AT2G41710

DNA-binding domain in plant proteins such as APETALA2 and EREBPs

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0006364
Physical Location & Seq
Reverse (-)
17400022 .. 17403050
3029 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G41710.3

Sequence Viewer

Length: 1272 bp
ATGGCGTCGGTGTCGTCGTCGGATCAAGGACCTAAGACAGAAGCAGGATGTAGCGGCGGAGGAGGAGGAGAGAGCTCGGAGACAGTGGCGGCGAGTGATCAGATGTTGTTGTATAGAGGTTTTAAGAAGGCGAAGAAGGAGAGAGGTTGTACAGCTAAGGAGCGTATTAGTAAAATGCCTCCGTGCACTGCTGGGAAAAGGAGTTCCATATACCGGGGAGTCACCAGACATAGATGGACAGGTCGTTATGAAGCTCACCTTTGGGATAAGAGTACCTGGAACCAAAACCAGAACAAGAAGGGAAAACAAGTTTATCTAGGAGCATATGATGATGAAGAGGCTGCTGCTAGAGCTTACGACCTTGCTGCCTTAAAATATTGGGGTCCTGGGACACTTATAAATTTTCCGGTGACTGATTATACCAGGGATTTAGAAGAAATGCAAAATCTCTCAAGGGAAGAATACCTTGCATCTTTACGTAGAAAAAGCAGCGGTTTCTCTAGGGGAATAGCGAAATATCGTGGACTTCAAAGCCGATGGGACGCATCAGCCAGTCGTATGCCTGGACCTGAATACTTCAGTAACATTCATTACGGGGCAGGTGATGATCGTGGAACAGAAGGTGACTTTCTAGGTAGCTTTTGTCTGGAAAGAAAGATTGATCTAACAGGATACATAAAGTGGTGGGGAGCCAACAAGAACCGTCAACCAGAATCTTCATCAAAAGCATCAGAGGATGCAAACGTCGAAGATGCTGGTACTGAGCTTAAAACACTGGAACACACATCCCATGCAACAGAACCATACAAGGCGCCAAACCTTGGCGTCCTTTGTGGAACTCAGAGAAAAGAAAAAGAAATATCATCACCATCAAGCTCTTCTGCTTTAAGCATCTTGTCTCAGTCGCCTGCCTTCAAGAGCCTAGAGGAGAAAGTGTTGAAGATCCAAGAAAGCTGCAATAATGAAAACGATGAGAATGCAAACCGTAACATCATCAATATGGAGAAGAATAACGGCAAGGCAATAGAGAAACCAGTTGTGAGTCATGGAGTTGCTTTAGGCGGTGCTGCTGCTTTGTCTCTTCAGAAAAGCATGTACCCACTTACCTCTCTCTTAACGGCTCCATTGCTCACCAACTACAATACATTGGATCCTCTTGCAGACCCTATTCTCTGGACACCATTTCTTCCTTCAGGATCCTCTCTTACTTCAGAGGTGACAAAGACAGAGACCAGCTGTTCCACGTACAGCTACCTCCCACAAGAGAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
AP2

Protein Analysis

423

Amino Acids

46.47

Weight (kDa)

8.29

Isoelectric Point (pI)

