Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr12

Orthogroup ID

OG0006364

Physical Location & Seq

Genomic Coordinates Reverse (-)

9733024 .. 9736183

Gene Structure 3160 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD12G1079800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1236 bp

ATGGCGTCGTCGTCCTCGGATCCCGGTCCGAAGACCGAAAGCGGCGGCGGCAGTGGCGGTGGGGGTGCAGAGCCGTCGGAGGCGGTGGTGGCGAGCGATCAGCTAATGGTGTACAGAGGGGTAAAGAAATCGAAGAAAGAGAGAGGATGTACGGCGAAAGAGCGCATCAGCAAGATGCCTCCGTGTGCTGCTGGAAAACGCAGCTCCATTTACCGTGGAGTCACTCGGCATAGGTGGACAGGTCGTTATGAGGGTCATCTTTGGGATAAAAGTACTTGGAATCAGAACCAGAATAAGAAGGGAAAGCAAGCATTTGATTTCTTGGATTGTGCATGCAAATGTTGGCGCATGACGTTTCGATATGTATTCCAGTTTACTTGGCATACGGAATTTACAGGGGCCTATGACGACGAAGAGGCTGCAGCTAGAGCTTATGATCTTGCTGCCTTGAAATATTGGGGTCCTGGCACTCTCATCAATTTTCCTGTTACTGATTACCCAAGGGATCTTGAAGAGATGCAGAATGCCAGAATGTGTCAAGGGAGGAATACCTTGCATCTCTTCGGAGGTGAAAAGGGCAGTGGTTTCTCAAGAGGAATTTCTAAATATCGTGGCCTTTCTAGTCGTTGGGAGCCGTCATTGTGTCGTATGGGTGGATCTGAGTACTTCGATAGCATACATTATGGCATTGATCCAGCAACAGAAAGTGAACTTTTGGGAGCTTTTTGCATTGAAAGAAAGATTGACCTAACGAGTTACATCAAGTGGTGGGGACCCAACAGATCTCGTCAAGGTGAAACTGGCATGAAATCGTCAGAAGAAACAAAGAACGTTTGTGTTGGAGATATTGGAGTTGAACTTAAAACATTAGAATGGGGAATCCAGCCTACTGAACCATACCAGATGCCCCATTTGGGCATCTCTCATGTAAGTAAAAAGCATAAAGGTACCAGAGTCTCTGCCATGAGCATCCTCTTATGGTCAGCTGCCTATAAGAACTTGCAAGAGAAAGCATCACAAATGGAGGAAAACAATGCAGATAATGACGAGAATGAAAACAAAAATACCATCCACAAGATGGATTATGGCAAGGCAGTTGAGAAATCCACAAGTCATGACGAGAGACTTAGTTCTGCATTAGGAATGAGTGGTGGAATGTCTCTCCAAACAGATGTGTTCCCGTTGGCTCCCTTCTTGTCTGTACCACTTCTGACCAACTACAATATCCCTTGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

412

Amino Acids

45.98

Weight (kDa)

8.42

Isoelectric Point (pI)

