Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3A

Orthogroup ID

OG0006364

Physical Location & Seq

Genomic Coordinates Forward (+)

26747298 .. 26752236

Gene Structure 4939 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3AG249100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 735 bp

ATGTCTAAATATCGCGCGCTCTCAAGCCGTTGGGAGCCATCATTTGGTCGTATGGGTGGATCTGAATACTTCAATAGCATCCATTATGGCACAGGAGATGATCCAGCAACAGACAATGAATTTTTAGGAACGTTTTGCATTGAAAGAAAGATTGATGTAACAAGTTACATCAAGTGGTGGGGGCCTAACAAAACTCGTCAAGCGGACAGCATGATAAAATCATCTGAGGAAGCAAAACATGGTTTTGCTGGAGATAGTGGAGGTGAACTTAAAACATTGGAATGGGAATCCCAGCCTACTGAACCATACCAGATGCCACGTTTGGGCGTCTGCCATGAAGGTAAAAAGCAAAATGGTGCCAGAGTCTCTGCCATGAGCATCTTGTCACGGTCACCTGCTTATAAGAGCTTACAAGAGAAAGCATCAATTAAGCAAGAAAAGAATGCAGATAATGACGAGAATGAAAACAAAAATACGATCCACAAAAAGGACTATGGCAAGGCAATTGAGAAATCCACAAGTCATGATGCTGGGGATGAGAGACTGAATGCTTCATTAGGAATGAGTGGTGGATTGTCCCTCCAGAGGAATGCATTCCCATTGGCTCCGTTCTTGTCTGCGCCACTGCTGACCAACTACAACATGATTGATCCATTAGTAGACCCCATTCTTTGGACATCTCTTGCTCCTGTTCTTCCCGAGGTTGGTATACTTTCTCTTTCAATTCCAAGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

244

Amino Acids

27.03

Weight (kDa)

6.24

Isoelectric Point (pI)

