RchiOBHm_Chr3g0482661

AP2-like ethylene-responsive transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
OG0006364
Physical Location & Seq
Forward (+)
28699583 .. 28704123
4541 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ44750

Sequence Viewer

Length: 1278 bp
ATGGCTTCGTCGTCCTCGGATCCTGGTCCGAAGACCGAAAGCGGAAGCGGCAGCGGCGGCGGAGCGGAGGCCTCGGAAGCAGCGGCGGCGGCTGCGGCGGCGGTGGCGACCGATCAGCAATTGCTTTACAGAGGGCTGAAGAAAGCGAAGAAAGAGAGAGGTTGCACGGCCAAAGAGCGCATCAGCAAAATGCCTCCCTGTGCCGCTGGAAAACGCAGCTCCATTTACCGCGGAGTCACTCGGCATAGGTGGACGGGTCGTTACGAAGCTCATCTATGGGATAAAAGTACCTGGAACCAGAACCAGAATAAGAAGGGAAAGCAAGTTTACTTGGGCGCGTATGATGATGAAGAGGCTGCAGCCAGAGCTTATGATCTTGCTGCCTTGAAATATTGGGGCCCTGGCACTCTGATTAATTTCCCTGTTACTGACTACACAAGAGATCTCGAAGAGATGCAGAATGTGTCAAGGGAGGAATATCTTGCATCTCTTCGCAGGAAGAGCAGCGGCTTCTCTAGAGGAATGTCTAAATATCGCGCGCTCTCAAGCCGTTGGGAGCCATCATTTGGTCGTATGGGTGGATCTGAATACTTCAATAGCATCCATTATGGCACAGGAGATGATCCAGCAACAGACAATGAATTTTTAGGAACGTTTTGCATTGAAAGAAAGATTGATGTAACAAGTTACATCAAGTGGTGGGGGCCTAACAAAACTCGTCAAGCGGACAGCATGATAAAATCATCTGAGGAAGCAAAACATGGTTTTGCTGGAGATAGTGGAGGTGAACTTAAAACATTGGAATGGGAATCCCAGCCTACTGAACCATACCAGATGCCACGTTTGGGCGTCTGCCATGAAGGTAAAAAGCAAAATGGTGCCAGAGTCTCTGCCATGAGCATCTTGTCACGGTCACCTGCTTATAAGAGCTTACAAGAGAAAGCATCAATTAAGCAAGAAAAGAATGCAGATAATGACGAGAATGAAAACAAAAATACGATCCACAAAAAGGACTATGGCAAGGCAATTGAGAAATCCACAAGTCATGATGCTGGGGATGAGAGACTGAATGCTTCATTAGGAATGAGTGGTGGATTGTCCCTCCAGAGGAATGCATTCCCATTGGCTCCGTTCTTGTCTGCGCCACTGCTGACCAACTACAACATGATTGATCCATTAGTAGACCCCATTCTTTGGACATCTCTTGCTCCTGTTCTTCCCGAGGTTACAAAGACTGAGACCAGTGCAAGTTACAGTTTATTTCGGCCTGAGGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
AP2

Protein Analysis

425

Amino Acids

46.89

Weight (kDa)

8.59

Isoelectric Point (pI)

