RLG00000023334

AP2-like ethylene-responsive transcription factor

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr5
Physical Location & Seq
Reverse (-)
22156659 .. 22160639
3981 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000023334

Sequence Viewer

Length: 1230 bp
ATGGCTTCGTCGTCCTCGGATCCTGGTCCGAAGACCGAAAGCGGAAGCGGCAGCGGCGGCGGAGCGGAGGCCTCGGAAGCCGCGGCGGCGGCGGCGGCGGCGGTGGCGACCGATCAGCAATTGCTTTACAGAGGGCTGAAGAAAGCGAAGAAGGAGAGAGGTTGCACGGCCAAAGAGCGCATCAGCAAAATGCCTCCCTGTGCCGCTGGAAAACGCAGCTCCATTTACCGCGGAGTCACTCGGTCAGTCCCTTTTTATTTGCTTACTCACAGAATGTTTTACTTGGGCGCGTACGATGATGAAGAGGCTGCAGCCAGAGCTTATGATCTTGCTGCCTTGAAATATTGGGGCCCTGGCACTCTGATTAATTTCCCTGTTACTGACTACACAAGAGATCTCGAAGAGATGCAGAATGTGTCAAGGGAGGAATATCTTGCATCTCTTCGCAGGAAGAGCAGTGGCTTCTCTAGAGGAATGTCTAAATATCGCGCGCTCTCAAGCCGTTGGGAGCCATCGTTTGGTCGTATGGGTGGATCTGAATACTTCGATAGCATCCATTATGGCACAGGAGATGATCCAGCAACAGACAATGAATTTTTAGGAACGTTTTGCATTGAAAGAAAGATTGATTTAACAAGTTACATCAAGTGGTGGGGGCCTAACAAAACTCGTCAAGCGGACAGCATGATAAAATCATCTGAGGAAGCAAAACATGGTTTTGCTGGAGATAGTGGAGGTGAACTGAAAACATTGGAATGGGAATCCCAGCCTACTGAACCATACCAGATGCCACGTTTGGGTGTCTGCCGTGAAGGTAAAAAGCATAATGGTGCCAGAGTCTCTGCCATGAGCATCTTGTCACGGTCACCTGCTTATAAGAGCTTACAAGAGAAAGCATCAATTAAGCAAGAAAAGAATGCAGATAATGACGAGAATGAAAACAAAAATACGATCCACAAAAAGGACTATGGCAAGGCAATTGAGAAATCCACAAGTCATGATGCTGGGGATGAGAGACTGAATGCTTCATTAGGAATGAGTGGTGGATTGTCTCTCCAGAGGAATGCATTCCCATTGACTCCGTTCTTGTCTGCGCCACTGCTGACCAACTACAACATGATTGATCCATTAGTAGACCCCATTCTTTGGACATCTCTTGCTCCTGTTATTCCCGAGGTTACAAAGACTGAGACCAGTGCAAGTTTCAGTTTATTTCGGCCTGAGGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

410

Amino Acids

44.97

Weight (kDa)

7.62

Isoelectric Point (pI)

