Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp07

Orthogroup ID

OG0006364

Physical Location & Seq

Genomic Coordinates Reverse (-)

9769463 .. 9773619

Gene Structure 4157 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.7G058300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1278 bp

ATGGCGTCGTCGTCCTCCGATCCCGGTCCAAAGACCGAAAGCGGCGGCGGCGGCGGTGCCGGAGCAGAGGCGTCAGAGGCGGTGACGGCCAGCGATCAGCTATTGCTGTACAGAGGGCTCAAGAAAGCGAAGAAAGAGAGAGGCTGTACGGCCAAAGAGCGCATCAGCAAAATGCCTCCTTGTGCTGCTGGAAAACGCAGCTCCATTTACCGTGGAGTCACTCGGCATAGGTGGACAGGTCGTTATGAAGCTCATCTTTGGGACAAAAGTACATGGAACCAGAACCAGAATAAGAAGGGAAAGCAAGTTTACTTGGGGGCGTATGACGATGAAGAGGCTGCAGCTAGAGCTTATGATCTTGCTGCCTTGAAATACTGGGGCCCTGGCACACTCATTAATTTTCCTGTTACAGATTACACAAGGGATCTTGAAGAGATGCAGAATATGTCAAGGGAGGAATACCTTGCATCTCTTAGAAGGAAGAGCAGTGGTTTCTCGAGAGGAATTTCTAAATATCGTGGGCTTTCCAGTCGTTGGGAACCATCATTGGGTCGTATGGGTGGATCAGAGTACTTCAATAGCATACATTATGGTACAGGCGATGATCCAGCCACAGAAAGTGAATTTTTGGGAGCTTTTTGCATTGAAAGAAAGTTTGATTTAACAAGTTACATCAAGTGGTGGGGAACCAACAAATCTCGTCAAGCTGACACTAGCACAAAATCATCAGAAGAAACAAAACATGGTTTTGTTGGAGACATTGGAGTTGAACTTAAAACATTGGAATGGGAAATCCAGCCTACTGAACCATACCAGATTCCCCGTTTGGGCATTTCCCGTGTAAGTAAAAAGCATAAAGGTGCCAGAGTCTCTGCCATGAGCATCTTGTCACGGTCAGCTGCCTATAAGAACTTGCAAGAGAACGCATCAAAAAAGCAAGAAAACAATGCAGATAATGATGAGAATGAAAACAAAAATACCATCCACAAGATGGACTACGGCAAGGCAGTTGAGAAATCCACAAGTCATGATGAGAGACTTAGTGCTGCATTAGGAATGAGTAGTGGATTGTCTCTCCAAGTCCAAAGAAATGCGTTCCCATTGACTCCGTTCTTGTCTGCGCCACTTATGACCAACTACAATACCATTGATCCCTTAGTAGATCCCATTCTTTGGACATCTCTTGCTCCTGTTCTTCCCTCTGGAATTTCTCGTACTGCTGAGATTACAAAGACTGAGACAAGTTCAACTTTCACTTTATTTCGGCCCGAAGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

426

Amino Acids

47.2

Weight (kDa)

9.0

Isoelectric Point (pI)

