Rmu_sc0015893.1_g000013

AP2-like ethylene-responsive transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0015893.1
OG0006364
Physical Location & Seq
Forward (+)
47163 .. 47489
327 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0015893.1_g000013.1.cds

Sequence Viewer

Length: 327 bp
atggcttcgtcgtcctcggatcctggtccgaagaccgaaagcggaagcggcagcggcggcggagcggaggcctcggaagcggtggcggcggctgcggcggcggtggcgaccgatcagcaattgctttacagagggctgaagaaagcgaagaaagagagaggttgcacggccaaagagcgcatcagcaaaatgcctccctgtgccgctggaaaacgcagctccatttaccgtggagtcactcggtcagtccctctttatttgcttactcacagaatgtgtcaatccgattgttttgttttcgagctgatgatatggcctctgatttag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
AP2

Protein Analysis

108

Amino Acids

11.4

Weight (kDa)

9.39

Isoelectric Point (pI)

46.47

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 65
AclWI GGATC 2 cut(s) 14, 27
AcoI YGGCCR 1 cut(s) 168
AcuI CTGAAG 1 cut(s) 158
AjnI CCWGG 1 cut(s) 22
AluBI AGCT 2 cut(s) 219, 304
AluI AGCT 2 cut(s) 219, 304
AlwI GGATC 2 cut(s) 14, 27
AoxI GGCC 3 cut(s) 69, 168, 314
ApeKI GCWGC 3 cut(s) 51, 92, 216
AspLEI GCGC 1 cut(s) 180
AspS9I GGNCC 1 cut(s) 26
AvaII GGWCC 1 cut(s) 26
BamHI GGATCC 1 cut(s) 19
BbsI GAAGAC 1 cut(s) 38
BbvI GCAGC 3 cut(s) 63, 79, 228
BceAI ACGGC 1 cut(s) 183
BciT130I CCWGG 1 cut(s) 24
Bme1390I CCNGG 1 cut(s) 24
Bme18I GGWCC 1 cut(s) 26
BmgT120I GGNCC 1 cut(s) 26
BmiI GGNNCC 1 cut(s) 21
BmrFI CCNGG 1 cut(s) 24
BmsI GCATC 1 cut(s) 189
BpiI GAAGAC 1 cut(s) 38
BsaJI CCNNGG 3 cut(s) 15, 72, 229
BseBI CCWGG 1 cut(s) 24
BseDI CCNNGG 3 cut(s) 15, 72, 229
BseXI GCAGC 3 cut(s) 63, 79, 228
Bsh1285I CGRYCG 1 cut(s) 111
BshFI GGCC 3 cut(s) 71, 170, 316
BsiEI CGRYCG 1 cut(s) 111
BslFI GGGAC 1 cut(s) 233
BsmFI GGGAC 1 cut(s) 233
BsnI GGCC 3 cut(s) 71, 170, 316
Bsp143I GATC 2 cut(s) 19, 112
BspANI GGCC 3 cut(s) 71, 170, 316
BspLI GGNNCC 1 cut(s) 21
BspPI GGATC 2 cut(s) 14, 27
BsrBI CCGCTC 1 cut(s) 65
BssECI CCNNGG 3 cut(s) 15, 72, 229
BssMI GATC 2 cut(s) 19, 112
Bst2UI CCWGG 1 cut(s) 24
Bst4CI ACNGT 1 cut(s) 230
BstDSI CCRYGG 1 cut(s) 229
BstHHI GCGC 1 cut(s) 180
BstKTI GATC 2 cut(s) 22, 115
BstMBI GATC 2 cut(s) 19, 112
BstMCI CGRYCG 1 cut(s) 111
BstMWI GCNNNNNNNGC 9 cut(s) 48, 54, 57, 77, 86, 92, 95, 98, 104
BstNI CCWGG 1 cut(s) 24
BstSCI CCNGG 1 cut(s) 22
BstV1I GCAGC 3 cut(s) 63, 79, 228
BstV2I GAAGAC 1 cut(s) 38
BstX2I RGATCY 1 cut(s) 19
