Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Contig01090

Orthogroup ID

OG0002461

Physical Location & Seq

Genomic Coordinates Reverse (-)

5954 .. 7166

Gene Structure 1213 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw0G023530.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 462 bp

ATGGTTACTGCTGTAGATTCTGGTATTAAGGCTTTAGAATTTTTGGGTTTGAATGATGAAGAGGATCAAAGTGATATTGCAGAAGCTCCTTCTGTGTCTCCAAACAATCATCATCAGGATGTAGATGTGAATTTGATCATTACAGATTACTGCATGCCAGGAATGACAGGCTATGATCTCCTCAGAAAGATTAAGGAATCCAAGTCTCTTAAAGACATACCAGTTGTTATCATGTCCTCAGAGAATGAACCATCAAGGATCAACAGATGCTTAGAGGAAGGAGCAGAAGAGTTCTTTCTGAAACCAGTAAAATTGTCAGATGTCAACAAGCTTAGACCCCATATGATGAAGGGTACAAGTATAGAAGACGAAGGCAACATCAACGAGGGAAAGGCCATGGAAGAAATCCAAACACCTGAGAGAACTAGAACACTATATAATGGCTTTGATGTGCTTTCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000156 GO:0000160 GO:0003674 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007154 GO:0007165 GO:0007623 GO:0008150 GO:0009719 GO:0009725 GO:0009735 GO:0009736 GO:0009755 GO:0009889 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0023052 GO:0031323 GO:0031326 GO:0032870 GO:0035556 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048511 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0060089 GO:0060255 GO:0065007 GO:0070887 GO:0071310 GO:0071368 GO:0071495 GO:0080090 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

Response_reg

Protein Analysis

153

Amino Acids

17.13

Weight (kDa)

4.58

Isoelectric Point (pI)