52.19

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AP2 PF00847 110 - 163 1.4e-08 AP2 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 398
AarI CACCTGC 1 cut(s) 590
Acc36I ACCTGC 1 cut(s) 590
AccB1I GGYRCC 1 cut(s) 811
AccB7I CCANNNNNTGG 1 cut(s) 821
AciI CCGC 5 cut(s) 54, 57, 89, 492, 1062
AclWI GGATC 6 cut(s) 30, 937, 1145, 1158, 1191, 1204
AcsI RAATTY 1 cut(s) 400
AcuI CTGAAG 4 cut(s) 562, 1067, 1176, 1194
AcyI GRCGYC 3 cut(s) 5, 812, 825
AfaI GTAC 5 cut(s) 151, 274, 760, 1097, 1247
AfiI CCNNNNNNNGG 2 cut(s) 213, 821
AgsI TTSAA 3 cut(s) 530, 916, 940
AjnI CCWGG 4 cut(s) 275, 385, 422, 562
AloI GAACNNNNNNTCC 2 cut(s) 187, 219
Alw21I GWGCWC 2 cut(s) 77, 188
Alw26I GTCTC 4 cut(s) 74, 903, 1083, 1223
Alw44I GTGCAC 1 cut(s) 184
AlwI GGATC 6 cut(s) 30, 937, 1145, 1158, 1191, 1204
ApaLI GTGCAC 1 cut(s) 184
ApeKI GCWGC 7 cut(s) 341, 344, 365, 489, 954, 1067, 1070
ApoI RAATTY 1 cut(s) 400
AspLEI GCGC 1 cut(s) 814
AspS9I GGNCC 3 cut(s) 29, 383, 566
AsuC2I CCSGG 1 cut(s) 215
AsuHPI GGTGA 8 cut(s) 214, 248, 421, 614, 635, 858, 1123, 1228
AvaII GGWCC 3 cut(s) 29, 383, 566
BaeGI GKGCMC 1 cut(s) 188
BamHI GGATCC 2 cut(s) 1150, 1196
BanI GGYRCC 1 cut(s) 811
BanII GRGCYC 1 cut(s) 77
Bbv12I GWGCWC 2 cut(s) 77, 188
BbvI GCAGC 7 cut(s) 328, 331, 352, 501, 941, 1054, 1057
BccI CCATC 3 cut(s) 228, 531, 877
BceAI ACGGC 2 cut(s) 1030, 1134
BcgI CGANNNNNNTGC 4 cut(s) 347, 381, 959, 993
BciT130I CCWGG 4 cut(s) 277, 387, 424, 564
BciVI GTATCC 1 cut(s) 665
BclI TGATCA 1 cut(s) 97
BcnI CCSGG 1 cut(s) 215
BcoDI GTCTC 4 cut(s) 74, 903, 1083, 1223
BfaI CTAG 5 cut(s) 317, 348, 501, 632, 923
BfoI RGCGCY 1 cut(s) 815
BfuAI ACCTGC 1 cut(s) 590
BfuI GTATCC 1 cut(s) 665
BisI GCNGC 9 cut(s) 55, 90, 342, 345, 366, 490, 955, 1068, 1071
BlsI GCNGC 9 cut(s) 56, 91, 343, 346, 367, 491, 956, 1069, 1072
Bme1390I CCNGG 5 cut(s) 215, 277, 387, 424, 564
Bme18I GGWCC 3 cut(s) 29, 383, 566
BmgT120I GGNCC 3 cut(s) 29, 383, 566
BmiI GGNNCC 7 cut(s) 281, 384, 691, 813, 1122, 1152, 1198
BmrFI CCNGG 5 cut(s) 215, 277, 387, 424, 564
BmsI GCATC 6 cut(s) 479, 554, 727, 737, 742, 900
Bpu10I CCTNAGC 1 cut(s) 156
BpuEI CTTGAG 1 cut(s) 436
BpuMI CCSGG 1 cut(s) 215
BsaAI YACGTR 2 cut(s) 479, 1245
BsaHI GRCGYC 3 cut(s) 5, 812, 825