47.55

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006364)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G41710 AT2G41710 AT2G41710 AT2G41710
fragaria_vesca	FvH4_6g24090 FvH4_6g24090 FvH4_6g24090
malus_domestica	MD12G1075200.v1.1 MD12G1079800.v1.1 MD14G1076000.v1.1
prunus_persica	Prupe.7G058300_v2.0.a1
pyrus_communis	pycom12g06470 pycom14g06450
rosa_chinensis	RchiOBHm_Chr3g0482661 RchiOBHm_Chr6g0258101
rosa_laevigata	RLG00000023334
rosa_multiflora	Rmu_co8231061.1_g000001 Rmu_sc0006069.1_g000007 Rmu_sc0011850.1_g000001 Rmu_sc0015893.1_g000013
rosa_roxburghii	Rroxscaffold_1G00037300 Rroxscaffold_6G00399050
rosa_rugosa	Rorug03G0197800
rosa_samantha	Rh3AG249100 Rh3BG284400 Rh3CG282300
rosa_wichuraiana	Rw3G022500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	947
AccB1I	GGYRCC	1 cut(s)	947
AccB7I	CCANNNNNTGG	1 cut(s)	1078
AciI	CCGC	5 cut(s)	42, 45, 48, 57, 83
AclI	AACGTT	1 cut(s)	831
AclWI	GGATC	5 cut(s)	14, 27, 513, 664, 686
AcsI	RAATTY	2 cut(s)	389, 597
AcyI	GRCGYC	1 cut(s)	5
AfaI	GTAC	6 cut(s)	113, 151, 274, 665, 949, 1203
AfiI	CCNNNNNNNGG	2 cut(s)	914, 1078
AgsI	TTSAA	4 cut(s)	451, 512, 734, 857
AjnI	CCWGG	1 cut(s)	463
AluBI	AGCT	6 cut(s)	103, 204, 425, 431, 722, 986
AluI	AGCT	6 cut(s)	103, 204, 425, 431, 722, 986
Alw26I	GTCTC	3 cut(s)	961, 1117, 1164
AlwI	GGATC	5 cut(s)	14, 27, 513, 664, 686
AoxI	GGCC	2 cut(s)	399, 613
ApeKI	GCWGC	6 cut(s)	188, 201, 419, 422, 443, 986
ApoI	RAATTY	2 cut(s)	389, 597
Asp718I	GGTACC	1 cut(s)	947
AspLEI	GCGC	2 cut(s)	165, 348
AspS9I	GGNCC	4 cut(s)	26, 399, 461, 773
AsuC2I	CCSGG	1 cut(s)	24
AsuHPI	GGTGA	2 cut(s)	581, 806
AvaII	GGWCC	3 cut(s)	26, 461, 773
BaeI	ACNNNNGTAYC	2 cut(s)	939, 972
BamHI	GGATCC	1 cut(s)	19
BanI	GGYRCC	1 cut(s)	947
BbsI	GAAGAC	1 cut(s)	38
BbvI	GCAGC	6 cut(s)	175, 213, 406, 430, 434, 973
BccI	CCATC	2 cut(s)	1072, 1076
BceAI	ACGGC	3 cut(s)	58, 168, 619
BcgI	CGANNNNNNTGC	4 cut(s)	57, 91, 401, 435
BciT130I	CCWGG	1 cut(s)	465
BcnI	CCSGG	1 cut(s)	24
BcoDI	GTCTC	3 cut(s)	961, 1117, 1164
BfaI	CTAG	2 cut(s)	426, 621
BfmI	CTRYAG	1 cut(s)	420
BglII	AGATCT	1 cut(s)	782
BisI	GCNGC	9 cut(s)	43, 46, 49, 189, 202, 420, 423, 444, 987
BlsI	GCNGC	9 cut(s)	44, 47, 50, 190, 203, 421, 424, 445, 988
BmcAI	AGTACT	2 cut(s)	274, 665
Bme1390I	CCNGG	2 cut(s)	24, 465
Bme18I	GGWCC	3 cut(s)	26, 461, 773
BmgT120I	GGNCC	4 cut(s)	26, 399, 461, 773
BmiI	GGNNCC	8 cut(s)	21, 400, 462, 633, 774, 775, 949, 1188
BmrFI	CCNGG	2 cut(s)	24, 465
BmsI	GCATC	8 cut(s)	165, 174, 507, 565, 894, 927, 978, 1022
BpiI	GAAGAC	1 cut(s)	38
BpuEI	CTTGAG	1 cut(s)	574