51.3

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AP2 PF00847 76 - 133 2.7e-12 AP2 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 924
AarI CACCTGC 1 cut(s) 925
Acc36I ACCTGC 1 cut(s) 925
AccB1I GGYRCC 1 cut(s) 878
AccB7I CCANNNNNTGG 2 cut(s) 566, 1194
AccBSI CCGCTC 1 cut(s) 65
AccI GTMKAC 1 cut(s) 1182
AccII CGCG 4 cut(s) 231, 338, 537, 539
AclI AACGTT 1 cut(s) 653
AclWI GGATC 6 cut(s) 14, 27, 589, 617, 994, 1166
AcoI YGGCCR 1 cut(s) 168
AcsI RAATTY 1 cut(s) 641
AcuI CTGAAG 1 cut(s) 158
AcyI GRCGYC 1 cut(s) 849
AfaI GTAC 1 cut(s) 289
AfiI CCNNNNNNNGG 5 cut(s) 566, 845, 1009, 1107, 1194
AgsI TTSAA 3 cut(s) 388, 595, 665
AjnI CCWGG 3 cut(s) 22, 290, 400
AluBI AGCT 4 cut(s) 219, 269, 368, 930
AluI AGCT 4 cut(s) 219, 269, 368, 930
Alw26I GTCTC 3 cut(s) 892, 1057, 1232
AlwI GGATC 6 cut(s) 14, 27, 589, 617, 994, 1166
Ama87I CYCGRG 1 cut(s) 1220
AoxI GGCC 5 cut(s) 69, 168, 397, 704, 1265
ApaI GGGCCC 1 cut(s) 401
ApeKI GCWGC 8 cut(s) 51, 80, 92, 216, 356, 359, 380, 504
ApoI RAATTY 1 cut(s) 641
AseI ATTAAT 1 cut(s) 414
Asp700I GAANNNNTTC 1 cut(s) 1115
AspLEI GCGC 5 cut(s) 180, 338, 539, 541, 1144
AspS9I GGNCC 4 cut(s) 26, 397, 398, 704
AsuHPI GGTGA 2 cut(s) 797, 906
AvaI CYCGRG 1 cut(s) 1220
AvaII GGWCC 1 cut(s) 26
AxyI CCTNAGG 1 cut(s) 1269
BaeGI GKGCMC 1 cut(s) 401
BamHI GGATCC 1 cut(s) 19
BanI GGYRCC 1 cut(s) 878
BanII GRGCYC 1 cut(s) 401
BbsI GAAGAC 1 cut(s) 38
BbvI GCAGC 8 cut(s) 63, 79, 92, 228, 343, 367, 371, 516
BccI CCATC 1 cut(s) 568
BceAI ACGGC 2 cut(s) 183, 534
BciT130I CCWGG 3 cut(s) 24, 292, 402
BcoDI GTCTC 3 cut(s) 892, 1057, 1232
BfaI CTAG 1 cut(s) 516
BfmI CTRYAG 1 cut(s) 357
BfuAI ACCTGC 1 cut(s) 925
BglII AGATCT 1 cut(s) 442
Bme1390I CCNGG 3 cut(s) 24, 292, 402
Bme18I GGWCC 1 cut(s) 26
BmeT110I CYCGRG 1 cut(s) 1220
BmgT120I GGNCC 4 cut(s) 26, 397, 398, 704
BmiI GGNNCC 8 cut(s) 21, 296, 398, 399, 558, 705, 880, 1128
BmrFI CCNGG 3 cut(s) 24, 292, 402
BmsI GCATC 8 cut(s) 189, 444, 494, 609, 825, 909, 953, 1039
BpiI GAAGAC 1 cut(s) 38
BpmI CTGGAG 2 cut(s) 792, 1088
BpuEI CTTGAG 1 cut(s) 529
BsaHI GRCGYC 1 cut(s) 849
BsaI GGTCTC 1 cut(s) 1232
BsaJI CCNNGG 5 cut(s) 15, 72, 229, 400, 1221