54.67

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 876
AarI CACCTGC 1 cut(s) 877
Acc36I ACCTGC 1 cut(s) 877
AccB1I GGYRCC 1 cut(s) 830
AccB7I CCANNNNNTGG 2 cut(s) 518, 1146
AccBSI CCGCTC 1 cut(s) 65
AccI GTMKAC 1 cut(s) 1134
AccII CGCG 5 cut(s) 83, 231, 290, 489, 491
AclI AACGTT 1 cut(s) 605
AclWI GGATC 6 cut(s) 14, 27, 541, 569, 946, 1118
AcoI YGGCCR 1 cut(s) 168
AcsI RAATTY 1 cut(s) 593
AcuI CTGAAG 1 cut(s) 158
AfaI GTAC 1 cut(s) 293
AfiI CCNNNNNNNGG 4 cut(s) 518, 797, 961, 1146
AgsI TTSAA 2 cut(s) 340, 617
AjnI CCWGG 2 cut(s) 22, 352
AluBI AGCT 3 cut(s) 219, 320, 882
AluI AGCT 3 cut(s) 219, 320, 882
Alw26I GTCTC 4 cut(s) 844, 1009, 1056, 1184
AlwI GGATC 6 cut(s) 14, 27, 541, 569, 946, 1118
Ama87I CYCGRG 1 cut(s) 1172
AoxI GGCC 5 cut(s) 69, 168, 349, 656, 1217
ApaI GGGCCC 1 cut(s) 353
ApeKI GCWGC 5 cut(s) 51, 216, 308, 311, 332
ApoI RAATTY 1 cut(s) 593
AseI ATTAAT 1 cut(s) 366
Asp700I GAANNNNTTC 1 cut(s) 1067
AspLEI GCGC 5 cut(s) 180, 290, 491, 493, 1096
AspS9I GGNCC 4 cut(s) 26, 349, 350, 656
AsuHPI GGTGA 2 cut(s) 749, 858
AvaI CYCGRG 1 cut(s) 1172
AvaII GGWCC 1 cut(s) 26
AxyI CCTNAGG 1 cut(s) 1221
BaeGI GKGCMC 1 cut(s) 353
BamHI GGATCC 1 cut(s) 19
BanI GGYRCC 1 cut(s) 830
BanII GRGCYC 1 cut(s) 353
BbsI GAAGAC 1 cut(s) 38
BbvI GCAGC 5 cut(s) 63, 228, 295, 319, 323
BccI CCATC 1 cut(s) 520
BceAI ACGGC 3 cut(s) 183, 486, 792
BciT130I CCWGG 2 cut(s) 24, 354
BcoDI GTCTC 4 cut(s) 844, 1009, 1056, 1184
BfaI CTAG 1 cut(s) 468
BfmI CTRYAG 1 cut(s) 309
BfuAI ACCTGC 1 cut(s) 877
BglI GCCNNNNNGGC 1 cut(s) 86
BglII AGATCT 1 cut(s) 394
Bme1390I CCNGG 2 cut(s) 24, 354
Bme18I GGWCC 1 cut(s) 26
BmeT110I CYCGRG 1 cut(s) 1172
BmgT120I GGNCC 4 cut(s) 26, 349, 350, 656
BmiI GGNNCC 6 cut(s) 21, 350, 351, 510, 657, 832
BmrFI CCNGG 2 cut(s) 24, 354
BmsI GCATC 8 cut(s) 189, 396, 446, 561, 777, 861, 905, 991
BpiI GAAGAC 1 cut(s) 38
BpmI CTGGAG 2 cut(s) 744, 1040
BpuEI CTTGAG 1 cut(s) 481
BsaI GGTCTC 1 cut(s) 1184
BsaJI CCNNGG 6 cut(s) 15, 72, 81, 229, 352, 1173
BsaXI ACNNNNNCTCC 2 cut(s) 500, 530
Bsc4I CCNNNNNNNGG 4 cut(s) 518, 797, 961, 1146
Bse1I ACTGG 1 cut(s) 1194
Bse21I CCTNAGG 1 cut(s) 1221
BseBI CCWGG 2 cut(s) 24, 354
BseDI CCNNGG 6 cut(s) 15, 72, 81, 229, 352, 1173
BseGI GGATG 2 cut(s) 552, 1015
BseLI CCNNNNNNNGG 4 cut(s) 518, 797, 961, 1146
BseMII CTCAG 3 cut(s) 690, 1179, 1212
BseNI ACTGG 1 cut(s) 1194
BsePI GCGCGC 1 cut(s) 489
BseSI GKGCMC 1 cut(s) 353
BseXI GCAGC 5 cut(s) 63, 228, 295, 319, 323
BseYI CCCAGC 2 cut(s) 765, 1004
Bsh1236I CGCG 5 cut(s) 83, 231, 290, 489, 491
Bsh1285I CGRYCG 1 cut(s) 111
BshFI GGCC 5 cut(s) 71, 170, 351, 658, 1219
BshNI GGYRCC 1 cut(s) 830