BpuMI	CCSGG	1 cut(s)	24
BsaHI	GRCGYC	1 cut(s)	5
BsaJI	CCNNGG	4 cut(s)	15, 214, 500, 1229
Bsc4I	CCNNNNNNNGG	2 cut(s)	914, 1078
Bse1I	ACTGG	2 cut(s)	370, 805
BseBI	CCWGG	1 cut(s)	465
BseDI	CCNNGG	4 cut(s)	15, 214, 500, 1229
BseGI	GGATG	3 cut(s)	152, 969, 1068
BseLI	CCNNNNNNNGG	2 cut(s)	914, 1078
BseMII	CTCAG	1 cut(s)	651
BseNI	ACTGG	2 cut(s)	370, 805
BseXI	GCAGC	6 cut(s)	175, 213, 406, 430, 434, 973
BsgI	GTGCAG	1 cut(s)	87
BshFI	GGCC	2 cut(s)	401, 615
BshNI	GGYRCC	1 cut(s)	947
BsiSI	CCGG	1 cut(s)	24
BslFI	GGGAC	1 cut(s)	786
BslI	CCNNNNNNNGG	2 cut(s)	914, 1078
BsmAI	GTCTC	3 cut(s)	961, 1117, 1164
BsmFI	GGGAC	1 cut(s)	786
BsmI	GAATGC	1 cut(s)	529
BsnI	GGCC	2 cut(s)	401, 615
Bsp1407I	TGTACA	1 cut(s)	111
Bsp143I	GATC	7 cut(s)	19, 97, 436, 505, 656, 691, 782
BspACI	CCGC	5 cut(s)	42, 45, 48, 57, 83
BspANI	GGCC	2 cut(s)	401, 615
BspCNI	CTCAG	1 cut(s)	652
BspHI	TCATGA	1 cut(s)	1114
BspLI	GGNNCC	8 cut(s)	21, 400, 462, 633, 774, 775, 949, 1188
BspMAI	CTGCAG	1 cut(s)	424
BspPI	GGATC	5 cut(s)	14, 27, 513, 664, 686
BspT107I	GGYRCC	1 cut(s)	947
BsrGI	TGTACA	1 cut(s)	111
BsrI	ACTGG	2 cut(s)	370, 805
BssECI	CCNNGG	4 cut(s)	15, 214, 500, 1229
BssMI	GATC	7 cut(s)	19, 97, 436, 505, 656, 691, 782
BssNI	GRCGYC	1 cut(s)	5
BssT1I	CCWWGG	2 cut(s)	500, 1229
Bst2UI	CCWGG	1 cut(s)	465
Bst4CI	ACNGT	1 cut(s)	215
Bst6I	CTCTTC	3 cut(s)	408, 507, 566
BstACI	GRCGYC	1 cut(s)	5
BstAUI	TGTACA	1 cut(s)	111
BstC8I	GCNNGC	3 cut(s)	94, 309, 334
BstDEI	CTNAG	2 cut(s)	660, 1127
BstDSI	CCRYGG	1 cut(s)	214
BstF5I	GGATG	3 cut(s)	152, 969, 1068
BstHHI	GCGC	2 cut(s)	165, 348
BstKTI	GATC	7 cut(s)	22, 100, 439, 508, 659, 694, 785
BstMAI	GTCTC	3 cut(s)	961, 1117, 1164
BstMBI	GATC	7 cut(s)	19, 97, 436, 505, 656, 691, 782
BstMWI	GCNNNNNNNGC	4 cut(s)	48, 54, 89, 428
BstNI	CCWGG	1 cut(s)	465
BstNSI	RCATGY	1 cut(s)	336
BstSCI	CCNGG	2 cut(s)	22, 463
BstSFI	CTRYAG	1 cut(s)	420
BstV1I	GCAGC	6 cut(s)	175, 213, 406, 430, 434, 973
BstV2I	GAAGAC	1 cut(s)	38
BstX2I	RGATCY	4 cut(s)	19, 505, 656, 782
BstYI	RGATCY	4 cut(s)	19, 505, 656, 782
BsuRI	GGCC	2 cut(s)	401, 615
BtgI	CCRYGG	1 cut(s)	214
BtsCI	GGATG	3 cut(s)	152, 969, 1068
BtsI	GCAGTG	2 cut(s)	58, 586
BtsIMutI	CAGTG	2 cut(s)	58, 586
Cac8I	GCNNGC	3 cut(s)	94, 309, 334
CciI	TCATGA	1 cut(s)	1114
CfoI	GCGC	2 cut(s)	165, 348
Cfr13I	GGNCC	4 cut(s)	26, 399, 461, 773
CpoI	CGGWCCG	1 cut(s)	26
Csp6I	GTAC	6 cut(s)	112, 150, 273, 664, 948, 1202
CspI	CGGWCCG	1 cut(s)	26
CviAII	CATG	6 cut(s)	333, 349, 805, 926, 964, 1115
CviQI	GTAC	6 cut(s)	112, 150, 273, 664, 948, 1202
DdeI	CTNAG	2 cut(s)	660, 1127
