FvH4_6g24090

AP2-like ethylene-responsive transcription factor

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
Physical Location & Seq
Reverse (-)
18115766 .. 18120143
4378 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g24090.t3

Sequence Viewer

Length: 1269 bp
ATGGCTTCGTCGTCGTCGGATCCTGGTCCCAAGACCGAGAGCGGAAGCGGCAGCGGCGGCGGCGGAGGAGGAGGAGCGGAGGCCTCGGAAGCGGCGCCGAACGATCAGCAGTTGCTTTACAGAGGGCTGAAGAAGGCTAAGAAGGAGAGAGGCTGCACCGCCAAAGAGCGCATCAGCAAAATGCCTCCCTGTGCCGCCGGAAAACGGAGCTCCATTTACCGTGGAGTCACTCGGCATAGGTGGACGGGCCGTTACGAAGCTCATCTCTGGGATAAAAGTACCTGGAACCAGAACCAGAATAAGAAGGGAAAGCAAGTGTACTTGGGGGCGTATGATGATGAAGAGGCTGCAGCCAGAGCTTATGATCTTGCTGCCTTGAAATATTGGGGCCCCGGCACTCTGATTAATTTCCCTGTTACTGATTACACAAGAGATCTCGAAGAAATGCAGAATGTGTCAAGGGAGGAATATCTTGCATCCCTTCGCAGGAAGAGCAGTGGCTTCTCTAGAGGAATGTCTAAATATCGTGCACTCTCCAGCCGGTGGGAGCCATCGTTTGGTCGCATGGGTGGATCTGAATACTTCAATAGCATCCATTATGGCACAGGAGATGATCAAGCAACAGAAAATGAATTTTTAGGAACGTTTTGCATTGAAAGAAAGATTGATTTAACAAGTTACATCAAGTGGTGGGGTCCTAACAAAACTCGTCAAGCGGAAGGCATCATAAAATCATCTGAGGATGTAAAACATGGTTTCGCTGGAGATAGTGGATGTGAACTAAAAACATTGGAATGGGAAACGCAGCCCACTGAACCATTCCAGATGCCCTGTTTGGGTGTCTGCCATGAAGGTGAAAAGCAGAAAGGTGCCAGAGTCTCTGCCATGAGTATCTTGTCACGGTCAGCGGCTTATAAAAGCTTGCAAGAGAAAGCATCAATTAAACAAGAAAAGAATGCAGATAATGACGAGAATGAAAACAAAAATATGATCCACAAAAAAGACTATGGCAAGGAAATTGAGAAACCCTCAAGTCATGATGGTGGGGATGAGAGACTGAGTGCTGCATTAGGAATGAGTGGTGGATTGTCTCTCCAGAGGAATACATACCCATTGACTCCATTCTTGTCTGCACCACTGCTGACTAACTACAATATGATTGATCCATTAGTAGACCCCATTCTTTGGACATCTCTTGCTCCTAATCTTCCTGAGGTTACAAAGACTGAGACCAGTGCAAGTTTCACTTTATTTCGGCCTGACGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

423

Amino Acids

46.76

Weight (kDa)

7.58

Isoelectric Point (pI)

