Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0006364

Physical Location & Seq

Genomic Coordinates Forward (+)

17373820 .. 17375515

Gene Structure 1696 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0197800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1161 bp

ATGGGCTGCGTATCTTCCAAACTGTTCAAGAACGATTTCAAAGAAGAGGTCACCATCACCCACGGCGCCCAGTGCCTCAACCACGTCGTCTCCCTCACTTCCAGCACTTACGGCCTTCTAAATCTCGACAATGACCCACCGGTTGTTTCCGAGAATAATAACTTCAAGAAATCTTCTCCGAGGAAGGAAGATCCGGAGGTTATCAATGCTTGGGAACTGATGGAGGGGCTGGAGGAAGCGGTGCCGGTCAAGAGGAGTCCCAAGTCGCGCTCTGTTCTTCGGGGGTTTGCGGATTTCGATGCGAGGAGTCCGTTGAAGTTGCTGAACCAGTTCGGGTCGCCGATGAAGGGGAAGCGATTTGGGGGGAAGGAGAATAAGGGGAGAGTGAATGGGTTGGGGTATAGTCCCAAAGGGGTGCCGAAATCGAATATTGGGTCGGAGAATTCTTGCAAGAAAGCGCTGAATTTGAGTCCGGCGGTTAAAGGGTCTCCGATTTCTGCAAAACGGAGGAGTTTTGGGAGCGATTCGTCCAGGAGGAAGAGTTTTAGTCCCCTGTTTGATCCAGAGCTGGTTGCTTCTTATGAGAAGGAAATGTCTGAAGAGGAAGTGCAGATCAAGAGGATGGTGCTGCCTTCGCCAAAAACCAGGAAAGTGAGGTATTCTAACCGAGATTCGGAATCTGTGCTGAAGTTGTTTGAGAAGAAATGCCCTCCTGGTGGCGAGAATGCTGTTGTTATTTACACGACTACATTGAGGGGGATTAGGAAGACTTTTGAGGATTGCAACAATGTGAGGTCAATCGTGGAGTCTCACCTCGTTCGCGTGCTCGAGAGAGATATATCGATGGATTCGGGGTTTAAGGAGGAGATAAGGGGGCTAATGGGGACTAAAGAGGTTAGGGTTCCGCTTGTGTTTGTGAAGGGGAGGTTGATTGGTGGTGCTGATGAGATTGTGAAGTTGGAGGAGGAAGGAAAGCTCGGGGTTTTGTTCGATGGGATTCCGAAAGCGCTTGTTGGGTGCCAAGGTTGTGCTGGAATGAGGTTTGTGATGTGCGTGGAGTGCAATGGAAGCTGCAAGGTTTTGGATGAGGGGCAAAAGAAGATGGCCAAATGTGGTGAGTGCAATGAGAATGGTTTGATTCATTGCCCACTTTGTTGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

386

Amino Acids

42.51

Weight (kDa)

9.03

Isoelectric Point (pI)