48.61

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006364)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G41710 AT2G41710 AT2G41710 AT2G41710
fragaria_vesca	FvH4_6g24090 FvH4_6g24090 FvH4_6g24090
malus_domestica	MD12G1075200.v1.1 MD12G1079800.v1.1 MD14G1076000.v1.1
prunus_persica	Prupe.7G058300_v2.0.a1
pyrus_communis	pycom12g06470 pycom14g06450
rosa_chinensis	RchiOBHm_Chr3g0482661 RchiOBHm_Chr6g0258101
rosa_laevigata	RLG00000023334
rosa_multiflora	Rmu_co8231061.1_g000001 Rmu_sc0006069.1_g000007 Rmu_sc0011850.1_g000001 Rmu_sc0015893.1_g000013
rosa_roxburghii	Rroxscaffold_1G00037300 Rroxscaffold_6G00399050
rosa_rugosa	Rorug03G0197800
rosa_samantha	Rh3AG249100 Rh3BG284400 Rh3CG282300
rosa_wichuraiana	Rw3G022500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	56, 860
AccB7I	CCANNNNNTGG	3 cut(s)	534, 991, 1173
AciI	CCGC	6 cut(s)	42, 45, 48, 51, 54, 80
AclWI	GGATC	6 cut(s)	14, 432, 571, 599, 1145, 1157
AcoI	YGGCCR	2 cut(s)	87, 150
AcsI	RAATTY	3 cut(s)	504, 623, 1206
AcyI	GRCGYC	2 cut(s)	5, 71
AfaI	GTAC	6 cut(s)	110, 148, 271, 572, 595, 1216
AfiI	CCNNNNNNNGG	5 cut(s)	534, 548, 827, 991, 1173
AgsI	TTSAA	6 cut(s)	370, 431, 577, 647, 770, 1248
AjnI	CCWGG	1 cut(s)	382
AluBI	AGCT	8 cut(s)	100, 201, 251, 344, 350, 635, 707, 899
AluI	AGCT	8 cut(s)	100, 201, 251, 344, 350, 635, 707, 899
Alw26I	GTCTC	5 cut(s)	750, 874, 1030, 1077, 1232
AlwI	GGATC	6 cut(s)	14, 432, 571, 599, 1145, 1157
Ama87I	CYCGRG	1 cut(s)	496
AoxI	GGCC	4 cut(s)	87, 150, 379, 1265
ApaI	GGGCCC	1 cut(s)	383
ApeKI	GCWGC	7 cut(s)	185, 198, 338, 341, 362, 899, 1046
ApoI	RAATTY	3 cut(s)	504, 623, 1206
AseI	ATTAAT	1 cut(s)	396
AspLEI	GCGC	2 cut(s)	162, 1123
AspS9I	GGNCC	4 cut(s)	26, 379, 380, 1266
AsuC2I	CCSGG	1 cut(s)	24
AsuHPI	GGTGA	1 cut(s)	94
AvaI	CYCGRG	1 cut(s)	496
AvaII	GGWCC	1 cut(s)	26
BaeGI	GKGCMC	1 cut(s)	383
BanI	GGYRCC	2 cut(s)	56, 860
BanII	GRGCYC	2 cut(s)	120, 383
BbvI	GCAGC	7 cut(s)	172, 210, 325, 349, 353, 886, 1033
BccI	CCATC	3 cut(s)	550, 985, 989
BceAI	ACGGC	3 cut(s)	102, 165, 1015
BciT130I	CCWGG	1 cut(s)	384
BcnI	CCSGG	1 cut(s)	24
BcoDI	GTCTC	5 cut(s)	750, 874, 1030, 1077, 1232
BfaI	CTAG	2 cut(s)	345, 714
BfmI	CTRYAG	1 cut(s)	339
BmcAI	AGTACT	1 cut(s)	572
Bme1390I	CCNGG	2 cut(s)	24, 384
Bme18I	GGWCC	1 cut(s)	26
BmeT110I	CYCGRG	1 cut(s)	496
BmgT120I	GGNCC	4 cut(s)	26, 379, 380, 1266
BmiI	GGNNCC	7 cut(s)	58, 278, 380, 381, 540, 688, 862
BmrFI	CCNGG	2 cut(s)	24, 384
BmrI	ACTGGG	1 cut(s)	385
BmsI	GCATC	5 cut(s)	171, 426, 476, 891, 935
BmuI	ACTGGG	1 cut(s)	385