DpnI	GATC	7 cut(s)	21, 99, 438, 507, 658, 693, 784
DpnII	GATC	7 cut(s)	19, 97, 436, 505, 656, 691, 782
Eam1104I	CTCTTC	3 cut(s)	408, 507, 566
EarI	CTCTTC	3 cut(s)	408, 507, 566
Eco130I	CCWWGG	2 cut(s)	500, 1229
Eco47I	GGWCC	3 cut(s)	26, 461, 773
EcoO109I	RGGNCCY	3 cut(s)	399, 461, 773
EcoRII	CCWGG	1 cut(s)	463
EcoT14I	CCWWGG	2 cut(s)	500, 1229
ErhI	CCWWGG	2 cut(s)	500, 1229
FaeI	CATG	6 cut(s)	336, 352, 808, 929, 967, 1118
FaqI	GGGAC	1 cut(s)	786
FatI	CATG	6 cut(s)	332, 348, 804, 925, 963, 1114
Fnu4HI	GCNGC	9 cut(s)	43, 46, 49, 189, 202, 420, 423, 444, 987
FokI	GGATG	3 cut(s)	159, 956, 1055
Fsp4HI	GCNGC	9 cut(s)	43, 46, 49, 189, 202, 420, 423, 444, 987
FspBI	CTAG	2 cut(s)	426, 621
GlaI	GCGC	2 cut(s)	164, 347
GluI	GCNGC	9 cut(s)	43, 46, 49, 189, 202, 420, 423, 444, 987
HaeIII	GGCC	2 cut(s)	401, 615
HapII	CCGG	1 cut(s)	24
HhaI	GCGC	2 cut(s)	165, 348
Hin1I	GRCGYC	1 cut(s)	5
Hin1II	CATG	6 cut(s)	336, 352, 808, 929, 967, 1118
Hin6I	GCGC	2 cut(s)	163, 346
HinP1I	GCGC	2 cut(s)	163, 346
HinfI	GANTC	4 cut(s)	219, 280, 879, 954
HpaII	CCGG	1 cut(s)	24
HphI	GGTGA	2 cut(s)	581, 806
Hpy166II	GTNNAC	4 cut(s)	112, 237, 375, 710
Hpy188I	TCNGA	8 cut(s)	19, 30, 79, 285, 566, 661, 817, 1212
Hpy188III	TCNNGA	3 cut(s)	509, 591, 1115
Hpy8I	GTNNAC	4 cut(s)	112, 237, 375, 710
Hpy99I	CGWCG	4 cut(s)	10, 13, 79, 413
HpyAV	CCTTC	2 cut(s)	292, 1201
HpyCH4III	ACNGT	1 cut(s)	215
HpyCH4IV	ACGT	2 cut(s)	353, 831
HpyF10VI	GCNNNNNNNGC	4 cut(s)	48, 54, 89, 428
HpyF3I	CTNAG	2 cut(s)	660, 1127
HpySE526I	ACGT	2 cut(s)	353, 831
Hsp92I	GRCGYC	1 cut(s)	5
Hsp92II	CATG	6 cut(s)	336, 352, 808, 929, 967, 1118
HspAI	GCGC	2 cut(s)	163, 346
KflI	GGGWCCC	1 cut(s)	773
KpnI	GGTACC	1 cut(s)	951
Kzo9I	GATC	7 cut(s)	19, 97, 436, 505, 656, 691, 782
LmnI	GCTCC	4 cut(s)	209, 631, 719, 1192
Lsp1109I	GCAGC	6 cut(s)	175, 213, 406, 430, 434, 973
LweI	GCATC	8 cut(s)	165, 174, 507, 565, 894, 927, 978, 1022
MaeI	CTAG	2 cut(s)	426, 621
MaeII	ACGT	2 cut(s)	353, 831
MaeIII	GTNAC	3 cut(s)	220, 487, 755
MalI	GATC	7 cut(s)	21, 99, 438, 507, 658, 693, 784
MboI	GATC	7 cut(s)	19, 97, 436, 505, 656, 691, 782
MboII	GAAGA	6 cut(s)	43, 145, 425, 524, 553, 830
MflI	RGATCY	4 cut(s)	19, 505, 656, 782
MluCI	AATT	3 cut(s)	389, 478, 597
MlyI	GAGTC	2 cut(s)	228, 963
MmeI	TCCRAC	2 cut(s)	57, 820
MseI	TTAA	1 cut(s)	861
MslI	CAYNNNNRTG	2 cut(s)	337, 871
MspA1I	CMGCKG	1 cut(s)	986
MspI	CCGG	1 cut(s)	24
MspR9I	CCNGG	2 cut(s)	24, 465
Mva1269I	GAATGC	1 cut(s)	529
MvaI	CCWGG	1 cut(s)	465
MwoI	GCNNNNNNNGC	4 cut(s)	48, 54, 89, 428
NciI	CCSGG	1 cut(s)	24