52.23

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glutaredoxin	PF00462	244 - 311	2.3e-09	Glutaredoxin
GRXCR1-2_C	PF23733	340 - 386	6e-17	GRXCR1/2, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006364)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G41710 AT2G41710 AT2G41710 AT2G41710
fragaria_vesca	FvH4_6g24090 FvH4_6g24090 FvH4_6g24090
malus_domestica	MD12G1075200.v1.1 MD12G1079800.v1.1 MD14G1076000.v1.1
prunus_persica	Prupe.7G058300_v2.0.a1
pyrus_communis	pycom12g06470 pycom14g06450
rosa_chinensis	RchiOBHm_Chr3g0482661 RchiOBHm_Chr6g0258101
rosa_laevigata	RLG00000023334
rosa_multiflora	Rmu_co8231061.1_g000001 Rmu_sc0006069.1_g000007 Rmu_sc0011850.1_g000001 Rmu_sc0015893.1_g000013
rosa_roxburghii	Rroxscaffold_1G00037300 Rroxscaffold_6G00399050
rosa_rugosa	Rorug03G0197800
rosa_samantha	Rh3AG249100 Rh3BG284400 Rh3CG282300
rosa_wichuraiana	Rw3G022500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	4 cut(s)	65, 241, 415, 1017
AccII	CGCG	2 cut(s)	268, 822
AccIII	TCCGGA	1 cut(s)	193
AciI	CCGC	4 cut(s)	239, 290, 476, 905
AclWI	GGATC	2 cut(s)	185, 554
AcoI	YGGCCR	1 cut(s)	1104
AcsI	RAATTY	2 cut(s)	442, 463
AcuI	CTGAAG	2 cut(s)	618, 707
AcyI	GRCGYC	1 cut(s)	66
AfeI	AGCGCT	2 cut(s)	459, 1008
AfiI	CCNNNNNNNGG	3 cut(s)	347, 673, 716
AgeI	ACCGGT	1 cut(s)	139
AgsI	TTSAA	4 cut(s)	28, 40, 166, 316
AjiI	CACGTC	1 cut(s)	85
AjnI	CCWGG	3 cut(s)	530, 644, 712
AluBI	AGCT	3 cut(s)	568, 976, 1071
AluI	AGCT	3 cut(s)	568, 976, 1071
Alw21I	GWGCWC	1 cut(s)	828
Alw26I	GTCTC	3 cut(s)	94, 492, 813
AlwI	GGATC	2 cut(s)	185, 554
Ama87I	CYCGRG	2 cut(s)	827, 977
Aor13HI	TCCGGA	1 cut(s)	193
Aor51HI	AGCGCT	2 cut(s)	459, 1008
AoxI	GGCC	2 cut(s)	112, 1104
ApeKI	GCWGC	3 cut(s)	6, 628, 1071
ApoI	RAATTY	2 cut(s)	442, 463
ArsI	GACNNNNNNTTYG	4 cut(s)	33, 65, 419, 451
AsiGI	ACCGGT	1 cut(s)	139
Asp700I	GAANNNNTTC	2 cut(s)	35, 329
AspLEI	GCGC	4 cut(s)	68, 270, 460, 1009
AsuHPI	GGTGA	4 cut(s)	43, 49, 803, 1127
AvaI	CYCGRG	2 cut(s)	827, 977
BalI	TGGCCA	1 cut(s)	1106
BanI	GGYRCC	4 cut(s)	65, 241, 415, 1017
BbsI	GAAGAC	1 cut(s)	773
Bbv12I	GWGCWC	1 cut(s)	828
BbvI	GCAGC	2 cut(s)	615, 1058
BccI	CCATC	6 cut(s)	62, 214, 616, 838, 986, 1096
BceAI	ACGGC	2 cut(s)	79, 127
BciT130I	CCWGG	3 cut(s)	532, 646, 714
BcoDI	GTCTC	3 cut(s)	94, 492, 813
BfoI	RGCGCY	3 cut(s)	69, 461, 1010
BisI	GCNGC	3 cut(s)	7, 629, 1072
BlsI	GCNGC	3 cut(s)	8, 630, 1073
Bme1390I	CCNGG	3 cut(s)	532, 646, 714
BmeT110I	CYCGRG	2 cut(s)	827, 977
BmgBI	CACGTC	1 cut(s)	85
BmiI	GGNNCC	5 cut(s)	67, 243, 417, 903, 1019
BmrFI	CCNGG	3 cut(s)	532, 646, 714