55.33

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006364)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G41710 AT2G41710 AT2G41710 AT2G41710
fragaria_vesca	FvH4_6g24090 FvH4_6g24090 FvH4_6g24090
malus_domestica	MD12G1075200.v1.1 MD12G1079800.v1.1 MD14G1076000.v1.1
prunus_persica	Prupe.7G058300_v2.0.a1
pyrus_communis	pycom12g06470 pycom14g06450
rosa_chinensis	RchiOBHm_Chr3g0482661 RchiOBHm_Chr6g0258101
rosa_laevigata	RLG00000023334
rosa_multiflora	Rmu_co8231061.1_g000001 Rmu_sc0006069.1_g000007 Rmu_sc0011850.1_g000001 Rmu_sc0015893.1_g000013
rosa_roxburghii	Rroxscaffold_1G00037300 Rroxscaffold_6G00399050
rosa_rugosa	Rorug03G0197800
rosa_samantha	Rh3AG249100 Rh3BG284400 Rh3CG282300
rosa_wichuraiana	Rw3G022500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	402
AarI	CACCTGC	1 cut(s)	403
Acc36I	ACCTGC	1 cut(s)	403
AccB1I	GGYRCC	1 cut(s)	356
AccB7I	CCANNNNNTGG	2 cut(s)	44, 672
AccI	GTMKAC	2 cut(s)	660, 709
AccII	CGCG	2 cut(s)	15, 17
AciI	CCGC	1 cut(s)	203
AclI	AACGTT	1 cut(s)	131
AclWI	GGATC	4 cut(s)	67, 95, 472, 644
AcsI	RAATTY	1 cut(s)	119
AcyI	GRCGYC	1 cut(s)	327
AfiI	CCNNNNNNNGG	6 cut(s)	44, 323, 487, 585, 672, 704
AgsI	TTSAA	3 cut(s)	73, 143, 723
AluBI	AGCT	1 cut(s)	408
AluI	AGCT	1 cut(s)	408
Alw26I	GTCTC	2 cut(s)	370, 535
AlwI	GGATC	4 cut(s)	67, 95, 472, 644
Ama87I	CYCGRG	1 cut(s)	698
AoxI	GGCC	1 cut(s)	182
ApoI	RAATTY	1 cut(s)	119
Asp700I	GAANNNNTTC	1 cut(s)	593
AspLEI	GCGC	3 cut(s)	17, 19, 622
AspS9I	GGNCC	1 cut(s)	182
AsuHPI	GGTGA	2 cut(s)	275, 384
AvaI	CYCGRG	1 cut(s)	698
BanI	GGYRCC	1 cut(s)	356
BccI	CCATC	1 cut(s)	46
BceAI	ACGGC	1 cut(s)	12
BcoDI	GTCTC	2 cut(s)	370, 535
BfuAI	ACCTGC	1 cut(s)	403
BmeT110I	CYCGRG	1 cut(s)	698
BmgT120I	GGNCC	1 cut(s)	182
BmiI	GGNNCC	4 cut(s)	36, 183, 358, 606
BmsI	GCATC	5 cut(s)	87, 303, 387, 431, 517
BpmI	CTGGAG	2 cut(s)	270, 566
BpuEI	CTTGAG	1 cut(s)	7
BsaHI	GRCGYC	1 cut(s)	327
BsaJI	CCNNGG	1 cut(s)	699
Bsc4I	CCNNNNNNNGG	6 cut(s)	44, 323, 487, 585, 672, 704
BseDI	CCNNGG	1 cut(s)	699
BseGI	GGATG	2 cut(s)	78, 541
BseLI	CCNNNNNNNGG	6 cut(s)	44, 323, 487, 585, 672, 704
BseMII	CTCAG	1 cut(s)	216
BsePI	GCGCGC	1 cut(s)	15
BseYI	CCCAGC	2 cut(s)	291, 530
Bsh1236I	CGCG	2 cut(s)	15, 17
BshFI	GGCC	1 cut(s)	184
BshNI	GGYRCC	1 cut(s)	356
BsiHKCI	CYCGRG	1 cut(s)	698
BslFI	GGGAC	1 cut(s)	562
BslI	CCNNNNNNNGG	6 cut(s)	44, 323, 487, 585, 672, 704
BsmAI	GTCTC	2 cut(s)	370, 535
BsmFI	GGGAC	1 cut(s)	562
BsmI	GAATGC	4 cut(s)	448, 553, 593, 595