53.7

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Response_reg	PF00072	36 - 108	1.5e-15	Response regulator receiver domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0002461)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G07440 AT2G41310 AT3G57040 AT3G57040
fragaria_vesca	FvH4_6g25290 FvH4_7g02970
malus_domestica	MD02G1288300.v1.1 MD07G1038500.v1.1 MD12G1093500.v1.1 MD14G1086100.v1.1
prunus_persica	Prupe.2G034700_v2.0.a1 Prupe.7G041600_v2.0.a1
pyrus_communis	pycom12g07920 pycom14g07600
rosa_chinensis	RchiOBHm_Chr1g0323961 RchiOBHm_Chr1g0360681 RchiOBHm_Chr2g0125351
rosa_laevigata	RLG00000018858 RLG00000030239
rosa_multiflora	Rmu_sc0002529.1_g000022 Rmu_sc0002631.1_g000008 Rmu_sc0006175.1_g000025 Rmu_sc0006399.1_g000002
rosa_roxburghii	Rroxscaffold_2G00118090 Rroxscaffold_4G00326040
rosa_rugosa	Rorug01G0040800 Rorug02G0256900
rosa_samantha	Rh1AG058100 Rh1AG058700 Rh1BG049200 Rh1BG049700 Rh1CG060700 Rh1DG064600 Rh2AG315100 Rh2BG323200 Rh2CG305500 Rh2DG341800
rosa_wichuraiana	Rw0G023530 Rw1G004980 Rw1G005010 Rw2G025470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	72, 266
AcsI	RAATTY	2 cut(s)	38, 130
AfaI	GTAC	1 cut(s)	355
AgsI	TTSAA	1 cut(s)	52
AjnI	CCWGG	1 cut(s)	157
AluBI	AGCT	2 cut(s)	86, 331
AluI	AGCT	2 cut(s)	86, 331
Alw26I	GTCTC	2 cut(s)	102, 210
AlwI	GGATC	2 cut(s)	72, 266
AoxI	GGCC	1 cut(s)	393
ApoI	RAATTY	2 cut(s)	38, 130
BbsI	GAAGAC	1 cut(s)	372
BccI	CCATC	1 cut(s)	259
BciT130I	CCWGG	1 cut(s)	159
BclI	TGATCA	1 cut(s)	135
BcoDI	GTCTC	2 cut(s)	102, 210
BfaI	CTAG	1 cut(s)	426
BfmI	CTRYAG	1 cut(s)	12
Bme1390I	CCNGG	1 cut(s)	159
BmrFI	CCNGG	1 cut(s)	159
BmsI	GCATC	1 cut(s)	257
BpiI	GAAGAC	1 cut(s)	372
BsaJI	CCNNGG	1 cut(s)	396
Bse1I	ACTGG	2 cut(s)	221, 305
BseBI	CCWGG	1 cut(s)	159
BseDI	CCNNGG	1 cut(s)	396
BseGI	GGATG	1 cut(s)	124
BseMII	CTCAG	3 cut(s)	196, 252, 408
BseNI	ACTGG	2 cut(s)	221, 305
BseRI	GAGGAG	1 cut(s)	170
BshFI	GGCC	1 cut(s)	395
BsmAI	GTCTC	2 cut(s)	102, 210
BsnI	GGCC	1 cut(s)	395
Bsp143I	GATC	4 cut(s)	64, 135, 175, 258
Bsp19I	CCATGG	1 cut(s)	396
BspANI	GGCC	1 cut(s)	395
BspCNI	CTCAG	3 cut(s)	195, 251, 409
BspHI	TCATGA	1 cut(s)	458
BspPI	GGATC	2 cut(s)	72, 266
BsrI	ACTGG	2 cut(s)	221, 305
BssECI	CCNNGG	1 cut(s)	396
BssMI	GATC	4 cut(s)	64, 135, 175, 258
BssT1I	CCWWGG	1 cut(s)	396
Bst2UI	CCWGG	1 cut(s)	159
Bst6I	CTCTTC	2 cut(s)	54, 282
BstC8I	GCNNGC	1 cut(s)	155
BstDEI	CTNAG	5 cut(s)	182, 238, 271, 332, 417
BstDSI	CCRYGG	1 cut(s)	396
BstF5I	GGATG	1 cut(s)	124
BstKTI	GATC	4 cut(s)	67, 138, 178, 261
BstMAI	GTCTC	2 cut(s)	102, 210
BstMBI	GATC	4 cut(s)	64, 135, 175, 258
BstNI	CCWGG	1 cut(s)	159
BstNSI	RCATGY	1 cut(s)	157
BstSCI	CCNGG	1 cut(s)	157
BstSFI	CTRYAG	1 cut(s)	12
BstV2I	GAAGAC	1 cut(s)	372
BsuRI	GGCC	1 cut(s)	395
