Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0011850.1

Orthogroup ID

OG0006364

Physical Location & Seq

Genomic Coordinates Reverse (-)

1750 .. 2959

Gene Structure 1210 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0011850.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 444 bp

atgccacgtttgggcgtctgctgtgaaggtaaaaagcaaaatggtgccagggtctctgccatgagcatcttgtcacggtcacctgcttataagagcttacaagagaaagcatcaattaagcaagaaaagaatgcagataatgacgagaatgaaaacaaaaatacgatccacaaaaaggactatggcaaggcaattgagaaatccacaagtcatgatgctggggatgagagactgaatgcttcattaggaatgagtggtggattgtctctccagaggaatgcattcccattggctccgttcttgtctgcgccactgctgaccaactacaacatgattgatccattagtagaccccattctttggacatctcttgctcctgttcttcccgaggttacaaagactgagaccagtgcaagtttcagtttatttcggcctgaggaatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

147

Amino Acids

16.08

Weight (kDa)

6.74

Isoelectric Point (pI)

57.88

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006364)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G41710 AT2G41710 AT2G41710 AT2G41710
fragaria_vesca	FvH4_6g24090 FvH4_6g24090 FvH4_6g24090
malus_domestica	MD12G1075200.v1.1 MD12G1079800.v1.1 MD14G1076000.v1.1
prunus_persica	Prupe.7G058300_v2.0.a1
pyrus_communis	pycom12g06470 pycom14g06450
rosa_chinensis	RchiOBHm_Chr3g0482661 RchiOBHm_Chr6g0258101
rosa_laevigata	RLG00000023334
rosa_multiflora	Rmu_co8231061.1_g000001 Rmu_sc0006069.1_g000007 Rmu_sc0011850.1_g000001 Rmu_sc0015893.1_g000013
rosa_roxburghii	Rroxscaffold_1G00037300 Rroxscaffold_6G00399050
rosa_rugosa	Rorug03G0197800
rosa_samantha	Rh3AG249100 Rh3BG284400 Rh3CG282300
rosa_wichuraiana	Rw3G022500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	90
AarI	CACCTGC	1 cut(s)	91
Acc36I	ACCTGC	1 cut(s)	91
AccB1I	GGYRCC	1 cut(s)	44
AccB7I	CCANNNNNTGG	1 cut(s)	360
AccI	GTMKAC	1 cut(s)	348
AclWI	GGATC	2 cut(s)	160, 332
AcyI	GRCGYC	1 cut(s)	15
AfiI	CCNNNNNNNGG	3 cut(s)	11, 175, 360
AjnI	CCWGG	1 cut(s)	47
AluBI	AGCT	1 cut(s)	96
AluI	AGCT	1 cut(s)	96
Alw26I	GTCTC	4 cut(s)	58, 223, 270, 398
AlwI	GGATC	2 cut(s)	160, 332
Ama87I	CYCGRG	1 cut(s)	386
AoxI	GGCC	1 cut(s)	431
Asp700I	GAANNNNTTC	1 cut(s)	281
AspLEI	GCGC	1 cut(s)	310
AsuHPI	GGTGA	1 cut(s)	72
AvaI	CYCGRG	1 cut(s)	386
AxyI	CCTNAGG	1 cut(s)	435
BanI	GGYRCC	1 cut(s)	44
BciT130I	CCWGG	1 cut(s)	49
BcoDI	GTCTC	4 cut(s)	58, 223, 270, 398
BfuAI	ACCTGC	1 cut(s)	91