NdeII	GATC	7 cut(s)	19, 97, 436, 505, 656, 691, 782
NlaIII	CATG	6 cut(s)	336, 352, 808, 929, 967, 1118
NlaIV	GGNNCC	8 cut(s)	21, 400, 462, 633, 774, 775, 949, 1188
NmeAIII	GCCGAG	1 cut(s)	205
NmuCI	GTSAC	1 cut(s)	220
NspI	RCATGY	1 cut(s)	336
PaeI	GCATGC	1 cut(s)	336
PagI	TCATGA	1 cut(s)	1114
PctI	GAATGC	1 cut(s)	529
PfeI	GAWTC	2 cut(s)	280, 879
PflMI	CCANNNNNTGG	1 cut(s)	1078
PkrI	GCNGC	9 cut(s)	44, 47, 50, 190, 203, 421, 424, 445, 988
PleI	GAGTC	2 cut(s)	227, 962
PpsI	GAGTC	2 cut(s)	227, 962
PpuMI	RGGWCCY	2 cut(s)	461, 773
Psp1406I	AACGTT	1 cut(s)	831
Psp5II	RGGWCCY	2 cut(s)	461, 773
Psp6I	CCWGG	1 cut(s)	463
PspGI	CCWGG	1 cut(s)	463
PspN4I	GGNNCC	8 cut(s)	21, 400, 462, 633, 774, 775, 949, 1188
PspPI	GGNCC	4 cut(s)	26, 399, 461, 773
PspPPI	RGGWCCY	2 cut(s)	461, 773
PstI	CTGCAG	1 cut(s)	424
PsuI	RGATCY	4 cut(s)	19, 505, 656, 782
PvuII	CAGCTG	1 cut(s)	986
RsaI	GTAC	6 cut(s)	113, 151, 274, 665, 949, 1203
RsaNI	GTAC	6 cut(s)	112, 150, 273, 664, 948, 1202
RseI	CAYNNNNRTG	2 cut(s)	337, 871
Rsr2I	CGGWCCG	1 cut(s)	26
RsrII	CGGWCCG	1 cut(s)	26
SaqAI	TTAA	1 cut(s)	861
SatI	GCNGC	9 cut(s)	43, 46, 49, 189, 202, 420, 423, 444, 987
Sau3AI	GATC	7 cut(s)	19, 97, 436, 505, 656, 691, 782
Sau96I	GGNCC	4 cut(s)	26, 399, 461, 773
ScaI	AGTACT	2 cut(s)	274, 665
SchI	GAGTC	2 cut(s)	228, 963
ScrFI	CCNGG	2 cut(s)	24, 465
SfaNI	GCATC	8 cut(s)	165, 174, 507, 565, 894, 927, 978, 1022
SfcI	CTRYAG	1 cut(s)	420
SinI	GGWCC	3 cut(s)	26, 461, 773
SmiMI	CAYNNNNRTG	2 cut(s)	337, 871
SmlI	CTYRAG	1 cut(s)	589
SmoI	CTYRAG	1 cut(s)	589
SphI	GCATGC	1 cut(s)	336
Sse9I	AATT	3 cut(s)	389, 478, 597
SsiI	CCGC	5 cut(s)	42, 45, 48, 57, 83
SspI	AATATT	1 cut(s)	455
SspMI	CTAG	2 cut(s)	426, 621
StyD4I	CCNGG	2 cut(s)	22, 463
StyI	CCWWGG	2 cut(s)	500, 1229
TaaI	ACNGT	1 cut(s)	215
TaiI	ACGT	2 cut(s)	356, 834
TaqI	TCGA	3 cut(s)	131, 358, 669
TaqII	GACCGA	1 cut(s)	50
TasI	AATT	3 cut(s)	389, 478, 597
TatI	WGTACW	3 cut(s)	111, 272, 663
TauI	GCSGC	3 cut(s)	45, 48, 51
TfiI	GAWTC	2 cut(s)	280, 879
Tru1I	TTAA	1 cut(s)	861
Tru9I	TTAA	1 cut(s)	861
TscAI	CASTG	2 cut(s)	58, 586
TseFI	GTSAC	1 cut(s)	220
TseI	GCWGC	6 cut(s)	188, 201, 419, 422, 443, 986
Tsp45I	GTSAC	1 cut(s)	220
TspDTI	ATGAA	2 cut(s)	821, 1068
TspGWI	ACGGA	2 cut(s)	171, 401
TspRI	CASTG	2 cut(s)	58, 586
Van91I	CCANNNNNTGG	1 cut(s)	1078
VpaK11BI	GGWCC	3 cut(s)	26, 461, 773
XapI	RAATTY	2 cut(s)	389, 597
XceI	RCATGY	1 cut(s)	336
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1075
XspI	CTAG	2 cut(s)	426, 621
ZrmI	AGTACT	2 cut(s)	274, 665

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.