BsnI	GGCC	1 cut(s)	184
BsoBI	CYCGRG	1 cut(s)	698
Bsp143I	GATC	4 cut(s)	59, 100, 477, 649
BspACI	CCGC	1 cut(s)	203
BspANI	GGCC	1 cut(s)	184
BspCNI	CTCAG	1 cut(s)	217
BspFNI	CGCG	2 cut(s)	15, 17
BspHI	TCATGA	1 cut(s)	523
BspLI	GGNNCC	4 cut(s)	36, 183, 358, 606
BspMI	ACCTGC	1 cut(s)	403
BspPI	GGATC	4 cut(s)	67, 95, 472, 644
BspT107I	GGYRCC	1 cut(s)	356
BssECI	CCNNGG	1 cut(s)	699
BssHII	GCGCGC	1 cut(s)	15
BssMI	GATC	4 cut(s)	59, 100, 477, 649
BssNAI	GTATAC	1 cut(s)	710
BssNI	GRCGYC	1 cut(s)	327
Bst1107I	GTATAC	1 cut(s)	710
Bst4CI	ACNGT	1 cut(s)	390
BstACI	GRCGYC	1 cut(s)	327
BstC8I	GCNNGC	1 cut(s)	17
BstDEI	CTNAG	1 cut(s)	225
BstEII	GGTNACC	1 cut(s)	390
BstF5I	GGATG	2 cut(s)	78, 541
BstFNI	CGCG	2 cut(s)	15, 17
BstHHI	GCGC	3 cut(s)	17, 19, 622
BstKTI	GATC	4 cut(s)	62, 103, 480, 652
BstMAI	GTCTC	2 cut(s)	370, 535
BstMBI	GATC	4 cut(s)	59, 100, 477, 649
BstPI	GGTNACC	1 cut(s)	390
BstUI	CGCG	2 cut(s)	15, 17
BstX2I	RGATCY	1 cut(s)	59
BstYI	RGATCY	1 cut(s)	59
BstZ17I	GTATAC	1 cut(s)	710
BsuRI	GGCC	1 cut(s)	184
BtsCI	GGATG	2 cut(s)	78, 541
BtsI	GCAGTG	1 cut(s)	623
BtsIMutI	CAGTG	1 cut(s)	623
BveI	ACCTGC	1 cut(s)	403
Cac8I	GCNNGC	1 cut(s)	17
CciI	TCATGA	1 cut(s)	523
CfoI	GCGC	3 cut(s)	17, 19, 622
Cfr13I	GGNCC	1 cut(s)	182
CseI	GACGC	1 cut(s)	316
CviAII	CATG	6 cut(s)	211, 239, 335, 373, 524, 643
CviJI	RGCY	6 cut(s)	27, 37, 184, 295, 408, 605
CviKI_1	RGCY	6 cut(s)	27, 37, 184, 295, 408, 605
DdeI	CTNAG	1 cut(s)	225
DpnI	GATC	4 cut(s)	61, 102, 479, 651
DpnII	GATC	4 cut(s)	59, 100, 477, 649
Eco88I	CYCGRG	1 cut(s)	698
Eco91I	GGTNACC	1 cut(s)	390
EcoO109I	RGGNCCY	1 cut(s)	182
EcoO65I	GGTNACC	1 cut(s)	390
EcoT22I	ATGCAT	1 cut(s)	595
FaeI	CATG	6 cut(s)	214, 242, 338, 376, 527, 646
FaqI	GGGAC	1 cut(s)	562
FatI	CATG	6 cut(s)	210, 238, 334, 372, 523, 642
FblI	GTMKAC	2 cut(s)	660, 709
FokI	GGATG	2 cut(s)	65, 548
GlaI	GCGC	3 cut(s)	16, 18, 621
GsaI	CCCAGC	2 cut(s)	295, 534
GsuI	CTGGAG	2 cut(s)	270, 566
HaeIII	GGCC	1 cut(s)	184
HgaI	GACGC	1 cut(s)	316
HhaI	GCGC	3 cut(s)	17, 19, 622
Hin1I	GRCGYC	1 cut(s)	327
Hin1II	CATG	6 cut(s)	214, 242, 338, 376, 527, 646
Hin6I	GCGC	3 cut(s)	15, 17, 620
HinP1I	GCGC	3 cut(s)	15, 17, 620
HinfI	GANTC	2 cut(s)	287, 363
HphI	GGTGA	2 cut(s)	275, 384
Hpy166II	GTNNAC	3 cut(s)	266, 661, 710
Hpy188I	TCNGA	2 cut(s)	64, 226
Hpy188III	TCNNGA	3 cut(s)	524, 583, 698
Hpy8I	GTNNAC	3 cut(s)	266, 661, 710
HpyAV	CCTTC	1 cut(s)	332
HpyCH4III	ACNGT	1 cut(s)	390
HpyCH4IV	ACGT	2 cut(s)	131, 319
