Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006069.1

Orthogroup ID

OG0006364

Physical Location & Seq

Genomic Coordinates Forward (+)

34161 .. 35748

Gene Structure 1588 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0006069.1_g000007.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 660 bp

atggcttcgtcgtcctcggatcctggtccgaagaccgaaagcggaagcggcagcggcggcggagcggaggcctcggaagcggcggcggcggctgcggcggcggtggcgaccgatcagcaattgctttacagagggctgaagaaagcgaagaaagagagaggttgcacggccaaagagcgcatcagcaaaatgcctccctgtgccgctggaaaacgcagctccatttaccgtggagtcactcggcataggtggacgggtcgttacgaagctcatctctgggataaaagtacctggaaccagaaccagaataagaagggaaagcaagtttacttgggcgcgtatgatgatgaagaggctgcagccagagcttatgatcttgctgccttgaaatattggggccctggcactctgattaatttccctgttactgactacacaagagatctcgaagagatgcagaatgtgtcaagggaggaatatcttgcatctcttcgcaggtgtggatatctaagaacatatttgaatctgatagctgtcacgttgcttatactagatttttctctggcaggaagagcagtggcttctctagaggaatgtctaaatatcgcgcgctctcaaggtatggtttacatttatacgttacttgtatgcatcatataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

219

Amino Acids

24.03

Weight (kDa)

9.02

Isoelectric Point (pI)