BpuEI	CTTGAG	1 cut(s)	104
BpuMI	CCSGG	1 cut(s)	24
BsaHI	GRCGYC	2 cut(s)	5, 71
BsaJI	CCNNGG	2 cut(s)	211, 382
Bsc4I	CCNNNNNNNGG	5 cut(s)	534, 548, 827, 991, 1173
Bse1I	ACTGG	2 cut(s)	380, 528
BseBI	CCWGG	1 cut(s)	384
BseDI	CCNNGG	2 cut(s)	211, 382
BseGI	GGATG	1 cut(s)	981
BseLI	CCNNNNNNNGG	5 cut(s)	534, 548, 827, 991, 1173
BseMII	CTCAG	2 cut(s)	1212, 1227
BseNI	ACTGG	2 cut(s)	380, 528
BseSI	GKGCMC	1 cut(s)	383
BseXI	GCAGC	7 cut(s)	172, 210, 325, 349, 353, 886, 1033
BshFI	GGCC	4 cut(s)	89, 152, 381, 1267
BshNI	GGYRCC	2 cut(s)	56, 860
BsiHKCI	CYCGRG	1 cut(s)	496
BsiSI	CCGG	2 cut(s)	24, 60
BslFI	GGGAC	1 cut(s)	275
BslI	CCNNNNNNNGG	5 cut(s)	534, 548, 827, 991, 1173
BsmAI	GTCTC	5 cut(s)	750, 874, 1030, 1077, 1232
BsmFI	GGGAC	1 cut(s)	275
BsnI	GGCC	4 cut(s)	89, 152, 381, 1267
BsoBI	CYCGRG	1 cut(s)	496
Bsp120I	GGGCCC	1 cut(s)	379
Bsp1286I	GDGCHC	2 cut(s)	120, 383
Bsp1407I	TGTACA	1 cut(s)	108
Bsp143I	GATC	8 cut(s)	19, 94, 355, 424, 563, 604, 1150, 1162
BspACI	CCGC	6 cut(s)	42, 45, 48, 51, 54, 80
BspANI	GGCC	4 cut(s)	89, 152, 381, 1267
BspCNI	CTCAG	2 cut(s)	1213, 1228
BspHI	TCATGA	1 cut(s)	1027
BspLI	GGNNCC	7 cut(s)	58, 278, 380, 381, 540, 688, 862
BspMAI	CTGCAG	1 cut(s)	343
BspPI	GGATC	6 cut(s)	14, 432, 571, 599, 1145, 1157
BspQI	GCTCTTC	1 cut(s)	476
BspT107I	GGYRCC	2 cut(s)	56, 860
BsrGI	TGTACA	1 cut(s)	108
BsrI	ACTGG	2 cut(s)	380, 528
BssECI	CCNNGG	2 cut(s)	211, 382
BssMI	GATC	8 cut(s)	19, 94, 355, 424, 563, 604, 1150, 1162
BssNI	GRCGYC	2 cut(s)	5, 71
Bst2UI	CCWGG	1 cut(s)	384
Bst4CI	ACNGT	2 cut(s)	212, 894
Bst6I	CTCTTC	3 cut(s)	327, 426, 476
BstACI	GRCGYC	2 cut(s)	5, 71
BstAUI	TGTACA	1 cut(s)	108
BstC8I	GCNNGC	1 cut(s)	91
BstDEI	CTNAG	5 cut(s)	473, 1040, 1156, 1221, 1236
BstDSI	CCRYGG	1 cut(s)	211
BstF5I	GGATG	1 cut(s)	981
BstHHI	GCGC	2 cut(s)	162, 1123
BstKTI	GATC	8 cut(s)	22, 97, 358, 427, 566, 607, 1153, 1165
BstMAI	GTCTC	5 cut(s)	750, 874, 1030, 1077, 1232
BstMBI	GATC	8 cut(s)	19, 94, 355, 424, 563, 604, 1150, 1162
BstMWI	GCNNNNNNNGC	5 cut(s)	48, 51, 77, 86, 347
BstNI	CCWGG	1 cut(s)	384
BstSCI	CCNGG	2 cut(s)	22, 382
BstSFI	CTRYAG	1 cut(s)	339
BstSLI	GKGCMC	1 cut(s)	383
BstV1I	GCAGC	7 cut(s)	172, 210, 325, 349, 353, 886, 1033
BstX2I	RGATCY	2 cut(s)	424, 1162
BstYI	RGATCY	2 cut(s)	424, 1162
BsuRI	GGCC	4 cut(s)	89, 152, 381, 1267
BtgI	CCRYGG	1 cut(s)	211
BtgZI	GCGATG	1 cut(s)	615
BtsCI	GGATG	1 cut(s)	981
BtsI	GCAGTG	1 cut(s)	493
BtsIMutI	CAGTG	1 cut(s)	493
Cac8I	GCNNGC	1 cut(s)	91
CciI	TCATGA	1 cut(s)	1027
CfoI	GCGC	2 cut(s)	162, 1123