BsiEI CGRYCG 1 cut(s) 111
BsiHKCI CYCGRG 1 cut(s) 1172
BsiWI CGTACG 1 cut(s) 291
BslFI GGGAC 1 cut(s) 233
BslI CCNNNNNNNGG 4 cut(s) 518, 797, 961, 1146
BsmAI GTCTC 4 cut(s) 844, 1009, 1056, 1184
BsmFI GGGAC 1 cut(s) 233
BsmI GAATGC 4 cut(s) 922, 1027, 1067, 1069
BsnI GGCC 5 cut(s) 71, 170, 351, 658, 1219
Bso31I GGTCTC 1 cut(s) 1184
BsoBI CYCGRG 1 cut(s) 1172
Bsp120I GGGCCC 1 cut(s) 349
Bsp1286I GDGCHC 1 cut(s) 353
Bsp143I GATC 8 cut(s) 19, 112, 325, 394, 533, 574, 951, 1123
BspANI GGCC 5 cut(s) 71, 170, 351, 658, 1219
BspCNI CTCAG 3 cut(s) 691, 1180, 1213
BspFNI CGCG 5 cut(s) 83, 231, 290, 489, 491
BspHI TCATGA 1 cut(s) 997
BspLI GGNNCC 6 cut(s) 21, 350, 351, 510, 657, 832
BspMAI CTGCAG 1 cut(s) 313
BspMI ACCTGC 1 cut(s) 877
BspPI GGATC 6 cut(s) 14, 27, 541, 569, 946, 1118
BspQI GCTCTTC 1 cut(s) 446
BspT107I GGYRCC 1 cut(s) 830
BspTNI GGTCTC 1 cut(s) 1184
BsrBI CCGCTC 1 cut(s) 65
BsrI ACTGG 1 cut(s) 1194
BssECI CCNNGG 6 cut(s) 15, 72, 81, 229, 352, 1173
BssHII GCGCGC 1 cut(s) 489
BssMI GATC 8 cut(s) 19, 112, 325, 394, 533, 574, 951, 1123
Bst2UI CCWGG 2 cut(s) 24, 354
Bst4CI ACNGT 1 cut(s) 864
Bst6I CTCTTC 4 cut(s) 297, 396, 446, 447
BstC8I GCNNGC 1 cut(s) 491
BstDEI CTNAG 3 cut(s) 699, 1188, 1221
BstDSI CCRYGG 2 cut(s) 81, 229
BstEII GGTNACC 1 cut(s) 864
BstF5I GGATG 2 cut(s) 552, 1015
BstFNI CGCG 5 cut(s) 83, 231, 290, 489, 491
BstHHI GCGC 5 cut(s) 180, 290, 491, 493, 1096
BstKTI GATC 8 cut(s) 22, 115, 328, 397, 536, 577, 954, 1126
BstMAI GTCTC 4 cut(s) 844, 1009, 1056, 1184
BstMBI GATC 8 cut(s) 19, 112, 325, 394, 533, 574, 951, 1123
BstMCI CGRYCG 1 cut(s) 111
BstNI CCWGG 2 cut(s) 24, 354
BstPI GGTNACC 1 cut(s) 864
BstSCI CCNGG 2 cut(s) 22, 352
BstSFI CTRYAG 1 cut(s) 309
BstSLI GKGCMC 1 cut(s) 353
BstUI CGCG 5 cut(s) 83, 231, 290, 489, 491
BstV1I GCAGC 5 cut(s) 63, 228, 295, 319, 323
BstV2I GAAGAC 1 cut(s) 38
BstX2I RGATCY 3 cut(s) 19, 394, 533
BstYI RGATCY 3 cut(s) 19, 394, 533
Bsu36I CCTNAGG 1 cut(s) 1221
BsuRI GGCC 5 cut(s) 71, 170, 351, 658, 1219
BtgI CCRYGG 2 cut(s) 81, 229
BtsCI GGATG 2 cut(s) 552, 1015
BtsI GCAGTG 2 cut(s) 463, 1097
BtsIMutI CAGTG 3 cut(s) 463, 1097, 1201
BveI ACCTGC 1 cut(s) 877
Cac8I GCNNGC 1 cut(s) 491
CciI TCATGA 1 cut(s) 997
CfoI GCGC 5 cut(s) 180, 290, 491, 493, 1096
Cfr13I GGNCC 4 cut(s) 26, 349, 350, 656
Cfr42I CCGCGG 2 cut(s) 84, 232
Csp6I GTAC 1 cut(s) 292
CviAII CATG 5 cut(s) 685, 713, 847, 998, 1117
CviQI GTAC 1 cut(s) 292
DdeI CTNAG 3 cut(s) 699, 1188, 1221
DpnI GATC 8 cut(s) 21, 114, 327, 396, 535, 576, 953, 1125
DpnII GATC 8 cut(s) 19, 112, 325, 394, 533, 574, 951, 1123
EaeI YGGCCR 1 cut(s) 168
Eam1104I CTCTTC 4 cut(s) 297, 396, 446, 447