BstYI RGATCY 1 cut(s) 19
BsuRI GGCC 3 cut(s) 71, 170, 316
BtgI CCRYGG 1 cut(s) 229
CfoI GCGC 1 cut(s) 180
Cfr13I GGNCC 1 cut(s) 26
CviJI RGCY 8 cut(s) 5, 71, 92, 136, 170, 219, 304, 316
CviKI_1 RGCY 8 cut(s) 5, 71, 92, 136, 170, 219, 304, 316
DpnI GATC 2 cut(s) 21, 114
DpnII GATC 2 cut(s) 19, 112
EaeI YGGCCR 1 cut(s) 168
EciI GGCGGA 1 cut(s) 75
Eco147I AGGCCT 1 cut(s) 71
Eco47I GGWCC 1 cut(s) 26
Eco57I CTGAAG 1 cut(s) 158
EcoRII CCWGG 1 cut(s) 22
FaiI YATR 1 cut(s) 313
FaqI GGGAC 1 cut(s) 233
GlaI GCGC 1 cut(s) 179
HaeIII GGCC 3 cut(s) 71, 170, 316
HhaI GCGC 1 cut(s) 180
Hin6I GCGC 1 cut(s) 178
HinP1I GCGC 1 cut(s) 178
HinfI GANTC 1 cut(s) 234
Hpy188I TCNGA 5 cut(s) 19, 30, 76, 286, 321
Hpy99I CGWCG 1 cut(s) 13
HpyCH4III ACNGT 1 cut(s) 230
HpyCH4V TGCA 1 cut(s) 165
HpyF10VI GCNNNNNNNGC 9 cut(s) 48, 54, 57, 77, 86, 92, 95, 98, 104
HspAI GCGC 1 cut(s) 178
Kzo9I GATC 2 cut(s) 19, 112
LmnI GCTCC 2 cut(s) 62, 224
LpnPI CCDG 4 cut(s) 9, 36, 192, 211
Lsp1109I GCAGC 3 cut(s) 63, 79, 228
LweI GCATC 1 cut(s) 189
MaeIII GTNAC 1 cut(s) 235
MalI GATC 2 cut(s) 21, 114
MbiI CCGCTC 1 cut(s) 65
MboI GATC 2 cut(s) 19, 112
MboII GAAGA 3 cut(s) 43, 151, 160
MfeI CAATTG 1 cut(s) 119
MflI RGATCY 1 cut(s) 19
MluCI AATT 1 cut(s) 119
MlyI GAGTC 1 cut(s) 243
MnlI CCTC 8 cut(s) 25, 61, 82, 125, 152, 204, 261, 327
MspA1I CMGCKG 2 cut(s) 54, 206
MspR9I CCNGG 1 cut(s) 24
MunI CAATTG 1 cut(s) 119
MvaI CCWGG 1 cut(s) 24
MwoI GCNNNNNNNGC 9 cut(s) 48, 54, 57, 77, 86, 92, 95, 98, 104
NdeII GATC 2 cut(s) 19, 112
NlaIV GGNNCC 1 cut(s) 21
NmuCI GTSAC 1 cut(s) 235
PceI AGGCCT 1 cut(s) 71
PleI GAGTC 1 cut(s) 242
PpsI GAGTC 1 cut(s) 242
Psp6I CCWGG 1 cut(s) 22
PspGI CCWGG 1 cut(s) 22
PspN4I GGNNCC 1 cut(s) 21
PspPI GGNCC 1 cut(s) 26
PsuI RGATCY 1 cut(s) 19
Sau3AI GATC 2 cut(s) 19, 112
Sau96I GGNCC 1 cut(s) 26
SchI GAGTC 1 cut(s) 243
ScrFI CCNGG 1 cut(s) 24
SetI ASST 3 cut(s) 163, 221, 306
SfaNI GCATC 1 cut(s) 189
SinI GGWCC 1 cut(s) 26
Sse9I AATT 1 cut(s) 119
SseBI AGGCCT 1 cut(s) 71
StuI AGGCCT 1 cut(s) 71
StyD4I CCNGG 1 cut(s) 22
TaaI ACNGT 1 cut(s) 230
TaqI TCGA 1 cut(s) 300
TaqII GACCGA 3 cut(s) 50, 125, 231
TasI AATT 1 cut(s) 119
TauI GCSGC 8 cut(s) 51, 57, 60, 89, 92, 98, 101, 206
TseFI GTSAC 1 cut(s) 235
TseI GCWGC 3 cut(s) 51, 92, 216
Tsp45I GTSAC 1 cut(s) 235
VpaK11BI GGWCC 1 cut(s) 26
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.