Bsc4I CCNNNNNNNGG 5 cut(s) 566, 845, 1009, 1107, 1194
Bse1I ACTGG 1 cut(s) 1242
Bse21I CCTNAGG 1 cut(s) 1269
BseBI CCWGG 3 cut(s) 24, 292, 402
BseDI CCNNGG 5 cut(s) 15, 72, 229, 400, 1221
BseGI GGATG 2 cut(s) 600, 1063
BseLI CCNNNNNNNGG 5 cut(s) 566, 845, 1009, 1107, 1194
BseMII CTCAG 3 cut(s) 738, 1227, 1260
BseNI ACTGG 1 cut(s) 1242
BsePI GCGCGC 1 cut(s) 537
BseSI GKGCMC 1 cut(s) 401
BseXI GCAGC 8 cut(s) 63, 79, 92, 228, 343, 367, 371, 516
BseYI CCCAGC 2 cut(s) 813, 1052
Bsh1236I CGCG 4 cut(s) 231, 338, 537, 539
Bsh1285I CGRYCG 1 cut(s) 111
BshFI GGCC 5 cut(s) 71, 170, 399, 706, 1267
BshNI GGYRCC 1 cut(s) 878
BsiEI CGRYCG 1 cut(s) 111
BsiHKCI CYCGRG 1 cut(s) 1220
BslFI GGGAC 1 cut(s) 1084
BslI CCNNNNNNNGG 5 cut(s) 566, 845, 1009, 1107, 1194
BsmAI GTCTC 3 cut(s) 892, 1057, 1232
BsmFI GGGAC 1 cut(s) 1084
BsmI GAATGC 4 cut(s) 970, 1075, 1115, 1117
BsnI GGCC 5 cut(s) 71, 170, 399, 706, 1267
Bso31I GGTCTC 1 cut(s) 1232
BsoBI CYCGRG 1 cut(s) 1220
Bsp120I GGGCCC 1 cut(s) 397
Bsp1286I GDGCHC 1 cut(s) 401
Bsp143I GATC 8 cut(s) 19, 112, 373, 442, 581, 622, 999, 1171
BspANI GGCC 5 cut(s) 71, 170, 399, 706, 1267
BspCNI CTCAG 3 cut(s) 739, 1228, 1261
BspFNI CGCG 4 cut(s) 231, 338, 537, 539
BspHI TCATGA 1 cut(s) 1045
BspLI GGNNCC 8 cut(s) 21, 296, 398, 399, 558, 705, 880, 1128
BspMAI CTGCAG 1 cut(s) 361
BspMI ACCTGC 1 cut(s) 925
BspPI GGATC 6 cut(s) 14, 27, 589, 617, 994, 1166
BspQI GCTCTTC 1 cut(s) 494
BspT107I GGYRCC 1 cut(s) 878
BspTNI GGTCTC 1 cut(s) 1232
BsrBI CCGCTC 1 cut(s) 65
BsrI ACTGG 1 cut(s) 1242
BssECI CCNNGG 5 cut(s) 15, 72, 229, 400, 1221
BssHII GCGCGC 1 cut(s) 537
BssMI GATC 8 cut(s) 19, 112, 373, 442, 581, 622, 999, 1171
BssNI GRCGYC 1 cut(s) 849
Bst2UI CCWGG 3 cut(s) 24, 292, 402
Bst4CI ACNGT 2 cut(s) 912, 1256
Bst6I CTCTTC 4 cut(s) 345, 444, 494, 495
BstACI GRCGYC 1 cut(s) 849
BstC8I GCNNGC 1 cut(s) 539
BstDEI CTNAG 3 cut(s) 747, 1236, 1269
BstDSI CCRYGG 1 cut(s) 229
BstEII GGTNACC 1 cut(s) 912
BstF5I GGATG 2 cut(s) 600, 1063
BstFNI CGCG 4 cut(s) 231, 338, 537, 539
BstHHI GCGC 5 cut(s) 180, 338, 539, 541, 1144
BstKTI GATC 8 cut(s) 22, 115, 376, 445, 584, 625, 1002, 1174
BstMAI GTCTC 3 cut(s) 892, 1057, 1232
BstMBI GATC 8 cut(s) 19, 112, 373, 442, 581, 622, 999, 1171