EarI CTCTTC 4 cut(s) 297, 396, 446, 447
EciI GGCGGA 1 cut(s) 75
Eco147I AGGCCT 1 cut(s) 71
Eco24I GRGCYC 1 cut(s) 353
Eco31I GGTCTC 1 cut(s) 1184
Eco47I GGWCC 1 cut(s) 26
Eco57I CTGAAG 1 cut(s) 158
Eco81I CCTNAGG 1 cut(s) 1221
Eco88I CYCGRG 1 cut(s) 1172
Eco91I GGTNACC 1 cut(s) 864
EcoO109I RGGNCCY 3 cut(s) 349, 350, 656
EcoO65I GGTNACC 1 cut(s) 864
EcoRII CCWGG 2 cut(s) 22, 352
EcoT22I ATGCAT 1 cut(s) 1069
EcoT38I GRGCYC 1 cut(s) 353
FaeI CATG 5 cut(s) 688, 716, 850, 1001, 1120
FaqI GGGAC 1 cut(s) 233
FatI CATG 5 cut(s) 684, 712, 846, 997, 1116
FblI GTMKAC 1 cut(s) 1134
FokI GGATG 2 cut(s) 539, 1022
FriOI GRGCYC 1 cut(s) 353
FspBI CTAG 1 cut(s) 468
GlaI GCGC 5 cut(s) 179, 289, 490, 492, 1095
GsaI CCCAGC 2 cut(s) 769, 1008
GsuI CTGGAG 2 cut(s) 744, 1040
HaeIII GGCC 5 cut(s) 71, 170, 351, 658, 1219
HhaI GCGC 5 cut(s) 180, 290, 491, 493, 1096
Hin1II CATG 5 cut(s) 688, 716, 850, 1001, 1120
Hin6I GCGC 5 cut(s) 178, 288, 489, 491, 1094
HinP1I GCGC 5 cut(s) 178, 288, 489, 491, 1094
HinfI GANTC 4 cut(s) 234, 761, 837, 1078
HphI GGTGA 2 cut(s) 749, 858
Hpy166II GTNNAC 2 cut(s) 740, 1135
Hpy188I TCNGA 6 cut(s) 19, 30, 76, 363, 538, 700
Hpy188III TCNNGA 5 cut(s) 398, 468, 998, 1057, 1172
Hpy8I GTNNAC 2 cut(s) 740, 1135
Hpy99I CGWCG 1 cut(s) 13
HpyAV CCTTC 2 cut(s) 145, 806
HpyCH4III ACNGT 1 cut(s) 864
HpyCH4IV ACGT 2 cut(s) 605, 793
HpyCH4V TGCA 8 cut(s) 165, 311, 409, 437, 612, 920, 1067, 1199
HpyF3I CTNAG 3 cut(s) 699, 1188, 1221
HpySE526I ACGT 2 cut(s) 605, 793
Hsp92II CATG 5 cut(s) 688, 716, 850, 1001, 1120
HspAI GCGC 5 cut(s) 178, 288, 489, 491, 1094
KspI CCGCGG 2 cut(s) 84, 232
Kzo9I GATC 8 cut(s) 19, 112, 325, 394, 533, 574, 951, 1123
LguI GCTCTTC 1 cut(s) 446
LmnI GCTCC 4 cut(s) 62, 224, 508, 1165
Lsp1109I GCAGC 5 cut(s) 63, 228, 295, 319, 323
LweI GCATC 8 cut(s) 189, 396, 446, 561, 777, 861, 905, 991
MaeI CTAG 1 cut(s) 468
MaeII ACGT 2 cut(s) 605, 793
MaeIII GTNAC 6 cut(s) 235, 376, 638, 858, 864, 1177
MalI GATC 8 cut(s) 21, 114, 327, 396, 535, 576, 953, 1125
MbiI CCGCTC 1 cut(s) 65
MboI GATC 8 cut(s) 19, 112, 325, 394, 533, 574, 951, 1123
MboII GAAGA 7 cut(s) 43, 151, 160, 314, 413, 434, 463
MfeI CAATTG 2 cut(s) 119, 978
MflI RGATCY 3 cut(s) 19, 394, 533
MhlI GDGCHC 1 cut(s) 353
MluCI AATT 5 cut(s) 119, 367, 593, 900, 978
MlyI GAGTC 3 cut(s) 243, 846, 1072
Mph1103I ATGCAT 1 cut(s) 1069
MroXI GAANNNNTTC 1 cut(s) 1067
MseI TTAA 3 cut(s) 366, 632, 903
MslI CAYNNNNRTG 2 cut(s) 754, 828
MspA1I CMGCKG 4 cut(s) 54, 83, 206, 231
MspR9I CCNGG 2 cut(s) 24, 354
MunI CAATTG 2 cut(s) 119, 978
Mva1269I GAATGC 4 cut(s) 922, 1027, 1067, 1069
MvaI CCWGG 2 cut(s) 24, 354