Cfr13I	GGNCC	4 cut(s)	26, 379, 380, 1266
CseI	GACGC	1 cut(s)	60
Csp6I	GTAC	6 cut(s)	109, 147, 270, 571, 594, 1215
CviAII	CATG	4 cut(s)	273, 743, 877, 1028
CviQI	GTAC	6 cut(s)	109, 147, 270, 571, 594, 1215
DdeI	CTNAG	5 cut(s)	473, 1040, 1156, 1221, 1236
DpnI	GATC	8 cut(s)	21, 96, 357, 426, 565, 606, 1152, 1164
DpnII	GATC	8 cut(s)	19, 94, 355, 424, 563, 604, 1150, 1162
EaeI	YGGCCR	2 cut(s)	87, 150
Eam1104I	CTCTTC	3 cut(s)	327, 426, 476
EarI	CTCTTC	3 cut(s)	327, 426, 476
Eco24I	GRGCYC	2 cut(s)	120, 383
Eco47I	GGWCC	1 cut(s)	26
Eco88I	CYCGRG	1 cut(s)	496
EcoO109I	RGGNCCY	2 cut(s)	379, 380
EcoRII	CCWGG	1 cut(s)	382
EcoT38I	GRGCYC	2 cut(s)	120, 383
FaeI	CATG	4 cut(s)	276, 746, 880, 1031
FalI	AAGNNNNNCTT	4 cut(s)	240, 272, 1234, 1266
FaqI	GGGAC	1 cut(s)	275
FatI	CATG	4 cut(s)	272, 742, 876, 1027
FokI	GGATG	1 cut(s)	968
FriOI	GRGCYC	2 cut(s)	120, 383
FspBI	CTAG	2 cut(s)	345, 714
GlaI	GCGC	2 cut(s)	161, 1122
HaeIII	GGCC	4 cut(s)	89, 152, 381, 1267
HapII	CCGG	2 cut(s)	24, 60
HgaI	GACGC	1 cut(s)	60
HhaI	GCGC	2 cut(s)	162, 1123
Hin1I	GRCGYC	2 cut(s)	5, 71
Hin1II	CATG	4 cut(s)	276, 746, 880, 1031
Hin6I	GCGC	2 cut(s)	160, 1121
HinP1I	GCGC	2 cut(s)	160, 1121
HinfI	GANTC	4 cut(s)	216, 817, 867, 1105
HpaII	CCGG	2 cut(s)	24, 60
HphI	GGTGA	1 cut(s)	94
Hpy166II	GTNNAC	2 cut(s)	234, 310
Hpy188I	TCNGA	4 cut(s)	19, 76, 568, 730
Hpy188III	TCNNGA	6 cut(s)	121, 428, 496, 498, 1028, 1203
Hpy8I	GTNNAC	2 cut(s)	234, 310
Hpy99I	CGWCG	2 cut(s)	10, 13
HpyAV	CCTTC	2 cut(s)	289, 471
HpyCH4III	ACNGT	2 cut(s)	212, 894
HpyCH4V	TGCA	7 cut(s)	341, 439, 467, 642, 916, 950, 1049
HpyF10VI	GCNNNNNNNGC	5 cut(s)	48, 51, 77, 86, 347
HpyF3I	CTNAG	5 cut(s)	473, 1040, 1156, 1221, 1236
Hsp92I	GRCGYC	2 cut(s)	5, 71
Hsp92II	CATG	4 cut(s)	276, 746, 880, 1031
HspAI	GCGC	2 cut(s)	160, 1121
Kzo9I	GATC	8 cut(s)	19, 94, 355, 424, 563, 604, 1150, 1162
LguI	GCTCTTC	1 cut(s)	476
LmnI	GCTCC	4 cut(s)	62, 206, 632, 1192
Lsp1109I	GCAGC	7 cut(s)	172, 210, 325, 349, 353, 886, 1033
LweI	GCATC	5 cut(s)	171, 426, 476, 891, 935
MaeI	CTAG	2 cut(s)	345, 714
MaeIII	GTNAC	5 cut(s)	82, 217, 406, 668, 888
MalI	GATC	8 cut(s)	21, 96, 357, 426, 565, 606, 1152, 1164
MboI	GATC	8 cut(s)	19, 94, 355, 424, 563, 604, 1150, 1162
MboII	GAAGA	6 cut(s)	142, 344, 443, 493, 743, 1187
MflI	RGATCY	2 cut(s)	424, 1162
MhlI	GDGCHC	2 cut(s)	120, 383
MluCI	AATT	4 cut(s)	397, 504, 623, 1206
MlyI	GAGTC	3 cut(s)	225, 876, 1099
MmeI	TCCRAC	1 cut(s)	733
MseI	TTAA	3 cut(s)	396, 662, 774
MslI	CAYNNNNRTG	2 cut(s)	784, 858
MspA1I	CMGCKG	1 cut(s)	899