BstMCI CGRYCG 1 cut(s) 111
BstNI CCWGG 3 cut(s) 24, 292, 402
BstPI GGTNACC 1 cut(s) 912
BstSCI CCNGG 3 cut(s) 22, 290, 400
BstSFI CTRYAG 1 cut(s) 357
BstSLI GKGCMC 1 cut(s) 401
BstUI CGCG 4 cut(s) 231, 338, 537, 539
BstV1I GCAGC 8 cut(s) 63, 79, 92, 228, 343, 367, 371, 516
BstV2I GAAGAC 1 cut(s) 38
BstX2I RGATCY 3 cut(s) 19, 442, 581
BstYI RGATCY 3 cut(s) 19, 442, 581
Bsu36I CCTNAGG 1 cut(s) 1269
BsuRI GGCC 5 cut(s) 71, 170, 399, 706, 1267
BtgI CCRYGG 1 cut(s) 229
BtsCI GGATG 2 cut(s) 600, 1063
BtsI GCAGTG 1 cut(s) 1145
BtsIMutI CAGTG 2 cut(s) 1145, 1249
BveI ACCTGC 1 cut(s) 925
Cac8I GCNNGC 1 cut(s) 539
CciI TCATGA 1 cut(s) 1045
CfoI GCGC 5 cut(s) 180, 338, 539, 541, 1144
Cfr13I GGNCC 4 cut(s) 26, 397, 398, 704
Cfr42I CCGCGG 1 cut(s) 232
CseI GACGC 1 cut(s) 838
Csp6I GTAC 1 cut(s) 288
CviAII CATG 6 cut(s) 733, 761, 857, 895, 1046, 1165
CviQI GTAC 1 cut(s) 288
DdeI CTNAG 3 cut(s) 747, 1236, 1269
DpnI GATC 8 cut(s) 21, 114, 375, 444, 583, 624, 1001, 1173
DpnII GATC 8 cut(s) 19, 112, 373, 442, 581, 622, 999, 1171
EaeI YGGCCR 1 cut(s) 168
Eam1104I CTCTTC 4 cut(s) 345, 444, 494, 495
EarI CTCTTC 4 cut(s) 345, 444, 494, 495
EciI GGCGGA 1 cut(s) 75
Eco147I AGGCCT 1 cut(s) 71
Eco24I GRGCYC 1 cut(s) 401
Eco31I GGTCTC 1 cut(s) 1232
Eco47I GGWCC 1 cut(s) 26
Eco57I CTGAAG 1 cut(s) 158
Eco81I CCTNAGG 1 cut(s) 1269
Eco88I CYCGRG 1 cut(s) 1220
Eco91I GGTNACC 1 cut(s) 912
EcoO109I RGGNCCY 3 cut(s) 397, 398, 704
EcoO65I GGTNACC 1 cut(s) 912
EcoRII CCWGG 3 cut(s) 22, 290, 400
EcoT22I ATGCAT 1 cut(s) 1117
EcoT38I GRGCYC 1 cut(s) 401
FaeI CATG 6 cut(s) 736, 764, 860, 898, 1049, 1168
FaqI GGGAC 1 cut(s) 1084
FatI CATG 6 cut(s) 732, 760, 856, 894, 1045, 1164
FblI GTMKAC 1 cut(s) 1182
FokI GGATG 2 cut(s) 587, 1070
FriOI GRGCYC 1 cut(s) 401
FspBI CTAG 1 cut(s) 516
GlaI GCGC 5 cut(s) 179, 337, 538, 540, 1143
GsaI CCCAGC 2 cut(s) 817, 1056
GsuI CTGGAG 2 cut(s) 792, 1088
HaeIII GGCC 5 cut(s) 71, 170, 399, 706, 1267
HgaI GACGC 1 cut(s) 838
HhaI GCGC 5 cut(s) 180, 338, 539, 541, 1144
Hin1I GRCGYC 1 cut(s) 849
Hin1II CATG 6 cut(s) 736, 764, 860, 898, 1049, 1168
Hin6I GCGC 5 cut(s) 178, 336, 537, 539, 1142
HinP1I GCGC 5 cut(s) 178, 336, 537, 539, 1142
