvaI	CCWGG	2 cut(s)	218, 261
MwoI	GCNNNNNNNGC	1 cut(s)	20
NdeII	GATC	4 cut(s)	169, 237, 277, 360
NlaIII	CATG	6 cut(s)	38, 161, 259, 448, 475, 509
NspI	RCATGY	2 cut(s)	259, 448
PaeI	GCATGC	1 cut(s)	259
PciI	ACATGT	1 cut(s)	444
PfeI	GAWTC	2 cut(s)	122, 299
PkrI	GCNGC	3 cut(s)	13, 16, 181
PscI	ACATGT	1 cut(s)	444
Psp6I	CCWGG	2 cut(s)	216, 259
PspGI	CCWGG	2 cut(s)	216, 259
PspPI	GGNCC	1 cut(s)	478
PstI	CTGCAG	2 cut(s)	19, 184
PvuII	CAGCTG	1 cut(s)	14
SaqAI	TTAA	3 cut(s)	294, 312, 402
SatI	GCNGC	3 cut(s)	12, 15, 180
Sau3AI	GATC	4 cut(s)	169, 237, 277, 360
Sau96I	GGNCC	1 cut(s)	478
ScrFI	CCNGG	2 cut(s)	218, 261
SetI	ASST	6 cut(s)	16, 139, 225, 274, 435, 442
SfaNI	GCATC	2 cut(s)	66, 359
SfcI	CTRYAG	2 cut(s)	15, 180
SinI	GGWCC	1 cut(s)	478
SmlI	CTYRAG	1 cut(s)	89
SmoI	CTYRAG	1 cut(s)	89
SphI	GCATGC	1 cut(s)	259
Sse9I	AATT	3 cut(s)	143, 232, 413
StyD4I	CCNGG	2 cut(s)	216, 259
TaqI	TCGA	1 cut(s)	436
TasI	AATT	3 cut(s)	143, 232, 413
TfiI	GAWTC	2 cut(s)	122, 299
Tru1I	TTAA	3 cut(s)	294, 312, 402
Tru9I	TTAA	3 cut(s)	294, 312, 402
TscAI	CASTG	1 cut(s)	414
TseI	GCWGC	3 cut(s)	11, 14, 179
TspDTI	ATGAA	3 cut(s)	23, 174, 522
TspRI	CASTG	1 cut(s)	414
VpaK11BI	GGWCC	1 cut(s)	478
XapI	RAATTY	2 cut(s)	143, 232
XceI	RCATGY	2 cut(s)	259, 448

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.