Bme1390I	CCNGG	1 cut(s)	49
BmeT110I	CYCGRG	1 cut(s)	386
BmiI	GGNNCC	2 cut(s)	46, 294
BmrFI	CCNGG	1 cut(s)	49
BmsI	GCATC	3 cut(s)	75, 119, 205
BpmI	CTGGAG	1 cut(s)	254
BsaHI	GRCGYC	1 cut(s)	15
BsaI	GGTCTC	2 cut(s)	58, 398
BsaJI	CCNNGG	2 cut(s)	48, 387
Bsc4I	CCNNNNNNNGG	3 cut(s)	11, 175, 360
Bse1I	ACTGG	1 cut(s)	408
Bse21I	CCTNAGG	1 cut(s)	435
BseBI	CCWGG	1 cut(s)	49
BseDI	CCNNGG	2 cut(s)	48, 387
BseGI	GGATG	1 cut(s)	229
BseLI	CCNNNNNNNGG	3 cut(s)	11, 175, 360
BseMII	CTCAG	2 cut(s)	393, 426
BseNI	ACTGG	1 cut(s)	408
BseYI	CCCAGC	1 cut(s)	218
BshFI	GGCC	1 cut(s)	433
BshNI	GGYRCC	1 cut(s)	44
BsiHKCI	CYCGRG	1 cut(s)	386
BslI	CCNNNNNNNGG	3 cut(s)	11, 175, 360
BsmAI	GTCTC	4 cut(s)	58, 223, 270, 398
BsmI	GAATGC	4 cut(s)	136, 241, 281, 283
BsnI	GGCC	1 cut(s)	433
Bso31I	GGTCTC	2 cut(s)	58, 398
BsoBI	CYCGRG	1 cut(s)	386
Bsp143I	GATC	2 cut(s)	165, 337
BspANI	GGCC	1 cut(s)	433
BspCNI	CTCAG	2 cut(s)	394, 427
BspHI	TCATGA	1 cut(s)	211
BspLI	GGNNCC	2 cut(s)	46, 294
BspMI	ACCTGC	1 cut(s)	91
BspPI	GGATC	2 cut(s)	160, 332
BspT107I	GGYRCC	1 cut(s)	44
BspTNI	GGTCTC	2 cut(s)	58, 398
BsrI	ACTGG	1 cut(s)	408
BssECI	CCNNGG	2 cut(s)	48, 387
BssMI	GATC	2 cut(s)	165, 337
BssNI	GRCGYC	1 cut(s)	15
Bst2UI	CCWGG	1 cut(s)	49
Bst4CI	ACNGT	1 cut(s)	78
BstACI	GRCGYC	1 cut(s)	15
BstDEI	CTNAG	2 cut(s)	402, 435
BstEII	GGTNACC	1 cut(s)	78
BstF5I	GGATG	1 cut(s)	229
BstHHI	GCGC	1 cut(s)	310
BstKTI	GATC	2 cut(s)	168, 340
BstMAI	GTCTC	4 cut(s)	58, 223, 270, 398
BstMBI	GATC	2 cut(s)	165, 337
BstNI	CCWGG	1 cut(s)	49
BstPI	GGTNACC	1 cut(s)	78
BstSCI	CCNGG	1 cut(s)	47
Bsu36I	CCTNAGG	1 cut(s)	435
BsuRI	GGCC	1 cut(s)	433
BtsCI	GGATG	1 cut(s)	229
BtsI	GCAGTG	1 cut(s)	311
BtsIMutI	CAGTG	2 cut(s)	311, 415
BveI	ACCTGC	1 cut(s)	91
CciI	TCATGA	1 cut(s)	211
CfoI	GCGC	1 cut(s)	310
CseI	GACGC	1 cut(s)	4
CviAII	CATG	3 cut(s)	61, 212, 331
CviJI	RGCY	3 cut(s)	96, 293, 433
CviKI_1	RGCY	3 cut(s)	96, 293, 433
DdeI	CTNAG	2 cut(s)	402, 435
DpnI	GATC	2 cut(s)	167, 339
DpnII	GATC	2 cut(s)	165, 337
Eco31I	GGTCTC	2 cut(s)	58, 398
Eco81I	CCTNAGG	1 cut(s)	435
Eco88I	CYCGRG	1 cut(s)	386
Eco91I	GGTNACC	1 cut(s)	78
EcoO65I	GGTNACC	1 cut(s)	78
EcoRII	CCWGG	1 cut(s)	47
EcoT22I	ATGCAT	1 cut(s)	283
FaeI	CATG	3 cut(s)	64, 215, 334
FaiI	YATR	5 cut(s)	62, 90, 183, 213, 332
FatI	CATG	3 cut(s)	60, 211, 330
FblI	GTMKAC	1 cut(s)	348
FokI	GGATG	1 cut(s)	236