HinfI GANTC 3 cut(s) 234, 809, 885
HphI GGTGA 2 cut(s) 797, 906
Hpy166II GTNNAC 4 cut(s) 252, 328, 788, 1183
Hpy188I TCNGA 6 cut(s) 19, 30, 76, 411, 586, 748
Hpy188III TCNNGA 5 cut(s) 446, 516, 1046, 1105, 1220
Hpy8I GTNNAC 4 cut(s) 252, 328, 788, 1183
Hpy99I CGWCG 1 cut(s) 13
HpyAV CCTTC 2 cut(s) 307, 854
HpyCH4III ACNGT 2 cut(s) 912, 1256
HpyCH4IV ACGT 2 cut(s) 653, 841
HpyCH4V TGCA 8 cut(s) 165, 359, 457, 485, 660, 968, 1115, 1247
HpyF3I CTNAG 3 cut(s) 747, 1236, 1269
HpySE526I ACGT 2 cut(s) 653, 841
Hsp92I GRCGYC 1 cut(s) 849
Hsp92II CATG 6 cut(s) 736, 764, 860, 898, 1049, 1168
HspAI GCGC 5 cut(s) 178, 336, 537, 539, 1142
KspI CCGCGG 1 cut(s) 232
Kzo9I GATC 8 cut(s) 19, 112, 373, 442, 581, 622, 999, 1171
LguI GCTCTTC 1 cut(s) 494
LmnI GCTCC 5 cut(s) 62, 224, 556, 1132, 1213
Lsp1109I GCAGC 8 cut(s) 63, 79, 92, 228, 343, 367, 371, 516
LweI GCATC 8 cut(s) 189, 444, 494, 609, 825, 909, 953, 1039
MaeI CTAG 1 cut(s) 516
MaeII ACGT 2 cut(s) 653, 841
MaeIII GTNAC 9 cut(s) 235, 260, 424, 679, 686, 906, 912, 1225, 1250
MalI GATC 8 cut(s) 21, 114, 375, 444, 583, 624, 1001, 1173
MbiI CCGCTC 1 cut(s) 65
MboI GATC 8 cut(s) 19, 112, 373, 442, 581, 622, 999, 1171
MboII GAAGA 8 cut(s) 43, 151, 160, 362, 461, 482, 511, 1208
MfeI CAATTG 2 cut(s) 119, 1026
MflI RGATCY 3 cut(s) 19, 442, 581
MhlI GDGCHC 1 cut(s) 401
MluCI AATT 5 cut(s) 119, 415, 641, 948, 1026
MlyI GAGTC 2 cut(s) 243, 894
Mph1103I ATGCAT 1 cut(s) 1117
MroXI GAANNNNTTC 1 cut(s) 1115
MseI TTAA 3 cut(s) 414, 792, 951
MslI CAYNNNNRTG 1 cut(s) 802
MspA1I CMGCKG 5 cut(s) 54, 83, 206, 231, 507
MspR9I CCNGG 3 cut(s) 24, 292, 402
MunI CAATTG 2 cut(s) 119, 1026
Mva1269I GAATGC 4 cut(s) 970, 1075, 1115, 1117
MvaI CCWGG 3 cut(s) 24, 292, 402
MvnI CGCG 4 cut(s) 231, 338, 537, 539
NdeII GATC 8 cut(s) 19, 112, 373, 442, 581, 622, 999, 1171
NlaIII CATG 6 cut(s) 736, 764, 860, 898, 1049, 1168
NlaIV GGNNCC 8 cut(s) 21, 296, 398, 399, 558, 705, 880, 1128
NmeAIII GCCGAG 1 cut(s) 220
NmuCI GTSAC 3 cut(s) 235, 906, 912
NsiI ATGCAT 1 cut(s) 1117
PagI TCATGA 1 cut(s) 1045
PaqCI CACCTGC 1 cut(s) 925
PauI GCGCGC 1 cut(s) 537
PceI AGGCCT 1 cut(s) 71
PciSI GCTCTTC 1 cut(s) 494
PctI GAATGC 4 cut(s) 970, 1075, 1115, 1117