BsaI GGTCTC 1 cut(s) 1223
BsaJI CCNNGG 4 cut(s) 214, 386, 423, 820
BsaWI WCCGGW 1 cut(s) 406
BsaXI ACNNNNNCTCC 2 cut(s) 920, 950
Bsc4I CCNNNNNNNGG 2 cut(s) 213, 821
Bse1I ACTGG 3 cut(s) 552, 780, 1034
Bse3DI GCAATG 1 cut(s) 1124
BseBI CCWGG 4 cut(s) 277, 387, 424, 564
BseDI CCNNGG 4 cut(s) 214, 386, 423, 820
BseGI GGATG 3 cut(s) 53, 742, 785
BseLI CCNNNNNNNGG 2 cut(s) 213, 821
BseMI GCAATG 1 cut(s) 1124
BseMII CTCAG 3 cut(s) 753, 854, 914
BseNI ACTGG 3 cut(s) 552, 780, 1034
BseRI GAGGAG 4 cut(s) 75, 78, 81, 941
BseSI GKGCMC 1 cut(s) 188
BseXI GCAGC 7 cut(s) 328, 331, 352, 501, 941, 1054, 1057
BseYI CCCAGC 1 cut(s) 191
BshNI GGYRCC 1 cut(s) 811
BsiHKAI GWGCWC 2 cut(s) 77, 188
BsiSI CCGG 2 cut(s) 214, 407
BslFI GGGAC 2 cut(s) 403, 554
BslI CCNNNNNNNGG 2 cut(s) 213, 821
BsmAI GTCTC 4 cut(s) 74, 903, 1083, 1223
BsmFI GGGAC 2 cut(s) 403, 554
BsmI GAATGC 1 cut(s) 982
Bso31I GGTCTC 1 cut(s) 1223
Bsp1286I GDGCHC 2 cut(s) 77, 188
Bsp1407I TGTACA 1 cut(s) 149
Bsp143I GATC 7 cut(s) 22, 97, 607, 661, 942, 1150, 1196
BspACI CCGC 5 cut(s) 54, 57, 89, 492, 1062
BspCNI CTCAG 3 cut(s) 754, 853, 913
BspLI GGNNCC 7 cut(s) 281, 384, 691, 813, 1122, 1152, 1198
BspMI ACCTGC 1 cut(s) 590
BspPI GGATC 6 cut(s) 30, 937, 1145, 1158, 1191, 1204
BspQI GCTCTTC 1 cut(s) 883
BspT107I GGYRCC 1 cut(s) 811
BspTNI GGTCTC 1 cut(s) 1223
BsrDI GCAATG 1 cut(s) 1124
BsrGI TGTACA 1 cut(s) 149
BsrI ACTGG 3 cut(s) 552, 780, 1034
BssECI CCNNGG 4 cut(s) 214, 386, 423, 820
BssMI GATC 7 cut(s) 22, 97, 607, 661, 942, 1150, 1196
BssNI GRCGYC 3 cut(s) 5, 812, 825
BssT1I CCWWGG 1 cut(s) 820
Bst2UI CCWGG 4 cut(s) 277, 387, 424, 564
Bst4CI ACNGT 3 cut(s) 85, 704, 986
Bst6I CTCTTC 3 cut(s) 330, 883, 1086
BstACI GRCGYC 3 cut(s) 5, 812, 825
BstAUI TGTACA 1 cut(s) 149
BstBAI YACGTR 2 cut(s) 479, 1245
BstC8I GCNNGC 1 cut(s) 909
BstDEI CTNAG 5 cut(s) 33, 156, 762, 840, 900
BstF5I GGATG 3 cut(s) 53, 742, 785
BstH2I RGCGCY 1 cut(s) 815
BstHHI GCGC 1 cut(s) 814
BstKTI GATC 7 cut(s) 25, 100, 610, 664, 945, 1153, 1199
BstMAI GTCTC 4 cut(s) 74, 903, 1083, 1223
BstMBI GATC 7 cut(s) 22, 97, 607, 661, 942, 1150, 1196
BstMWI GCNNNNNNNGC 1 cut(s) 350
BstNI CCWGG 4 cut(s) 277, 387, 424, 564
BstNSI RCATGY 1 cut(s) 1096
BstSCI CCNGG 5 cut(s) 213, 275, 385, 422, 562