MvnI CGCG 5 cut(s) 83, 231, 290, 489, 491
NdeII GATC 8 cut(s) 19, 112, 325, 394, 533, 574, 951, 1123
NlaIII CATG 5 cut(s) 688, 716, 850, 1001, 1120
NlaIV GGNNCC 6 cut(s) 21, 350, 351, 510, 657, 832
NmuCI GTSAC 3 cut(s) 235, 858, 864
NsiI ATGCAT 1 cut(s) 1069
PagI TCATGA 1 cut(s) 997
PaqCI CACCTGC 1 cut(s) 877
PauI GCGCGC 1 cut(s) 489
PceI AGGCCT 1 cut(s) 71
PciSI GCTCTTC 1 cut(s) 446
PctI GAATGC 4 cut(s) 922, 1027, 1067, 1069
PdmI GAANNNNTTC 1 cut(s) 1067
PfeI GAWTC 1 cut(s) 761
Pfl23II CGTACG 1 cut(s) 291
PflMI CCANNNNNTGG 2 cut(s) 518, 1146
PleI GAGTC 3 cut(s) 242, 845, 1072
PpsI GAGTC 3 cut(s) 242, 845, 1072
PshBI ATTAAT 1 cut(s) 366
PsiI TTATAA 1 cut(s) 876
Psp1406I AACGTT 1 cut(s) 605
Psp6I CCWGG 2 cut(s) 22, 352
PspEI GGTNACC 1 cut(s) 864
PspFI CCCAGC 2 cut(s) 765, 1004
PspGI CCWGG 2 cut(s) 22, 352
PspLI CGTACG 1 cut(s) 291
PspN4I GGNNCC 6 cut(s) 21, 350, 351, 510, 657, 832
PspOMI GGGCCC 1 cut(s) 349
PspPI GGNCC 4 cut(s) 26, 349, 350, 656
PstI CTGCAG 1 cut(s) 313
PsuI RGATCY 3 cut(s) 19, 394, 533
PteI GCGCGC 1 cut(s) 489
RsaI GTAC 1 cut(s) 293
RsaNI GTAC 1 cut(s) 292
RseI CAYNNNNRTG 2 cut(s) 754, 828
SacII CCGCGG 2 cut(s) 84, 232
SapI GCTCTTC 1 cut(s) 446
SaqAI TTAA 3 cut(s) 366, 632, 903
Sau3AI GATC 8 cut(s) 19, 112, 325, 394, 533, 574, 951, 1123
Sau96I GGNCC 4 cut(s) 26, 349, 350, 656
SchI GAGTC 3 cut(s) 243, 846, 1072
ScrFI CCNGG 2 cut(s) 24, 354
SduI GDGCHC 1 cut(s) 353
SfaNI GCATC 8 cut(s) 189, 396, 446, 561, 777, 861, 905, 991
SfcI CTRYAG 1 cut(s) 309
Sfr303I CCGCGG 2 cut(s) 84, 232
SgrBI CCGCGG 2 cut(s) 84, 232
SinI GGWCC 1 cut(s) 26
SmiMI CAYNNNNRTG 2 cut(s) 754, 828
SmlI CTYRAG 1 cut(s) 496
SmoI CTYRAG 1 cut(s) 496
Sse9I AATT 5 cut(s) 119, 367, 593, 900, 978
SseBI AGGCCT 1 cut(s) 71
SspI AATATT 1 cut(s) 344
SspMI CTAG 1 cut(s) 468
StuI AGGCCT 1 cut(s) 71
StyD4I CCNGG 2 cut(s) 22, 352
TaaI ACNGT 1 cut(s) 864
TaiI ACGT 2 cut(s) 608, 796
TaqI TCGA 2 cut(s) 399, 546
TaqII GACCGA 3 cut(s) 50, 125, 231
TasI AATT 5 cut(s) 119, 367, 593, 900, 978
TfiI GAWTC 1 cut(s) 761
Tru1I TTAA 3 cut(s) 366, 632, 903
Tru9I TTAA 3 cut(s) 366, 632, 903
TscAI CASTG 3 cut(s) 463, 1104, 1201
TseFI GTSAC 3 cut(s) 235, 858, 864
TseI GCWGC 5 cut(s) 51, 216, 308, 311, 332
Tsp45I GTSAC 3 cut(s) 235, 858, 864
TspDTI ATGAA 4 cut(s) 315, 606, 951, 1017
TspGWI ACGGA 1 cut(s) 1071
TspRI CASTG 3 cut(s) 463, 1104, 1201
Van91I CCANNNNNTGG 2 cut(s) 518, 1146
VpaK11BI GGWCC 1 cut(s) 26
VspI ATTAAT 1 cut(s) 366
XapI RAATTY 1 cut(s) 593
XbaI TCTAGA 1 cut(s) 467
XmiI GTMKAC 1 cut(s) 1134
XmnI GAANNNNTTC 1 cut(s) 1067
XspI CTAG 1 cut(s) 468
Zsp2I ATGCAT 1 cut(s) 1069
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.