50.01

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 915
AccB1I GGYRCC 2 cut(s) 94, 869
AccB7I CCANNNNNTGG 3 cut(s) 543, 557, 1185
AccBSI CCGCTC 2 cut(s) 42, 77
AccI GTMKAC 1 cut(s) 1173
AclI AACGTT 1 cut(s) 644
AclWI GGATC 5 cut(s) 14, 27, 580, 985, 1157
AcsI RAATTY 1 cut(s) 632
AcuI CTGAAG 1 cut(s) 149
AcyI GRCGYC 1 cut(s) 95
AfaI GTAC 2 cut(s) 280, 320
AfiI CCNNNNNNNGG 6 cut(s) 204, 486, 543, 557, 836, 1185
AgsI TTSAA 3 cut(s) 379, 586, 656
AjnI CCWGG 2 cut(s) 22, 281
AluBI AGCT 4 cut(s) 210, 260, 359, 921
AluI AGCT 4 cut(s) 210, 260, 359, 921
Alw21I GWGCWC 2 cut(s) 212, 532
Alw26I GTCTC 4 cut(s) 883, 1048, 1095, 1223
Alw44I GTGCAC 1 cut(s) 528
AlwI GGATC 5 cut(s) 14, 27, 580, 985, 1157
AoxI GGCC 4 cut(s) 81, 247, 388, 1256
ApaI GGGCCC 1 cut(s) 392
ApaLI GTGCAC 1 cut(s) 528
ApeKI GCWGC 7 cut(s) 51, 153, 347, 350, 371, 805, 1064
ApoI RAATTY 1 cut(s) 632
AseI ATTAAT 1 cut(s) 405
AspLEI GCGC 2 cut(s) 97, 171
AspS9I GGNCC 5 cut(s) 26, 247, 388, 389, 695
AsuC2I CCSGG 1 cut(s) 393
AsuHPI GGTGA 1 cut(s) 866
AvaII GGWCC 2 cut(s) 26, 695
AxyI CCTNAGG 1 cut(s) 1212
BaeGI GKGCMC 2 cut(s) 392, 532
BamHI GGATCC 1 cut(s) 19
BanI GGYRCC 2 cut(s) 94, 869
BanII GRGCYC 2 cut(s) 212, 392
Bbv12I GWGCWC 2 cut(s) 212, 532
BbvI GCAGC 7 cut(s) 63, 140, 334, 358, 362, 817, 1051
BccI CCATC 2 cut(s) 559, 1034
BceAI ACGGC 1 cut(s) 234
BciT130I CCWGG 2 cut(s) 24, 283
BclI TGATCA 1 cut(s) 613
BcnI CCSGG 1 cut(s) 393
BcoDI GTCTC 4 cut(s) 883, 1048, 1095, 1223
BfaI CTAG 1 cut(s) 507
BfmI CTRYAG 1 cut(s) 348
BfoI RGCGCY 1 cut(s) 98
BglII AGATCT 1 cut(s) 433
Bme1390I CCNGG 3 cut(s) 24, 283, 393
Bme18I GGWCC 2 cut(s) 26, 695
BmgT120I GGNCC 5 cut(s) 26, 247, 388, 389, 695
BmrFI CCNGG 3 cut(s) 24, 283, 393
BmsI GCATC 6 cut(s) 180, 485, 600, 732, 816, 944
BplI GAGNNNNNCTC 2 cut(s) 1013, 1045
BpmI CTGGAG 3 cut(s) 520, 783, 1079
BpuEI CTTGAG 1 cut(s) 1015
BpuMI CCSGG 1 cut(s) 393
BsaHI GRCGYC 1 cut(s) 95
BsaI GGTCTC 1 cut(s) 1223
BsaJI CCNNGG 3 cut(s) 84, 220, 391
BsaXI ACNNNNNCTCC 2 cut(s) 539, 569
Bsc4I CCNNNNNNNGG 6 cut(s) 204, 486, 543, 557, 836, 1185
Bse118I RCCGGY 1 cut(s) 540
Bse1I ACTGG 1 cut(s) 1233
Bse21I CCTNAGG 1 cut(s) 1212
BseBI CCWGG 2 cut(s) 24, 283
BseDI CCNNGG 3 cut(s) 84, 220, 391
BseGI GGATG 5 cut(s) 476, 591, 748, 779, 1054
BseLI CCNNNNNNNGG 6 cut(s) 204, 486, 543, 557, 836, 1185
BseMII CTCAG 4 cut(s) 729, 1049, 1203, 1218
BseNI ACTGG 1 cut(s) 1233
BseRI GAGGAG 3 cut(s) 81, 84, 87
BseSI GKGCMC 2 cut(s) 392, 532
BseXI GCAGC 7 cut(s) 63, 140, 334, 358, 362, 817, 1051
BsgI GTGCAG 2 cut(s) 139, 1116
BshFI GGCC 4 cut(s) 83, 249, 390, 1258