BmrI	ACTGGG	1 cut(s)	64
BmsI	GCATC	1 cut(s)	289
BmuI	ACTGGG	1 cut(s)	64
BpiI	GAAGAC	1 cut(s)	773
BpmI	CTGGAG	1 cut(s)	251
Bsa29I	ATCGAT	1 cut(s)	842
BsaHI	GRCGYC	1 cut(s)	66
BsaI	GGTCTC	1 cut(s)	492
BsaJI	CCNNGG	3 cut(s)	61, 179, 1021
BsaWI	WCCGGW	2 cut(s)	139, 193
BsaXI	ACNNNNNCTCC	4 cut(s)	74, 104, 526, 556
Bsc4I	CCNNNNNNNGG	3 cut(s)	347, 673, 716
Bse118I	RCCGGY	2 cut(s)	139, 244
Bse1I	ACTGG	2 cut(s)	70, 328
Bse3DI	GCAATG	3 cut(s)	1069, 1129, 1141
BseAI	TCCGGA	1 cut(s)	193
BseBI	CCWGG	3 cut(s)	532, 646, 714
BseCI	ATCGAT	1 cut(s)	842
BseDI	CCNNGG	3 cut(s)	61, 179, 1021
BseGI	GGATG	2 cut(s)	627, 1090
BseLI	CCNNNNNNNGG	3 cut(s)	347, 673, 716
BseMI	GCAATG	3 cut(s)	1069, 1129, 1141
BseNI	ACTGG	2 cut(s)	70, 328
BseRI	GAGGAG	5 cut(s)	268, 319, 523, 878, 977
BseXI	GCAGC	2 cut(s)	615, 1058
BsgI	GTGCAG	1 cut(s)	629
Bsh1236I	CGCG	2 cut(s)	268, 822
BshFI	GGCC	2 cut(s)	114, 1106
BshNI	GGYRCC	4 cut(s)	65, 241, 415, 1017
BshTI	ACCGGT	1 cut(s)	139
BshVI	ATCGAT	1 cut(s)	842
BsiHKAI	GWGCWC	1 cut(s)	828
BsiHKCI	CYCGRG	2 cut(s)	827, 977
BsiSI	CCGG	4 cut(s)	140, 194, 245, 473
BslFI	GGGAC	4 cut(s)	243, 390, 534, 898
BslI	CCNNNNNNNGG	3 cut(s)	347, 673, 716
BsmAI	GTCTC	3 cut(s)	94, 492, 813
BsmBI	CGTCTC	1 cut(s)	94
BsmFI	GGGAC	4 cut(s)	243, 390, 534, 898
BsmI	GAATGC	1 cut(s)	730
BsnI	GGCC	2 cut(s)	114, 1106
Bso31I	GGTCTC	1 cut(s)	492
BsoBI	CYCGRG	2 cut(s)	827, 977
Bsp1286I	GDGCHC	1 cut(s)	828
Bsp13I	TCCGGA	1 cut(s)	193
Bsp143I	GATC	3 cut(s)	190, 559, 612
BspACI	CCGC	4 cut(s)	239, 290, 476, 905
BspANI	GGCC	2 cut(s)	114, 1106
BspDI	ATCGAT	1 cut(s)	842
BspEI	TCCGGA	1 cut(s)	193
BspFNI	CGCG	2 cut(s)	268, 822
BspLI	GGNNCC	5 cut(s)	67, 243, 417, 903, 1019
BspPI	GGATC	2 cut(s)	185, 554
BspT107I	GGYRCC	4 cut(s)	65, 241, 415, 1017
BspTNI	GGTCTC	1 cut(s)	492
BsrDI	GCAATG	3 cut(s)	1069, 1129, 1141
BsrFI	RCCGGY	2 cut(s)	139, 244
BsrI	ACTGG	2 cut(s)	70, 328
BssAI	RCCGGY	2 cut(s)	139, 244
BssECI	CCNNGG	3 cut(s)	61, 179, 1021
BssMI	GATC	3 cut(s)	190, 559, 612
BssNI	GRCGYC	1 cut(s)	66
BssT1I	CCWWGG	1 cut(s)	1021
Bst2UI	CCWGG	3 cut(s)	532, 646, 714
Bst4CI	ACNGT	1 cut(s)	24
Bst6I	CTCTTC	3 cut(s)	39, 533, 594
BstACI	GRCGYC	1 cut(s)	66
BstC8I	GCNNGC	1 cut(s)	824
BstDSI	CCRYGG	1 cut(s)	61
BstEII	GGTNACC	1 cut(s)	49
BstF5I	GGATG	2 cut(s)	627, 1090
BstFNI	CGCG	2 cut(s)	268, 822
BstH2I	RGCGCY	3 cut(s)	69, 461, 1010
BstHHI	GCGC	4 cut(s)	68, 270, 460, 1009
BstKTI	GATC	3 cut(s)	193, 562, 615
BstMAI	GTCTC	3 cut(s)	94, 492, 813
BstMBI	GATC	3 cut(s)	190, 559, 612
BstMWI	GCNNNNNNNGC	5 cut(s)	72, 111, 634, 1059, 1068