BtgI	CCRYGG	1 cut(s)	396
BtsCI	GGATG	1 cut(s)	124
Cac8I	GCNNGC	1 cut(s)	155
CciI	TCATGA	1 cut(s)	458
Csp6I	GTAC	1 cut(s)	354
CviAII	CATG	4 cut(s)	154, 232, 397, 459
CviJI	RGCY	6 cut(s)	32, 86, 171, 331, 395, 444
CviKI_1	RGCY	6 cut(s)	32, 86, 171, 331, 395, 444
CviQI	GTAC	1 cut(s)	354
DdeI	CTNAG	5 cut(s)	182, 238, 271, 332, 417
DpnI	GATC	4 cut(s)	66, 137, 177, 260
DpnII	GATC	4 cut(s)	64, 135, 175, 258
Eam1104I	CTCTTC	2 cut(s)	54, 282
EarI	CTCTTC	2 cut(s)	54, 282
Eco130I	CCWWGG	1 cut(s)	396
EcoRII	CCWGG	1 cut(s)	157
EcoT14I	CCWWGG	1 cut(s)	396
ErhI	CCWWGG	1 cut(s)	396
FaeI	CATG	4 cut(s)	157, 235, 400, 462
FatI	CATG	4 cut(s)	153, 231, 396, 458
FauNDI	CATATG	1 cut(s)	342
FbaI	TGATCA	1 cut(s)	135
FokI	GGATG	1 cut(s)	131
FspBI	CTAG	1 cut(s)	426
HaeIII	GGCC	1 cut(s)	395
Hin1II	CATG	4 cut(s)	157, 235, 400, 462
HincII	GTYRAC	1 cut(s)	325
HindII	GTYRAC	1 cut(s)	325
HindIII	AAGCTT	1 cut(s)	329
HinfI	GANTC	2 cut(s)	17, 197
Hpy166II	GTNNAC	1 cut(s)	325
Hpy188I	TCNGA	4 cut(s)	185, 241, 300, 319
Hpy188III	TCNNGA	2 cut(s)	116, 459
Hpy8I	GTNNAC	1 cut(s)	325
HpyAV	CCTTC	4 cut(s)	99, 272, 343, 365
HpyCH4V	TGCA	2 cut(s)	80, 153
HpyF3I	CTNAG	5 cut(s)	182, 238, 271, 332, 417
Hsp92II	CATG	4 cut(s)	157, 235, 400, 462
Ksp22I	TGATCA	1 cut(s)	135
Kzo9I	GATC	4 cut(s)	64, 135, 175, 258
LmnI	GCTCC	2 cut(s)	91, 281
LpnPI	CCDG	8 cut(s)	6, 101, 144, 153, 171, 234, 318, 429
LweI	GCATC	1 cut(s)	257
MaeI	CTAG	1 cut(s)	426
MaeIII	GTNAC	1 cut(s)	4
MalI	GATC	4 cut(s)	66, 137, 177, 260
MboI	GATC	4 cut(s)	64, 135, 175, 258
MboII	GAAGA	4 cut(s)	71, 299, 377, 413
MluCI	AATT	3 cut(s)	38, 130, 311
MnlI	CCTC	5 cut(s)	55, 191, 247, 268, 379
MseI	TTAA	3 cut(s)	27, 192, 210
MslI	CAYNNNNRTG	1 cut(s)	117
MspR9I	CCNGG	1 cut(s)	159
MvaI	CCWGG	1 cut(s)	159
NcoI	CCATGG	1 cut(s)	396
NdeI	CATATG	1 cut(s)	342
NdeII	GATC	4 cut(s)	64, 135, 175, 258
NlaIII	CATG	4 cut(s)	157, 235, 400, 462
NspI	RCATGY	1 cut(s)	157
PaeI	GCATGC	1 cut(s)	157
PagI	TCATGA	1 cut(s)	458
PfeI	GAWTC	2 cut(s)	17, 197
Psp6I	CCWGG	1 cut(s)	157
PspGI	CCWGG	1 cut(s)	157
RsaI	GTAC	1 cut(s)	355
RsaNI	GTAC	1 cut(s)	354
RseI	CAYNNNNRTG	1 cut(s)	117
SaqAI	TTAA	3 cut(s)	27, 192, 210
Sau3AI	GATC	4 cut(s)	64, 135, 175, 258
ScrFI	CCNGG	1 cut(s)	159
SetI	ASST	3 cut(s)	88, 333, 418
SfaNI	GCATC	1 cut(s)	257
SfcI	CTRYAG	1 cut(s)	12
SmiMI	CAYNNNNRTG	1 cut(s)	117
SphI	GCATGC	1 cut(s)	157
Sse9I	AATT	3 cut(s)	38, 130, 311
SspMI	CTAG	1 cut(s)	426
StyD4I	CCNGG	1 cut(s)	157
StyI	CCWWGG	1 cut(s)	396
TasI	AATT	3 cut(s)	38, 130, 311
TfiI	GAWTC	2 cut(s)	17, 197
Tru1I	TTAA	3 cut(s)	27, 192, 210
Tru9I	TTAA	3 cut(s)	27, 192, 210
TspDTI	ATGAA	4 cut(s)	72, 261, 362, 447
XapI	RAATTY	2 cut(s)	38, 130
XceI	RCATGY	1 cut(s)	157
XspI	CTAG	1 cut(s)	426

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.