BshNI GGYRCC 2 cut(s) 94, 869
BsiHKAI GWGCWC 2 cut(s) 212, 532
BsiSI CCGG 3 cut(s) 198, 393, 541
BslFI GGGAC 1 cut(s) 12
BslI CCNNNNNNNGG 6 cut(s) 204, 486, 543, 557, 836, 1185
BsmAI GTCTC 4 cut(s) 883, 1048, 1095, 1223
BsmFI GGGAC 1 cut(s) 12
BsmI GAATGC 1 cut(s) 961
BsnI GGCC 4 cut(s) 83, 249, 390, 1258
Bso31I GGTCTC 1 cut(s) 1223
Bsp120I GGGCCC 1 cut(s) 388
Bsp1286I GDGCHC 3 cut(s) 212, 392, 532
Bsp143I GATC 8 cut(s) 19, 103, 364, 433, 572, 613, 990, 1162
BspANI GGCC 4 cut(s) 83, 249, 390, 1258
BspCNI CTCAG 4 cut(s) 730, 1050, 1204, 1219
BspHI TCATGA 1 cut(s) 1036
BspMAI CTGCAG 1 cut(s) 352
BspPI GGATC 5 cut(s) 14, 27, 580, 985, 1157
BspQI GCTCTTC 1 cut(s) 485
BspT107I GGYRCC 2 cut(s) 94, 869
BspTNI GGTCTC 1 cut(s) 1223
BsrBI CCGCTC 2 cut(s) 42, 77
BsrFI RCCGGY 1 cut(s) 540
BsrI ACTGG 1 cut(s) 1233
BssAI RCCGGY 1 cut(s) 540
BssECI CCNNGG 3 cut(s) 84, 220, 391
BssMI GATC 8 cut(s) 19, 103, 364, 433, 572, 613, 990, 1162
BssNI GRCGYC 1 cut(s) 95
Bst2UI CCWGG 2 cut(s) 24, 283
Bst4CI ACNGT 2 cut(s) 221, 903
Bst6I CTCTTC 2 cut(s) 336, 485
BstACI GRCGYC 1 cut(s) 95
BstC8I GCNNGC 1 cut(s) 923
BstDEI CTNAG 5 cut(s) 138, 738, 1058, 1212, 1227
BstDSI CCRYGG 1 cut(s) 220
BstF5I GGATG 5 cut(s) 476, 591, 748, 779, 1054
BstH2I RGCGCY 1 cut(s) 98
BstHHI GCGC 2 cut(s) 97, 171
BstKTI GATC 8 cut(s) 22, 106, 367, 436, 575, 616, 993, 1165
BstMAI GTCTC 4 cut(s) 883, 1048, 1095, 1223
BstMBI GATC 8 cut(s) 19, 103, 364, 433, 572, 613, 990, 1162
BstMWI GCNNNNNNNGC 7 cut(s) 48, 54, 57, 60, 89, 356, 492
BstNI CCWGG 2 cut(s) 24, 283
BstSCI CCNGG 3 cut(s) 22, 281, 391
BstSFI CTRYAG 1 cut(s) 348
BstSLI GKGCMC 2 cut(s) 392, 532
BstV1I GCAGC 7 cut(s) 63, 140, 334, 358, 362, 817, 1051
BstX2I RGATCY 3 cut(s) 19, 433, 572
BstYI RGATCY 3 cut(s) 19, 433, 572
Bsu36I CCTNAGG 1 cut(s) 1212
BsuRI GGCC 4 cut(s) 83, 249, 390, 1258
BtgI CCRYGG 1 cut(s) 220
BtsCI GGATG 5 cut(s) 476, 591, 748, 779, 1054
BtsI GCAGTG 2 cut(s) 502, 1136
BtsIMutI CAGTG 4 cut(s) 502, 810, 1136, 1240
Cac8I GCNNGC 1 cut(s) 923
CciI TCATGA 1 cut(s) 1036
CfoI GCGC 2 cut(s) 97, 171
Cfr10I RCCGGY 1 cut(s) 540
Cfr13I GGNCC 5 cut(s) 26, 247, 388, 389, 695
Csp6I GTAC 2 cut(s) 279, 319
CviAII CATG 5 cut(s) 565, 752, 848, 886, 1037
CviQI GTAC 2 cut(s) 279, 319
DdeI CTNAG 5 cut(s) 138, 738, 1058, 1212, 1227
DinI GGCGCC 1 cut(s) 96
DpnI GATC 8 cut(s) 21, 105, 366, 435, 574, 615, 992, 1164
DpnII GATC 8 cut(s) 19, 103, 364, 433, 572, 613, 990, 1162
Eam1104I CTCTTC 2 cut(s) 336, 485
EarI CTCTTC 2 cut(s) 336, 485
EciI GGCGGA 1 cut(s) 78
Ecl136II GAGCTC 1 cut(s) 210
Eco147I AGGCCT 1 cut(s) 83
Eco24I GRGCYC 2 cut(s) 212, 392
