Rmu_co8231061.1_g000001

AP2-like ethylene-responsive transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8231061.1
OG0006364
Physical Location & Seq
Reverse (-)
1 .. 708
708 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8231061.1_g000001.1.cds

Sequence Viewer

Length: 325 bp
atggcttcgtcgtcctcggatcctggtccgaagaccgaaagcggaagcggcagcggcggcggagcggaggcctcggaagcggtggcggcggctgcggcggcggtggcgaccgatcagcaattgctttacagagggctgaagaaagcgaagaaagagagaggttgcacggccaaagagcgcatcagcaaaatgcctccctgtgccgctggaaaacgcagctccatttaccgtggagtcactcggcataggtggacgggtcgttacgaagctcatctctgggataaaagtacctggaaccagaaccagaataagaagggaaagcaag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
AP2

Protein Analysis

108

Amino Acids

11.54

Weight (kDa)

10.07

Isoelectric Point (pI)

42.54

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 65
AclWI GGATC 2 cut(s) 14, 27
AcoI YGGCCR 1 cut(s) 168
AcuI CTGAAG 1 cut(s) 158
AfaI GTAC 1 cut(s) 289
AjnI CCWGG 2 cut(s) 22, 290
AluBI AGCT 2 cut(s) 219, 269
AluI AGCT 2 cut(s) 219, 269
AlwI GGATC 2 cut(s) 14, 27
AoxI GGCC 2 cut(s) 69, 168
ApeKI GCWGC 3 cut(s) 51, 92, 216
AspLEI GCGC 1 cut(s) 180
AspS9I GGNCC 1 cut(s) 26
AvaII GGWCC 1 cut(s) 26
BamHI GGATCC 1 cut(s) 19
BbsI GAAGAC 1 cut(s) 38
BbvI GCAGC 3 cut(s) 63, 79, 228
BceAI ACGGC 1 cut(s) 183
BciT130I CCWGG 2 cut(s) 24, 292
Bme1390I CCNGG 2 cut(s) 24, 292
Bme18I GGWCC 1 cut(s) 26
BmgT120I GGNCC 1 cut(s) 26
BmiI GGNNCC 2 cut(s) 21, 296
BmrFI CCNGG 2 cut(s) 24, 292
BmsI GCATC 1 cut(s) 189
BpiI GAAGAC 1 cut(s) 38
BsaJI CCNNGG 3 cut(s) 15, 72, 229
BseBI CCWGG 2 cut(s) 24, 292
BseDI CCNNGG 3 cut(s) 15, 72, 229
BseXI GCAGC 3 cut(s) 63, 79, 228
Bsh1285I CGRYCG 1 cut(s) 111
BshFI GGCC 2 cut(s) 71, 170
BsiEI CGRYCG 1 cut(s) 111
BsnI GGCC 2 cut(s) 71, 170
Bsp143I GATC 2 cut(s) 19, 112
BspANI GGCC 2 cut(s) 71, 170
BspLI GGNNCC 2 cut(s) 21, 296
BspPI GGATC 2 cut(s) 14, 27
BsrBI CCGCTC 1 cut(s) 65
BssECI CCNNGG 3 cut(s) 15, 72, 229
BssMI GATC 2 cut(s) 19, 112
Bst2UI CCWGG 2 cut(s) 24, 292
Bst4CI ACNGT 1 cut(s) 230
BstDSI CCRYGG 1 cut(s) 229
BstHHI GCGC 1 cut(s) 180
BstKTI GATC 2 cut(s) 22, 115
BstMBI GATC 2 cut(s) 19, 112
BstMCI CGRYCG 1 cut(s) 111
BstMWI GCNNNNNNNGC 9 cut(s) 48, 54, 57, 77, 86, 92, 95, 98, 104
BstNI CCWGG 2 cut(s) 24, 292
BstSCI CCNGG 2 cut(s) 22, 290
BstV1I GCAGC 3 cut(s) 63, 79, 228
BstV2I GAAGAC 1 cut(s) 38
BstX2I RGATCY 1 cut(s) 19
BstYI RGATCY 1 cut(s) 19
BsuRI GGCC 2 cut(s) 71, 170
BtgI CCRYGG 1 cut(s) 229
CfoI GCGC 1 cut(s) 180