MspI	CCGG	2 cut(s)	24, 60
MspR9I	CCNGG	2 cut(s)	24, 384
MvaI	CCWGG	1 cut(s)	384
MwoI	GCNNNNNNNGC	5 cut(s)	48, 51, 77, 86, 347
NciI	CCSGG	1 cut(s)	24
NdeII	GATC	8 cut(s)	19, 94, 355, 424, 563, 604, 1150, 1162
NlaIII	CATG	4 cut(s)	276, 746, 880, 1031
NlaIV	GGNNCC	7 cut(s)	58, 278, 380, 381, 540, 688, 862
NmeAIII	GCCGAG	1 cut(s)	202
NmuCI	GTSAC	3 cut(s)	82, 217, 888
PaeR7I	CTCGAG	1 cut(s)	496
PagI	TCATGA	1 cut(s)	1027
PciSI	GCTCTTC	1 cut(s)	476
PfeI	GAWTC	1 cut(s)	817
PflMI	CCANNNNNTGG	3 cut(s)	534, 991, 1173
PleI	GAGTC	3 cut(s)	224, 875, 1099
PpsI	GAGTC	3 cut(s)	224, 875, 1099
PshBI	ATTAAT	1 cut(s)	396
Psp6I	CCWGG	1 cut(s)	382
PspGI	CCWGG	1 cut(s)	382
PspN4I	GGNNCC	7 cut(s)	58, 278, 380, 381, 540, 688, 862
PspOMI	GGGCCC	1 cut(s)	379
PspPI	GGNCC	4 cut(s)	26, 379, 380, 1266
PstI	CTGCAG	1 cut(s)	343
PsuI	RGATCY	2 cut(s)	424, 1162
PvuII	CAGCTG	1 cut(s)	899
RsaI	GTAC	6 cut(s)	110, 148, 271, 572, 595, 1216
RsaNI	GTAC	6 cut(s)	109, 147, 270, 571, 594, 1215
RseI	CAYNNNNRTG	2 cut(s)	784, 858
SapI	GCTCTTC	1 cut(s)	476
SaqAI	TTAA	3 cut(s)	396, 662, 774
Sau3AI	GATC	8 cut(s)	19, 94, 355, 424, 563, 604, 1150, 1162
Sau96I	GGNCC	4 cut(s)	26, 379, 380, 1266
ScaI	AGTACT	1 cut(s)	572
SchI	GAGTC	3 cut(s)	225, 876, 1099
ScrFI	CCNGG	2 cut(s)	24, 384
SduI	GDGCHC	2 cut(s)	120, 383
SfaNI	GCATC	5 cut(s)	171, 426, 476, 891, 935
SfcI	CTRYAG	1 cut(s)	339
Sfr274I	CTCGAG	1 cut(s)	496
SinI	GGWCC	1 cut(s)	26
SlaI	CTCGAG	1 cut(s)	496
SmiMI	CAYNNNNRTG	2 cut(s)	784, 858
SmlI	CTYRAG	2 cut(s)	119, 496
SmoI	CTYRAG	2 cut(s)	119, 496
Sse9I	AATT	4 cut(s)	397, 504, 623, 1206
SsiI	CCGC	6 cut(s)	42, 45, 48, 51, 54, 80
SspMI	CTAG	2 cut(s)	345, 714
StyD4I	CCNGG	2 cut(s)	22, 382
TaaI	ACNGT	2 cut(s)	212, 894
TaqI	TCGA	1 cut(s)	497
TaqII	GACCGA	1 cut(s)	50
TasI	AATT	4 cut(s)	397, 504, 623, 1206
TatI	WGTACW	3 cut(s)	108, 269, 570
TauI	GCSGC	4 cut(s)	45, 48, 51, 54
TfiI	GAWTC	1 cut(s)	817
Tru1I	TTAA	3 cut(s)	396, 662, 774
Tru9I	TTAA	3 cut(s)	396, 662, 774
TscAI	CASTG	1 cut(s)	493
TseFI	GTSAC	3 cut(s)	82, 217, 888
TseI	GCWGC	7 cut(s)	185, 198, 338, 341, 362, 899, 1046
Tsp45I	GTSAC	3 cut(s)	82, 217, 888
TspDTI	ATGAA	3 cut(s)	261, 345, 981
TspGWI	ACGGA	1 cut(s)	1098
TspRI	CASTG	1 cut(s)	493
Van91I	CCANNNNNTGG	3 cut(s)	534, 991, 1173
VpaK11BI	GGWCC	1 cut(s)	26
VspI	ATTAAT	1 cut(s)	396
XapI	RAATTY	3 cut(s)	504, 623, 1206
XcmI	CCANNNNNNNNNTGG	1 cut(s)	988
XhoI	CTCGAG	1 cut(s)	496
XspI	CTAG	2 cut(s)	345, 714
ZrmI	AGTACT	1 cut(s)	572

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.