Eco31I GGTCTC 1 cut(s) 1223
Eco47I GGWCC 2 cut(s) 26, 695
Eco53kI GAGCTC 1 cut(s) 210
Eco57I CTGAAG 1 cut(s) 149
Eco81I CCTNAGG 1 cut(s) 1212
EcoICRI GAGCTC 1 cut(s) 210
EcoO109I RGGNCCY 3 cut(s) 388, 389, 695
EcoRII CCWGG 2 cut(s) 22, 281
EcoT38I GRGCYC 2 cut(s) 212, 392
EgeI GGCGCC 1 cut(s) 96
EheI GGCGCC 1 cut(s) 96
FaeI CATG 5 cut(s) 568, 755, 851, 889, 1040
FalI AAGNNNNNCTT 2 cut(s) 1231, 1263
FaqI GGGAC 1 cut(s) 12
FatI CATG 5 cut(s) 564, 751, 847, 885, 1036
FbaI TGATCA 1 cut(s) 613
FblI GTMKAC 1 cut(s) 1173
FokI GGATG 5 cut(s) 463, 578, 755, 786, 1061
FriOI GRGCYC 2 cut(s) 212, 392
FspBI CTAG 1 cut(s) 507
GlaI GCGC 2 cut(s) 96, 170
GsuI CTGGAG 3 cut(s) 520, 783, 1079
HaeII RGCGCY 1 cut(s) 98
HaeIII GGCC 4 cut(s) 83, 249, 390, 1258
HapII CCGG 3 cut(s) 198, 393, 541
HhaI GCGC 2 cut(s) 97, 171
Hin1I GRCGYC 1 cut(s) 95
Hin1II CATG 5 cut(s) 568, 755, 851, 889, 1040
Hin6I GCGC 2 cut(s) 95, 169
HinP1I GCGC 2 cut(s) 95, 169
HindIII AAGCTT 1 cut(s) 919
HinfI GANTC 3 cut(s) 225, 876, 1117
HpaII CCGG 3 cut(s) 198, 393, 541
HphI GGTGA 1 cut(s) 866
Hpy166II GTNNAC 5 cut(s) 243, 319, 530, 779, 1174
Hpy188I TCNGA 5 cut(s) 19, 88, 402, 577, 739
Hpy188III TCNNGA 6 cut(s) 437, 507, 823, 1037, 1096, 1211
Hpy8I GTNNAC 5 cut(s) 243, 319, 530, 779, 1174
Hpy99I CGWCG 3 cut(s) 13, 16, 19
HpyAV CCTTC 6 cut(s) 127, 136, 298, 491, 713, 845
HpyCH4III ACNGT 2 cut(s) 221, 903
HpyCH4IV ACGT 1 cut(s) 644
HpyF10VI GCNNNNNNNGC 7 cut(s) 48, 54, 57, 60, 89, 356, 492
HpyF3I CTNAG 5 cut(s) 138, 738, 1058, 1212, 1227
HpySE526I ACGT 1 cut(s) 644
Hsp92I GRCGYC 1 cut(s) 95
Hsp92II CATG 5 cut(s) 568, 755, 851, 889, 1040
HspAI GCGC 2 cut(s) 95, 169
KasI GGCGCC 1 cut(s) 94
Ksp22I TGATCA 1 cut(s) 613
Kzo9I GATC 8 cut(s) 19, 103, 364, 433, 572, 613, 990, 1162
LguI GCTCTTC 1 cut(s) 485
LmnI GCTCC 5 cut(s) 74, 207, 215, 547, 1204
Lsp1109I GCAGC 7 cut(s) 63, 140, 334, 358, 362, 817, 1051
LweI GCATC 6 cut(s) 180, 485, 600, 732, 816, 944
MaeI CTAG 1 cut(s) 507
MaeII ACGT 1 cut(s) 644
MaeIII GTNAC 6 cut(s) 226, 251, 415, 677, 897, 1216
MalI GATC 8 cut(s) 21, 105, 366, 435, 574, 615, 992, 1164
MbiI CCGCTC 2 cut(s) 42, 77
MboI GATC 8 cut(s) 19, 103, 364, 433, 572, 613, 990, 1162
MboII GAAGA 5 cut(s) 142, 353, 452, 502, 1199
MflI RGATCY 3 cut(s) 19, 433, 572
MhlI GDGCHC 3 cut(s) 212, 392, 532
MluCI AATT 4 cut(s) 406, 632, 939, 1017
Mly113I GGCGCC 1 cut(s) 95
MlyI GAGTC 3 cut(s) 234, 885, 1111
MseI TTAA 3 cut(s) 405, 671, 942
MslI CAYNNNNRTG 3 cut(s) 793, 852, 1041
MspA1I CMGCKG 2 cut(s) 54, 908
MspI CCGG 3 cut(s) 198, 393, 541
MspR9I CCNGG 3 cut(s) 24, 283, 393
Mva1269I GAATGC 1 cut(s) 961