BstNI	CCWGG	3 cut(s)	532, 646, 714
BstPI	GGTNACC	1 cut(s)	49
BstSCI	CCNGG	3 cut(s)	530, 644, 712
BstUI	CGCG	2 cut(s)	268, 822
BstV1I	GCAGC	2 cut(s)	615, 1058
BstV2I	GAAGAC	1 cut(s)	773
BstX2I	RGATCY	1 cut(s)	190
BstYI	RGATCY	1 cut(s)	190
Bsu15I	ATCGAT	1 cut(s)	842
BsuRI	GGCC	2 cut(s)	114, 1106
BsuTUI	ATCGAT	1 cut(s)	842
BtgI	CCRYGG	1 cut(s)	61
BtrI	CACGTC	1 cut(s)	85
BtsCI	GGATG	2 cut(s)	627, 1090
BtsIMutI	CAGTG	1 cut(s)	77
Cac8I	GCNNGC	1 cut(s)	824
CfoI	GCGC	4 cut(s)	68, 270, 460, 1009
Cfr10I	RCCGGY	2 cut(s)	139, 244
ClaI	ATCGAT	1 cut(s)	842
CspAI	ACCGGT	1 cut(s)	139
CviJI	RGCY	8 cut(s)	6, 114, 229, 568, 877, 976, 1071, 1106
CviKI_1	RGCY	8 cut(s)	6, 114, 229, 568, 877, 976, 1071, 1106
DinI	GGCGCC	1 cut(s)	67
DpnI	GATC	3 cut(s)	192, 561, 614
DpnII	GATC	3 cut(s)	190, 559, 612
EaeI	YGGCCR	1 cut(s)	1104
Eam1104I	CTCTTC	3 cut(s)	39, 533, 594
EarI	CTCTTC	3 cut(s)	39, 533, 594
Eco130I	CCWWGG	1 cut(s)	1021
Eco31I	GGTCTC	1 cut(s)	492
Eco47III	AGCGCT	2 cut(s)	459, 1008
Eco57I	CTGAAG	2 cut(s)	618, 707
Eco88I	CYCGRG	2 cut(s)	827, 977
Eco91I	GGTNACC	1 cut(s)	49
EcoO65I	GGTNACC	1 cut(s)	49
EcoRI	GAATTC	1 cut(s)	442
EcoRII	CCWGG	3 cut(s)	530, 644, 712
EcoT14I	CCWWGG	1 cut(s)	1021
EgeI	GGCGCC	1 cut(s)	67
EheI	GGCGCC	1 cut(s)	67
ErhI	CCWWGG	1 cut(s)	1021
Esp3I	CGTCTC	1 cut(s)	94
FaiI	YATR	3 cut(s)	402, 582, 839
FaqI	GGGAC	4 cut(s)	243, 390, 534, 898
Fnu4HI	GCNGC	3 cut(s)	7, 629, 1072
FokI	GGATG	2 cut(s)	634, 1097
Fsp4HI	GCNGC	3 cut(s)	7, 629, 1072
GlaI	GCGC	4 cut(s)	67, 269, 459, 1008
GluI	GCNGC	3 cut(s)	7, 629, 1072
GsuI	CTGGAG	1 cut(s)	251
HaeII	RGCGCY	3 cut(s)	69, 461, 1010
HaeIII	GGCC	2 cut(s)	114, 1106
HapII	CCGG	4 cut(s)	140, 194, 245, 473
HhaI	GCGC	4 cut(s)	68, 270, 460, 1009
Hin1I	GRCGYC	1 cut(s)	66
Hin6I	GCGC	4 cut(s)	66, 268, 458, 1007
HinP1I	GCGC	4 cut(s)	66, 268, 458, 1007
HpaII	CCGG	4 cut(s)	140, 194, 245, 473
HphI	GGTGA	4 cut(s)	43, 49, 803, 1127
Hpy188I	TCNGA	7 cut(s)	151, 180, 439, 492, 598, 676, 1002
Hpy188III	TCNNGA	8 cut(s)	28, 125, 166, 194, 250, 563, 616, 829
Hpy99I	CGWCG	1 cut(s)	89
HpyAV	CCTTC	8 cut(s)	125, 178, 340, 361, 580, 642, 913, 962
HpyCH4III	ACNGT	1 cut(s)	24
HpyCH4IV	ACGT	1 cut(s)	84
HpyCH4V	TGCA	7 cut(s)	450, 500, 610, 783, 1062, 1074, 1122
HpyF10VI	GCNNNNNNNGC	5 cut(s)	72, 111, 634, 1059, 1068
HpySE526I	ACGT	1 cut(s)	84
Hsp92I	GRCGYC	1 cut(s)	66
HspAI	GCGC	4 cut(s)	66, 268, 458, 1007
KasI	GGCGCC	1 cut(s)	65
Kpn2I	TCCGGA	1 cut(s)	193
Kzo9I	GATC	3 cut(s)	190, 559, 612
LmnI	GCTCC	1 cut(s)	519
Lsp1109I	GCAGC	2 cut(s)	615, 1058