BstSLI GKGCMC 1 cut(s) 188
BstSNI TACGTA 1 cut(s) 479
BstV1I GCAGC 7 cut(s) 328, 331, 352, 501, 941, 1054, 1057
BstX2I RGATCY 3 cut(s) 942, 1150, 1196
BstYI RGATCY 3 cut(s) 942, 1150, 1196
BsuI GTATCC 1 cut(s) 665
BtsCI GGATG 3 cut(s) 53, 742, 785
BtsI GCAGTG 1 cut(s) 186
BtsIMutI CAGTG 3 cut(s) 90, 186, 773
BveI ACCTGC 1 cut(s) 590
Cac8I GCNNGC 1 cut(s) 909
CfoI GCGC 1 cut(s) 814
Cfr13I GGNCC 3 cut(s) 29, 383, 566
CseI GACGC 2 cut(s) 551, 814
Csp6I GTAC 5 cut(s) 150, 273, 759, 1096, 1246
CviAII CATG 3 cut(s) 791, 1046, 1093
CviQI GTAC 5 cut(s) 150, 273, 759, 1096, 1246
DdeI CTNAG 5 cut(s) 33, 156, 762, 840, 900
DinI GGCGCC 1 cut(s) 813
DpnI GATC 7 cut(s) 24, 99, 609, 663, 944, 1152, 1198
DpnII GATC 7 cut(s) 22, 97, 607, 661, 942, 1150, 1196
Eam1104I CTCTTC 3 cut(s) 330, 883, 1086
EarI CTCTTC 3 cut(s) 330, 883, 1086
EciI GGCGGA 1 cut(s) 72
Ecl136II GAGCTC 1 cut(s) 75
Eco105I TACGTA 1 cut(s) 479
Eco130I CCWWGG 1 cut(s) 820
Eco24I GRGCYC 1 cut(s) 77
Eco31I GGTCTC 1 cut(s) 1223
Eco47I GGWCC 3 cut(s) 29, 383, 566
Eco53kI GAGCTC 1 cut(s) 75
Eco57I CTGAAG 4 cut(s) 562, 1067, 1176, 1194
EcoICRI GAGCTC 1 cut(s) 75
EcoO109I RGGNCCY 2 cut(s) 29, 383
EcoRII CCWGG 4 cut(s) 275, 385, 422, 562
EcoT14I CCWWGG 1 cut(s) 820
EcoT38I GRGCYC 1 cut(s) 77
EgeI GGCGCC 1 cut(s) 813
EheI GGCGCC 1 cut(s) 813
ErhI CCWWGG 1 cut(s) 820
FaeI CATG 3 cut(s) 794, 1049, 1096
FalI AAGNNNNNCTT 4 cut(s) 243, 275, 450, 482
FaqI GGGAC 2 cut(s) 403, 554
FatI CATG 3 cut(s) 790, 1045, 1092
FauNDI CATATG 1 cut(s) 325
FbaI TGATCA 1 cut(s) 97
Fnu4HI GCNGC 9 cut(s) 55, 90, 342, 345, 366, 490, 955, 1068, 1071
FokI GGATG 3 cut(s) 60, 749, 772
FriOI GRGCYC 1 cut(s) 77
Fsp4HI GCNGC 9 cut(s) 55, 90, 342, 345, 366, 490, 955, 1068, 1071
FspBI CTAG 5 cut(s) 317, 348, 501, 632, 923
GlaI GCGC 1 cut(s) 813
GluI GCNGC 9 cut(s) 55, 90, 342, 345, 366, 490, 955, 1068, 1071
GsaI CCCAGC 1 cut(s) 195
HaeII RGCGCY 1 cut(s) 815
HapII CCGG 2 cut(s) 214, 407
HgaI GACGC 2 cut(s) 551, 814
HhaI GCGC 1 cut(s) 814
Hin1I GRCGYC 3 cut(s) 5, 812, 825
Hin1II CATG 3 cut(s) 794, 1049, 1096
Hin6I GCGC 1 cut(s) 812
HinP1I GCGC 1 cut(s) 812
HincII GTYRAC 1 cut(s) 707
HindII GTYRAC 1 cut(s) 707
HinfI GANTC 3 cut(s) 219, 713, 1042