HpyCH4V	TGCA	3 cut(s)	138, 446, 593
HpyF3I	CTNAG	1 cut(s)	225
HpySE526I	ACGT	2 cut(s)	131, 319
Hsp92I	GRCGYC	1 cut(s)	327
Hsp92II	CATG	6 cut(s)	214, 242, 338, 376, 527, 646
HspAI	GCGC	3 cut(s)	15, 17, 620
Kzo9I	GATC	4 cut(s)	59, 100, 477, 649
LmnI	GCTCC	3 cut(s)	34, 610, 691
LweI	GCATC	5 cut(s)	87, 303, 387, 431, 517
MaeII	ACGT	2 cut(s)	131, 319
MaeIII	GTNAC	4 cut(s)	157, 164, 384, 390
MalI	GATC	4 cut(s)	61, 102, 479, 651
MboI	GATC	4 cut(s)	59, 100, 477, 649
MboII	GAAGA	1 cut(s)	686
MfeI	CAATTG	1 cut(s)	504
MflI	RGATCY	1 cut(s)	59
MluCI	AATT	4 cut(s)	119, 426, 504, 723
MlyI	GAGTC	1 cut(s)	372
MnlI	CCTC	5 cut(s)	220, 254, 579, 590, 694
Mph1103I	ATGCAT	1 cut(s)	595
MroXI	GAANNNNTTC	1 cut(s)	593
MseI	TTAA	2 cut(s)	270, 429
MslI	CAYNNNNRTG	1 cut(s)	280
MunI	CAATTG	1 cut(s)	504
Mva1269I	GAATGC	4 cut(s)	448, 553, 593, 595
MvnI	CGCG	2 cut(s)	15, 17
NdeII	GATC	4 cut(s)	59, 100, 477, 649
NlaIII	CATG	6 cut(s)	214, 242, 338, 376, 527, 646
NlaIV	GGNNCC	4 cut(s)	36, 183, 358, 606
NmuCI	GTSAC	2 cut(s)	384, 390
NsiI	ATGCAT	1 cut(s)	595
PagI	TCATGA	1 cut(s)	523
PaqCI	CACCTGC	1 cut(s)	403
PauI	GCGCGC	1 cut(s)	15
PctI	GAATGC	4 cut(s)	448, 553, 593, 595
PdmI	GAANNNNTTC	1 cut(s)	593
PfeI	GAWTC	1 cut(s)	287
PflMI	CCANNNNNTGG	2 cut(s)	44, 672
PleI	GAGTC	1 cut(s)	371
PpsI	GAGTC	1 cut(s)	371
PsiI	TTATAA	1 cut(s)	402
Psp1406I	AACGTT	1 cut(s)	131
PspEI	GGTNACC	1 cut(s)	390
PspFI	CCCAGC	2 cut(s)	291, 530
PspN4I	GGNNCC	4 cut(s)	36, 183, 358, 606
PspPI	GGNCC	1 cut(s)	182
PsuI	RGATCY	1 cut(s)	59
PteI	GCGCGC	1 cut(s)	15
RseI	CAYNNNNRTG	1 cut(s)	280
SaqAI	TTAA	2 cut(s)	270, 429
Sau3AI	GATC	4 cut(s)	59, 100, 477, 649
Sau96I	GGNCC	1 cut(s)	182
SchI	GAGTC	1 cut(s)	372
SetI	ASST	7 cut(s)	134, 265, 322, 343, 397, 410, 705
SfaNI	GCATC	5 cut(s)	87, 303, 387, 431, 517
SmiMI	CAYNNNNRTG	1 cut(s)	280
SmlI	CTYRAG	1 cut(s)	22
SmoI	CTYRAG	1 cut(s)	22
Sse9I	AATT	4 cut(s)	119, 426, 504, 723
SsiI	CCGC	1 cut(s)	203
TaaI	ACNGT	1 cut(s)	390
TaiI	ACGT	2 cut(s)	134, 322
TasI	AATT	4 cut(s)	119, 426, 504, 723
TfiI	GAWTC	1 cut(s)	287
Tru1I	TTAA	2 cut(s)	270, 429
Tru9I	TTAA	2 cut(s)	270, 429
TscAI	CASTG	1 cut(s)	630
TseFI	GTSAC	2 cut(s)	384, 390
Tsp45I	GTSAC	2 cut(s)	384, 390
TspDTI	ATGAA	4 cut(s)	132, 351, 477, 543
TspGWI	ACGGA	1 cut(s)	597
TspRI	CASTG	1 cut(s)	630
Van91I	CCANNNNNTGG	2 cut(s)	44, 672
XapI	RAATTY	1 cut(s)	119
XmiI	GTMKAC	2 cut(s)	660, 709
XmnI	GAANNNNTTC	1 cut(s)	593
Zsp2I	ATGCAT	1 cut(s)	595

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.