MvaI CCWGG 2 cut(s) 24, 283
MwoI GCNNNNNNNGC 7 cut(s) 48, 54, 57, 60, 89, 356, 492
NarI GGCGCC 1 cut(s) 95
NciI CCSGG 1 cut(s) 393
NdeII GATC 8 cut(s) 19, 103, 364, 433, 572, 613, 990, 1162
NlaIII CATG 5 cut(s) 568, 755, 851, 889, 1040
NmeAIII GCCGAG 1 cut(s) 211
NmuCI GTSAC 2 cut(s) 226, 897
PagI TCATGA 1 cut(s) 1036
PceI AGGCCT 1 cut(s) 83
PciSI GCTCTTC 1 cut(s) 485
PctI GAATGC 1 cut(s) 961
PflMI CCANNNNNTGG 3 cut(s) 543, 557, 1185
PleI GAGTC 3 cut(s) 233, 884, 1111
PluTI GGCGCC 1 cut(s) 98
PpsI GAGTC 3 cut(s) 233, 884, 1111
PpuMI RGGWCCY 1 cut(s) 695
PshBI ATTAAT 1 cut(s) 405
PsiI TTATAA 1 cut(s) 915
Psp124BI GAGCTC 1 cut(s) 212
Psp1406I AACGTT 1 cut(s) 644
Psp5II RGGWCCY 1 cut(s) 695
Psp6I CCWGG 2 cut(s) 22, 281
PspGI CCWGG 2 cut(s) 22, 281
PspOMI GGGCCC 1 cut(s) 388
PspPI GGNCC 5 cut(s) 26, 247, 388, 389, 695
PspPPI RGGWCCY 1 cut(s) 695
PstI CTGCAG 1 cut(s) 352
PsuI RGATCY 3 cut(s) 19, 433, 572
RsaI GTAC 2 cut(s) 280, 320
RsaNI GTAC 2 cut(s) 279, 319
RseI CAYNNNNRTG 3 cut(s) 793, 852, 1041
SacI GAGCTC 1 cut(s) 212
SapI GCTCTTC 1 cut(s) 485
SaqAI TTAA 3 cut(s) 405, 671, 942
Sau3AI GATC 8 cut(s) 19, 103, 364, 433, 572, 613, 990, 1162
Sau96I GGNCC 5 cut(s) 26, 247, 388, 389, 695
SchI GAGTC 3 cut(s) 234, 885, 1111
ScrFI CCNGG 3 cut(s) 24, 283, 393
SduI GDGCHC 3 cut(s) 212, 392, 532
SfaNI GCATC 6 cut(s) 180, 485, 600, 732, 816, 944
SfcI CTRYAG 1 cut(s) 348
SfoI GGCGCC 1 cut(s) 96
SinI GGWCC 2 cut(s) 26, 695
SmiMI CAYNNNNRTG 3 cut(s) 793, 852, 1041
SmlI CTYRAG 1 cut(s) 1030
SmoI CTYRAG 1 cut(s) 1030
Sse9I AATT 4 cut(s) 406, 632, 939, 1017
SseBI AGGCCT 1 cut(s) 83
SspDI GGCGCC 1 cut(s) 94
SspI AATATT 1 cut(s) 383
SspMI CTAG 1 cut(s) 507
SstI GAGCTC 1 cut(s) 212
StuI AGGCCT 1 cut(s) 83
StyD4I CCNGG 3 cut(s) 22, 281, 391
TaaI ACNGT 2 cut(s) 221, 903
TaiI ACGT 1 cut(s) 647
TaqI TCGA 1 cut(s) 438
TaqII GACCGA 1 cut(s) 50
TasI AATT 4 cut(s) 406, 632, 939, 1017
TatI WGTACW 1 cut(s) 318
TauI GCSGC 7 cut(s) 51, 57, 60, 63, 95, 197, 911
Tru1I TTAA 3 cut(s) 405, 671, 942
Tru9I TTAA 3 cut(s) 405, 671, 942
TscAI CASTG 4 cut(s) 502, 817, 1143, 1240
TseFI GTSAC 2 cut(s) 226, 897
TseI GCWGC 7 cut(s) 51, 153, 347, 350, 371, 805, 1064
Tsp45I GTSAC 2 cut(s) 226, 897
TspDTI ATGAA 4 cut(s) 354, 645, 864, 990
TspGWI ACGGA 1 cut(s) 220
TspRI CASTG 4 cut(s) 502, 817, 1143, 1240
Van91I CCANNNNNTGG 3 cut(s) 543, 557, 1185
VneI GTGCAC 1 cut(s) 528
VpaK11BI GGWCC 2 cut(s) 26, 695
VspI ATTAAT 1 cut(s) 405
XapI RAATTY 1 cut(s) 632
XbaI TCTAGA 1 cut(s) 506
XmiI GTMKAC 1 cut(s) 1173
XspI CTAG 1 cut(s) 507
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.