Cfr13I GGNCC 1 cut(s) 26
Csp6I GTAC 1 cut(s) 288
CviJI RGCY 7 cut(s) 5, 71, 92, 136, 170, 219, 269
CviKI_1 RGCY 7 cut(s) 5, 71, 92, 136, 170, 219, 269
CviQI GTAC 1 cut(s) 288
DpnI GATC 2 cut(s) 21, 114
DpnII GATC 2 cut(s) 19, 112
EaeI YGGCCR 1 cut(s) 168
EciI GGCGGA 1 cut(s) 75
Eco147I AGGCCT 1 cut(s) 71
Eco47I GGWCC 1 cut(s) 26
Eco57I CTGAAG 1 cut(s) 158
EcoRII CCWGG 2 cut(s) 22, 290
FaiI YATR 1 cut(s) 246
GlaI GCGC 1 cut(s) 179
HaeIII GGCC 2 cut(s) 71, 170
HhaI GCGC 1 cut(s) 180
Hin6I GCGC 1 cut(s) 178
HinP1I GCGC 1 cut(s) 178
HinfI GANTC 1 cut(s) 234
Hpy166II GTNNAC 1 cut(s) 252
Hpy188I TCNGA 3 cut(s) 19, 30, 76
Hpy8I GTNNAC 1 cut(s) 252
Hpy99I CGWCG 1 cut(s) 13
HpyAV CCTTC 1 cut(s) 307
HpyCH4III ACNGT 1 cut(s) 230
HpyCH4V TGCA 1 cut(s) 165
HpyF10VI GCNNNNNNNGC 9 cut(s) 48, 54, 57, 77, 86, 92, 95, 98, 104
HspAI GCGC 1 cut(s) 178
Kzo9I GATC 2 cut(s) 19, 112
LmnI GCTCC 2 cut(s) 62, 224
LpnPI CCDG 9 cut(s) 9, 36, 192, 211, 262, 277, 304, 311, 317
Lsp1109I GCAGC 3 cut(s) 63, 79, 228
LweI GCATC 1 cut(s) 189
MaeIII GTNAC 2 cut(s) 235, 260
MalI GATC 2 cut(s) 21, 114
MbiI CCGCTC 1 cut(s) 65
MboI GATC 2 cut(s) 19, 112
MboII GAAGA 3 cut(s) 43, 151, 160
MfeI CAATTG 1 cut(s) 119
MflI RGATCY 1 cut(s) 19
MluCI AATT 1 cut(s) 119
MlyI GAGTC 1 cut(s) 243
MnlI CCTC 6 cut(s) 25, 61, 82, 125, 152, 204
MspA1I CMGCKG 2 cut(s) 54, 206
MspR9I CCNGG 2 cut(s) 24, 292
MunI CAATTG 1 cut(s) 119
MvaI CCWGG 2 cut(s) 24, 292
MwoI GCNNNNNNNGC 9 cut(s) 48, 54, 57, 77, 86, 92, 95, 98, 104
NdeII GATC 2 cut(s) 19, 112
NlaIV GGNNCC 2 cut(s) 21, 296
NmeAIII GCCGAG 1 cut(s) 220
NmuCI GTSAC 1 cut(s) 235
PceI AGGCCT 1 cut(s) 71
PleI GAGTC 1 cut(s) 242
PpsI GAGTC 1 cut(s) 242
Psp6I CCWGG 2 cut(s) 22, 290
PspGI CCWGG 2 cut(s) 22, 290
PspN4I GGNNCC 2 cut(s) 21, 296
PspPI GGNCC 1 cut(s) 26
PsuI RGATCY 1 cut(s) 19
RsaI GTAC 1 cut(s) 289
RsaNI GTAC 1 cut(s) 288
Sau3AI GATC 2 cut(s) 19, 112
Sau96I GGNCC 1 cut(s) 26
SchI GAGTC 1 cut(s) 243
ScrFI CCNGG 2 cut(s) 24, 292
SetI ASST 5 cut(s) 163, 221, 251, 271, 293
SfaNI GCATC 1 cut(s) 189
SinI GGWCC 1 cut(s) 26
Sse9I AATT 1 cut(s) 119
SseBI AGGCCT 1 cut(s) 71
StuI AGGCCT 1 cut(s) 71
StyD4I CCNGG 2 cut(s) 22, 290
TaaI ACNGT 1 cut(s) 230
TaqII GACCGA 2 cut(s) 50, 125
TasI AATT 1 cut(s) 119
TauI GCSGC 8 cut(s) 51, 57, 60, 89, 92, 98, 101, 206
TseFI GTSAC 1 cut(s) 235
TseI GCWGC 3 cut(s) 51, 92, 216
Tsp45I GTSAC 1 cut(s) 235
VpaK11BI GGWCC 1 cut(s) 26
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.