HpaII CCGG 2 cut(s) 214, 407
HphI GGTGA 8 cut(s) 214, 248, 421, 614, 635, 858, 1123, 1228
Hpy166II GTNNAC 3 cut(s) 186, 524, 707
Hpy188I TCNGA 7 cut(s) 22, 79, 102, 733, 843, 1086, 1213
Hpy188III TCNNGA 4 cut(s) 647, 916, 1174, 1194
Hpy8I GTNNAC 3 cut(s) 186, 524, 707
Hpy99I CGWCG 4 cut(s) 10, 19, 22, 749
HpyAV CCTTC 6 cut(s) 121, 130, 292, 614, 922, 1200
HpyCH4III ACNGT 3 cut(s) 85, 704, 986
HpyCH4IV ACGT 3 cut(s) 478, 744, 1244
HpyCH4V TGCA 8 cut(s) 186, 442, 470, 740, 794, 957, 980, 1160
HpyF10VI GCNNNNNNNGC 1 cut(s) 350
HpyF3I CTNAG 5 cut(s) 33, 156, 762, 840, 900
HpySE526I ACGT 3 cut(s) 478, 744, 1244
Hsp92I GRCGYC 3 cut(s) 5, 812, 825
Hsp92II CATG 3 cut(s) 794, 1049, 1096
HspAI GCGC 1 cut(s) 812
KasI GGCGCC 1 cut(s) 811
Ksp22I TGATCA 1 cut(s) 97
Kzo9I GATC 7 cut(s) 22, 97, 607, 661, 942, 1150, 1196
LguI GCTCTTC 1 cut(s) 883
LmnI GCTCC 4 cut(s) 160, 320, 689, 1126
Lsp1109I GCAGC 7 cut(s) 328, 331, 352, 501, 941, 1054, 1057
LweI GCATC 6 cut(s) 479, 554, 727, 737, 742, 900
MaeI CTAG 5 cut(s) 317, 348, 501, 632, 923
MaeII ACGT 3 cut(s) 478, 744, 1244
MaeIII GTNAC 6 cut(s) 220, 409, 581, 623, 986, 1216
MalI GATC 7 cut(s) 24, 99, 609, 663, 944, 1152, 1198
MboI GATC 7 cut(s) 22, 97, 607, 661, 942, 1150, 1196
MflI RGATCY 3 cut(s) 942, 1150, 1196
MhlI GDGCHC 2 cut(s) 77, 188
MluCI AATT 1 cut(s) 400
Mly113I GGCGCC 1 cut(s) 812
MlyI GAGTC 2 cut(s) 228, 1051
MseI TTAA 5 cut(s) 123, 371, 768, 887, 1115
MslI CAYNNNNRTG 1 cut(s) 998
MspA1I CMGCKG 2 cut(s) 492, 1236
MspI CCGG 2 cut(s) 214, 407
MspR9I CCNGG 5 cut(s) 215, 277, 387, 424, 564
Mva1269I GAATGC 1 cut(s) 982
MvaI CCWGG 4 cut(s) 277, 387, 424, 564
MwoI GCNNNNNNNGC 1 cut(s) 350
NarI GGCGCC 1 cut(s) 812
NciI CCSGG 1 cut(s) 215
NdeI CATATG 1 cut(s) 325
NdeII GATC 7 cut(s) 22, 97, 607, 661, 942, 1150, 1196
NlaIII CATG 3 cut(s) 794, 1049, 1096
NlaIV GGNNCC 7 cut(s) 281, 384, 691, 813, 1122, 1152, 1198
NmuCI GTSAC 4 cut(s) 220, 409, 623, 1216
NspI RCATGY 1 cut(s) 1096
PaqCI CACCTGC 1 cut(s) 590
PciSI GCTCTTC 1 cut(s) 883
PcsI WCGNNNNNNNCGW 1 cut(s) 14
PctI GAATGC 1 cut(s) 982
PfeI GAWTC 1 cut(s) 713
PflMI CCANNNNNTGG 1 cut(s) 821
PkrI GCNGC 9 cut(s) 56, 91, 343, 346, 367, 491, 956, 1069, 1072
PleI GAGTC 2 cut(s) 227, 1050
PluTI GGCGCC 1 cut(s) 815