LweI	GCATC	1 cut(s)	289
MaeII	ACGT	1 cut(s)	84
MaeIII	GTNAC	1 cut(s)	49
MalI	GATC	3 cut(s)	192, 561, 614
MboI	GATC	3 cut(s)	190, 559, 612
MflI	RGATCY	1 cut(s)	190
MhlI	GDGCHC	1 cut(s)	828
MlsI	TGGCCA	1 cut(s)	1106
MluCI	AATT	2 cut(s)	442, 463
MluNI	TGGCCA	1 cut(s)	1106
Mly113I	GGCGCC	1 cut(s)	66
MlyI	GAGTC	4 cut(s)	265, 316, 478, 815
MmeI	TCCRAC	2 cut(s)	417, 939
Mox20I	TGGCCA	1 cut(s)	1106
MroI	TCCGGA	1 cut(s)	193
MroXI	GAANNNNTTC	2 cut(s)	35, 329
MscI	TGGCCA	1 cut(s)	1106
MseI	TTAA	2 cut(s)	480, 858
Msp20I	TGGCCA	1 cut(s)	1106
MspI	CCGG	4 cut(s)	140, 194, 245, 473
MspR9I	CCNGG	3 cut(s)	532, 646, 714
Mva1269I	GAATGC	1 cut(s)	730
MvaI	CCWGG	3 cut(s)	532, 646, 714
MvnI	CGCG	2 cut(s)	268, 822
MwoI	GCNNNNNNNGC	5 cut(s)	72, 111, 634, 1059, 1068
NarI	GGCGCC	1 cut(s)	66
NdeII	GATC	3 cut(s)	190, 559, 612
NlaIV	GGNNCC	5 cut(s)	67, 243, 417, 903, 1019
NmuCI	GTSAC	1 cut(s)	49
PaeR7I	CTCGAG	1 cut(s)	827
PctI	GAATGC	1 cut(s)	730
PdmI	GAANNNNTTC	2 cut(s)	35, 329
PfeI	GAWTC	6 cut(s)	524, 671, 677, 848, 997, 1138
PfoI	TCCNGGA	1 cut(s)	530
PinAI	ACCGGT	1 cut(s)	139
PkrI	GCNGC	3 cut(s)	8, 630, 1073
PleI	GAGTC	4 cut(s)	264, 315, 477, 814
PluTI	GGCGCC	1 cut(s)	69
PpsI	GAGTC	4 cut(s)	264, 315, 477, 814
Psp6I	CCWGG	3 cut(s)	530, 644, 712
PspEI	GGTNACC	1 cut(s)	49
PspGI	CCWGG	3 cut(s)	530, 644, 712
PspN4I	GGNNCC	5 cut(s)	67, 243, 417, 903, 1019
PsuI	RGATCY	1 cut(s)	190
SaqAI	TTAA	2 cut(s)	480, 858
SatI	GCNGC	3 cut(s)	7, 629, 1072
Sau3AI	GATC	3 cut(s)	190, 559, 612
SchI	GAGTC	4 cut(s)	265, 316, 478, 815
ScrFI	CCNGG	3 cut(s)	532, 646, 714
SduI	GDGCHC	1 cut(s)	828
SfaNI	GCATC	1 cut(s)	289
SfoI	GGCGCC	1 cut(s)	67
Sfr274I	CTCGAG	1 cut(s)	827
SlaI	CTCGAG	1 cut(s)	827
SmlI	CTYRAG	1 cut(s)	827
SmoI	CTYRAG	1 cut(s)	827
Sse9I	AATT	2 cut(s)	442, 463
SsiI	CCGC	4 cut(s)	239, 290, 476, 905
SspDI	GGCGCC	1 cut(s)	65
SspI	AATATT	1 cut(s)	430
StyD4I	CCNGG	3 cut(s)	530, 644, 712
StyI	CCWWGG	1 cut(s)	1021
TaaI	ACNGT	1 cut(s)	24
TaiI	ACGT	1 cut(s)	87
TaqI	TCGA	6 cut(s)	126, 297, 425, 828, 842, 990
TasI	AATT	2 cut(s)	442, 463
TfiI	GAWTC	6 cut(s)	524, 671, 677, 848, 997, 1138
Tru1I	TTAA	2 cut(s)	480, 858
Tru9I	TTAA	2 cut(s)	480, 858
TscAI	CASTG	1 cut(s)	77
TseFI	GTSAC	1 cut(s)	49
TseI	GCWGC	3 cut(s)	6, 628, 1071
Tsp45I	GTSAC	1 cut(s)	49
TspDTI	ATGAA	2 cut(s)	359, 1130
TspGWI	ACGGA	2 cut(s)	300, 520
TspRI	CASTG	1 cut(s)	77
XapI	RAATTY	2 cut(s)	442, 463
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1028
XhoI	CTCGAG	1 cut(s)	827
XmnI	GAANNNNTTC	2 cut(s)	35, 329

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.