PdmI GAANNNNTTC 1 cut(s) 1115
PfeI GAWTC 1 cut(s) 809
PflMI CCANNNNNTGG 2 cut(s) 566, 1194
PleI GAGTC 2 cut(s) 242, 893
PpsI GAGTC 2 cut(s) 242, 893
PshBI ATTAAT 1 cut(s) 414
PsiI TTATAA 1 cut(s) 924
Psp1406I AACGTT 1 cut(s) 653
Psp6I CCWGG 3 cut(s) 22, 290, 400
PspEI GGTNACC 1 cut(s) 912
PspFI CCCAGC 2 cut(s) 813, 1052
PspGI CCWGG 3 cut(s) 22, 290, 400
PspN4I GGNNCC 8 cut(s) 21, 296, 398, 399, 558, 705, 880, 1128
PspOMI GGGCCC 1 cut(s) 397
PspPI GGNCC 4 cut(s) 26, 397, 398, 704
PstI CTGCAG 1 cut(s) 361
PsuI RGATCY 3 cut(s) 19, 442, 581
PteI GCGCGC 1 cut(s) 537
RsaI GTAC 1 cut(s) 289
RsaNI GTAC 1 cut(s) 288
RseI CAYNNNNRTG 1 cut(s) 802
SacII CCGCGG 1 cut(s) 232
SapI GCTCTTC 1 cut(s) 494
SaqAI TTAA 3 cut(s) 414, 792, 951
Sau3AI GATC 8 cut(s) 19, 112, 373, 442, 581, 622, 999, 1171
Sau96I GGNCC 4 cut(s) 26, 397, 398, 704
SchI GAGTC 2 cut(s) 243, 894
ScrFI CCNGG 3 cut(s) 24, 292, 402
SduI GDGCHC 1 cut(s) 401
SfaNI GCATC 8 cut(s) 189, 444, 494, 609, 825, 909, 953, 1039
SfcI CTRYAG 1 cut(s) 357
Sfr303I CCGCGG 1 cut(s) 232
SgrBI CCGCGG 1 cut(s) 232
SinI GGWCC 1 cut(s) 26
SmiMI CAYNNNNRTG 1 cut(s) 802
SmlI CTYRAG 1 cut(s) 544
SmoI CTYRAG 1 cut(s) 544
Sse9I AATT 5 cut(s) 119, 415, 641, 948, 1026
SseBI AGGCCT 1 cut(s) 71
SspI AATATT 1 cut(s) 392
SspMI CTAG 1 cut(s) 516
StuI AGGCCT 1 cut(s) 71
StyD4I CCNGG 3 cut(s) 22, 290, 400
TaaI ACNGT 2 cut(s) 912, 1256
TaiI ACGT 2 cut(s) 656, 844
TaqI TCGA 1 cut(s) 447
TaqII GACCGA 2 cut(s) 50, 125
TasI AATT 5 cut(s) 119, 415, 641, 948, 1026
TfiI GAWTC 1 cut(s) 809
Tru1I TTAA 3 cut(s) 414, 792, 951
Tru9I TTAA 3 cut(s) 414, 792, 951
TscAI CASTG 2 cut(s) 1152, 1249
TseFI GTSAC 3 cut(s) 235, 906, 912
TseI GCWGC 8 cut(s) 51, 80, 92, 216, 356, 359, 380, 504
Tsp45I GTSAC 3 cut(s) 235, 906, 912
TspDTI ATGAA 5 cut(s) 363, 654, 873, 999, 1065
TspGWI ACGGA 1 cut(s) 1119
TspRI CASTG 2 cut(s) 1152, 1249
Van91I CCANNNNNTGG 2 cut(s) 566, 1194
VpaK11BI GGWCC 1 cut(s) 26
VspI ATTAAT 1 cut(s) 414
XapI RAATTY 1 cut(s) 641
XbaI TCTAGA 1 cut(s) 515
XmiI GTMKAC 1 cut(s) 1182
XmnI GAANNNNTTC 1 cut(s) 1115
XspI CTAG 1 cut(s) 516
Zsp2I ATGCAT 1 cut(s) 1117
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.