PpsI GAGTC 2 cut(s) 227, 1050
Ppu21I YACGTR 2 cut(s) 479, 1245
PpuMI RGGWCCY 2 cut(s) 29, 383
PsiI TTATAA 1 cut(s) 398
Psp124BI GAGCTC 1 cut(s) 77
Psp5II RGGWCCY 2 cut(s) 29, 383
Psp6I CCWGG 4 cut(s) 275, 385, 422, 562
PspFI CCCAGC 1 cut(s) 191
PspGI CCWGG 4 cut(s) 275, 385, 422, 562
PspN4I GGNNCC 7 cut(s) 281, 384, 691, 813, 1122, 1152, 1198
PspPI GGNCC 3 cut(s) 29, 383, 566
PspPPI RGGWCCY 2 cut(s) 29, 383
PsuI RGATCY 3 cut(s) 942, 1150, 1196
PvuII CAGCTG 1 cut(s) 1236
RsaI GTAC 5 cut(s) 151, 274, 760, 1097, 1247
RsaNI GTAC 5 cut(s) 150, 273, 759, 1096, 1246
RseI CAYNNNNRTG 1 cut(s) 998
SacI GAGCTC 1 cut(s) 77
SapI GCTCTTC 1 cut(s) 883
SaqAI TTAA 5 cut(s) 123, 371, 768, 887, 1115
SatI GCNGC 9 cut(s) 55, 90, 342, 345, 366, 490, 955, 1068, 1071
Sau3AI GATC 7 cut(s) 22, 97, 607, 661, 942, 1150, 1196
Sau96I GGNCC 3 cut(s) 29, 383, 566
SchI GAGTC 2 cut(s) 228, 1051
ScrFI CCNGG 5 cut(s) 215, 277, 387, 424, 564
SduI GDGCHC 2 cut(s) 77, 188
SfaNI GCATC 6 cut(s) 479, 554, 727, 737, 742, 900
SfoI GGCGCC 1 cut(s) 813
SinI GGWCC 3 cut(s) 29, 383, 566
SmiMI CAYNNNNRTG 1 cut(s) 998
SmlI CTYRAG 1 cut(s) 451
SmoI CTYRAG 1 cut(s) 451
SnaBI TACGTA 1 cut(s) 479
Sse9I AATT 1 cut(s) 400
SsiI CCGC 5 cut(s) 54, 57, 89, 492, 1062
SspDI GGCGCC 1 cut(s) 811
SspI AATATT 1 cut(s) 377
SspMI CTAG 5 cut(s) 317, 348, 501, 632, 923
SstI GAGCTC 1 cut(s) 77
StyD4I CCNGG 5 cut(s) 213, 275, 385, 422, 562
StyI CCWWGG 1 cut(s) 820
TaaI ACNGT 3 cut(s) 85, 704, 986
TaiI ACGT 3 cut(s) 481, 747, 1247
TaqI TCGA 1 cut(s) 747
TasI AATT 1 cut(s) 400
TatI WGTACW 1 cut(s) 149
TauI GCSGC 2 cut(s) 57, 92
TfiI GAWTC 1 cut(s) 713
Tru1I TTAA 5 cut(s) 123, 371, 768, 887, 1115
Tru9I TTAA 5 cut(s) 123, 371, 768, 887, 1115
TscAI CASTG 3 cut(s) 90, 193, 780
TseFI GTSAC 4 cut(s) 220, 409, 623, 1216
TseI GCWGC 7 cut(s) 341, 344, 365, 489, 954, 1067, 1070
Tsp45I GTSAC 4 cut(s) 220, 409, 623, 1216
TspDTI ATGAA 5 cut(s) 264, 348, 578, 708, 978
TspGWI ACGGA 1 cut(s) 171
TspRI CASTG 3 cut(s) 90, 193, 780
Van91I CCANNNNNTGG 1 cut(s) 821
VneI GTGCAC 1 cut(s) 184
VpaK11BI GGWCC 3 cut(s) 29, 383, 566
XapI RAATTY 1 cut(s) 400
XceI RCATGY 1 cut(s) 1096
XspI CTAG 5 cut(s) 317, 348, 501, 632, 923
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.