GlaI	GCGC	1 cut(s)	309
GsaI	CCCAGC	1 cut(s)	222
GsuI	CTGGAG	1 cut(s)	254
HaeIII	GGCC	1 cut(s)	433
HgaI	GACGC	1 cut(s)	4
HhaI	GCGC	1 cut(s)	310
Hin1I	GRCGYC	1 cut(s)	15
Hin1II	CATG	3 cut(s)	64, 215, 334
Hin6I	GCGC	1 cut(s)	308
HinP1I	GCGC	1 cut(s)	308
HphI	GGTGA	1 cut(s)	72
Hpy166II	GTNNAC	1 cut(s)	349
Hpy188III	TCNNGA	3 cut(s)	212, 271, 386
Hpy8I	GTNNAC	1 cut(s)	349
HpyAV	CCTTC	1 cut(s)	20
HpyCH4III	ACNGT	1 cut(s)	78
HpyCH4IV	ACGT	1 cut(s)	7
HpyCH4V	TGCA	3 cut(s)	134, 281, 413
HpyF3I	CTNAG	2 cut(s)	402, 435
HpySE526I	ACGT	1 cut(s)	7
Hsp92I	GRCGYC	1 cut(s)	15
Hsp92II	CATG	3 cut(s)	64, 215, 334
HspAI	GCGC	1 cut(s)	308
Kzo9I	GATC	2 cut(s)	165, 337
LmnI	GCTCC	2 cut(s)	298, 379
LpnPI	CCDG	7 cut(s)	34, 61, 96, 204, 284, 390, 421
LweI	GCATC	3 cut(s)	75, 119, 205
MaeII	ACGT	1 cut(s)	7
MaeIII	GTNAC	3 cut(s)	72, 78, 391
MalI	GATC	2 cut(s)	167, 339
MboI	GATC	2 cut(s)	165, 337
MboII	GAAGA	1 cut(s)	374
MfeI	CAATTG	1 cut(s)	192
MluCI	AATT	2 cut(s)	114, 192
MnlI	CCTC	3 cut(s)	267, 382, 430
Mph1103I	ATGCAT	1 cut(s)	283
MroXI	GAANNNNTTC	1 cut(s)	281
MseI	TTAA	1 cut(s)	117
MspR9I	CCNGG	1 cut(s)	49
MunI	CAATTG	1 cut(s)	192
Mva1269I	GAATGC	4 cut(s)	136, 241, 281, 283
MvaI	CCWGG	1 cut(s)	49
NdeII	GATC	2 cut(s)	165, 337
NlaIII	CATG	3 cut(s)	64, 215, 334
NlaIV	GGNNCC	2 cut(s)	46, 294
NmuCI	GTSAC	2 cut(s)	72, 78
NsiI	ATGCAT	1 cut(s)	283
PagI	TCATGA	1 cut(s)	211
PaqCI	CACCTGC	1 cut(s)	91
PctI	GAATGC	4 cut(s)	136, 241, 281, 283
PdmI	GAANNNNTTC	1 cut(s)	281
PflMI	CCANNNNNTGG	1 cut(s)	360
PsiI	TTATAA	1 cut(s)	90
Psp6I	CCWGG	1 cut(s)	47
PspEI	GGTNACC	1 cut(s)	78
PspFI	CCCAGC	1 cut(s)	218
PspGI	CCWGG	1 cut(s)	47
PspN4I	GGNNCC	2 cut(s)	46, 294
SaqAI	TTAA	1 cut(s)	117
Sau3AI	GATC	2 cut(s)	165, 337
ScrFI	CCNGG	1 cut(s)	49
SetI	ASST	5 cut(s)	10, 31, 85, 98, 393
SfaNI	GCATC	3 cut(s)	75, 119, 205
Sse9I	AATT	2 cut(s)	114, 192
StyD4I	CCNGG	1 cut(s)	47
TaaI	ACNGT	1 cut(s)	78
TaiI	ACGT	1 cut(s)	10
TasI	AATT	2 cut(s)	114, 192
Tru1I	TTAA	1 cut(s)	117
Tru9I	TTAA	1 cut(s)	117
TscAI	CASTG	2 cut(s)	318, 415
TseFI	GTSAC	2 cut(s)	72, 78
Tsp45I	GTSAC	2 cut(s)	72, 78
TspDTI	ATGAA	2 cut(s)	165, 231
TspGWI	ACGGA	1 cut(s)	285
TspRI	CASTG	2 cut(s)	318, 415
Van91I	CCANNNNNTGG	1 cut(s)	360
XmiI	GTMKAC	1 cut(s)	348
XmnI	GAANNNNTTC	1 cut(s)	281
Zsp2I	ATGCAT	1 cut(s)	283

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.