43.38

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006364)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G41710 AT2G41710 AT2G41710 AT2G41710
fragaria_vesca	FvH4_6g24090 FvH4_6g24090 FvH4_6g24090
malus_domestica	MD12G1075200.v1.1 MD12G1079800.v1.1 MD14G1076000.v1.1
prunus_persica	Prupe.7G058300_v2.0.a1
pyrus_communis	pycom12g06470 pycom14g06450
rosa_chinensis	RchiOBHm_Chr3g0482661 RchiOBHm_Chr6g0258101
rosa_laevigata	RLG00000023334
rosa_multiflora	Rmu_co8231061.1_g000001 Rmu_sc0006069.1_g000007 Rmu_sc0011850.1_g000001 Rmu_sc0015893.1_g000013
rosa_roxburghii	Rroxscaffold_1G00037300 Rroxscaffold_6G00399050
rosa_rugosa	Rorug03G0197800
rosa_samantha	Rh3AG249100 Rh3BG284400 Rh3CG282300
rosa_wichuraiana	Rw3G022500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	486
Acc36I	ACCTGC	1 cut(s)	486
AccBSI	CCGCTC	1 cut(s)	65
AccII	CGCG	3 cut(s)	338, 608, 610
AclWI	GGATC	2 cut(s)	14, 27
AcoI	YGGCCR	1 cut(s)	168
AcuI	CTGAAG	1 cut(s)	158
AfaI	GTAC	1 cut(s)	289
AgsI	TTSAA	2 cut(s)	388, 523
AjnI	CCWGG	3 cut(s)	22, 290, 400
AluBI	AGCT	4 cut(s)	219, 269, 368, 533
AluI	AGCT	4 cut(s)	219, 269, 368, 533
AlwI	GGATC	2 cut(s)	14, 27
AoxI	GGCC	3 cut(s)	69, 168, 397
ApaI	GGGCCC	1 cut(s)	401
ApeKI	GCWGC	6 cut(s)	51, 92, 216, 356, 359, 380
AseI	ATTAAT	1 cut(s)	414
AspLEI	GCGC	4 cut(s)	180, 338, 610, 612
AspS9I	GGNCC	3 cut(s)	26, 397, 398
AvaII	GGWCC	1 cut(s)	26
BaeGI	GKGCMC	1 cut(s)	401
BamHI	GGATCC	1 cut(s)	19
BanII	GRGCYC	1 cut(s)	401
BbsI	GAAGAC	1 cut(s)	38
BbvI	GCAGC	6 cut(s)	63, 79, 228, 343, 367, 371
BceAI	ACGGC	1 cut(s)	183
BciT130I	CCWGG	3 cut(s)	24, 292, 402
BfaI	CTAG	2 cut(s)	551, 587
BfmI	CTRYAG	1 cut(s)	357
BfuAI	ACCTGC	1 cut(s)	486
BglII	AGATCT	1 cut(s)	442
Bme1390I	CCNGG	3 cut(s)	24, 292, 402
Bme18I	GGWCC	1 cut(s)	26
BmgT120I	GGNCC	3 cut(s)	26, 397, 398
BmiI	GGNNCC	4 cut(s)	21, 296, 398, 399
BmrFI	CCNGG	3 cut(s)	24, 292, 402
BmsI	GCATC	3 cut(s)	189, 444, 494
BpiI	GAAGAC	1 cut(s)	38
BpuEI	CTTGAG	1 cut(s)	600
BsaJI	CCNNGG	4 cut(s)	15, 72, 229, 400
BseBI	CCWGG	3 cut(s)	24, 292, 402
BseDI	CCNNGG	4 cut(s)	15, 72, 229, 400
BsePI	GCGCGC	1 cut(s)	608
BseSI	GKGCMC	1 cut(s)	401
BseXI	GCAGC	6 cut(s)	63, 79, 228, 343, 367, 371
Bsh1236I	CGCG	3 cut(s)	338, 608, 610
Bsh1285I	CGRYCG	1 cut(s)	111
BshFI	GGCC	3 cut(s)	71, 170, 399
BsiEI	CGRYCG	1 cut(s)	111
BsnI	GGCC	3 cut(s)	71, 170, 399
Bsp120I	GGGCCC	1 cut(s)	397
Bsp1286I	GDGCHC	1 cut(s)	401
Bsp143I	GATC	4 cut(s)	19, 112, 373, 442
BspANI	GGCC	3 cut(s)	71, 170, 399
BspFNI	CGCG	3 cut(s)	338, 608, 610
BspLI	GGNNCC	4 cut(s)	21, 296, 398, 399
BspMAI	CTGCAG	1 cut(s)	361
BspMI	ACCTGC	1 cut(s)	486
BspPI	GGATC	2 cut(s)	14, 27
BspQI	GCTCTTC	1 cut(s)	565
BsrBI	CCGCTC	1 cut(s)	65
BssECI	CCNNGG	4 cut(s)	15, 72, 229, 400
BssHII	GCGCGC	1 cut(s)	608
BssMI	GATC	4 cut(s)	19, 112, 373, 442
Bst2UI	CCWGG	3 cut(s)	24, 292, 402
Bst4CI	ACNGT	1 cut(s)	230
Bst6I	CTCTTC	4 cut(s)	345, 444, 495, 565
BstC8I	GCNNGC	1 cut(s)	610
BstDEI	CTNAG	1 cut(s)	509
BstDSI	CCRYGG	1 cut(s)	229
BstFNI	CGCG	3 cut(s)	338, 608, 610
BstHHI	GCGC	4 cut(s)	180, 338, 610, 612
BstKTI	GATC	4 cut(s)	22, 115, 376, 445
BstMBI	GATC	4 cut(s)	19, 112, 373, 442
BstMCI	CGRYCG	1 cut(s)	111
BstNI	CCWGG	3 cut(s)	24, 292, 402
BstSCI	CCNGG	3 cut(s)	22, 290, 400
BstSFI	CTRYAG	1 cut(s)	357
BstSLI	GKGCMC	1 cut(s)	401
BstUI	CGCG	3 cut(s)	338, 608, 610
BstV1I	GCAGC	6 cut(s)	63, 79, 228, 343, 367, 371
BstV2I	GAAGAC	1 cut(s)	38
BstX2I	RGATCY	2 cut(s)	19, 442
BstYI	RGATCY	2 cut(s)	19, 442
BsuRI	GGCC	3 cut(s)	71, 170, 399
BtgI	CCRYGG	1 cut(s)	229
BtsI	GCAGTG	1 cut(s)	582
BtsIMutI	CAGTG	1 cut(s)	582
BveI	ACCTGC	1 cut(s)	486
Cac8I	GCNNGC	1 cut(s)	610
CfoI	GCGC	4 cut(s)	180, 338, 610, 612
Cfr13I	GGNCC	3 cut(s)	26, 397, 398
Csp6I	GTAC	1 cut(s)	288
CviQI	GTAC	1 cut(s)	288
DdeI	CTNAG	1 cut(s)	509
DpnI	GATC	4 cut(s)	21, 114, 375, 444
DpnII	GATC	4 cut(s)	19, 112, 373, 442
EaeI	YGGCCR	1 cut(s)	168
Eam1104I	CTCTTC	4 cut(s)	345, 444, 495, 565
EarI	CTCTTC	4 cut(s)	345, 444, 495, 565
EciI	GGCGGA	1 cut(s)	75
Eco147I	AGGCCT	1 cut(s)	71
Eco24I	GRGCYC	1 cut(s)	401
Eco32I	GATATC	1 cut(s)	506
Eco47I	GGWCC	1 cut(s)	26
Eco57I	CTGAAG	1 cut(s)	158
EcoO109I	RGGNCCY	2 cut(s)	397, 398
EcoRII	CCWGG	3 cut(s)	22, 290, 400
EcoRV	GATATC	1 cut(s)	506
EcoT22I	ATGCAT	1 cut(s)	653
EcoT38I	GRGCYC	1 cut(s)	401
FriOI	GRGCYC	1 cut(s)	401
FspBI	CTAG	2 cut(s)	551, 587
GlaI	GCGC	4 cut(s)	179, 337, 609, 611
HaeIII	GGCC	3 cut(s)	71, 170, 399
HhaI	GCGC	4 cut(s)	180, 338, 610, 612
Hin6I	GCGC	4 cut(s)	178, 336, 608, 610
HinP1I	GCGC	4 cut(s)	178, 336, 608, 610
HinfI	GANTC	2 cut(s)	234, 523
Hpy166II	GTNNAC	3 cut(s)	252, 328, 628
Hpy188I	TCNGA	5 cut(s)	19, 30, 76, 411, 528
Hpy188III	TCNNGA	2 cut(s)	446, 587
Hpy8I	GTNNAC	3 cut(s)	252, 328, 628
Hpy99I	CGWCG	1 cut(s)	13
HpyAV	CCTTC	1 cut(s)	307
HpyCH4III	ACNGT	1 cut(s)	230
HpyCH4IV	ACGT	2 cut(s)	539, 638
HpyCH4V	TGCA	5 cut(s)	165, 359, 457, 485, 651
HpyF3I	CTNAG	1 cut(s)	509
HpySE526I	ACGT	2 cut(s)	539, 638
HspAI	GCGC	4 cut(s)	178, 336, 608, 610
Kzo9I	GATC	4 cut(s)	19, 112, 373, 442
LguI	GCTCTTC	1 cut(s)	565
LmnI	GCTCC	2 cut(s)	62, 224
Lsp1109I	GCAGC	6 cut(s)	63, 79, 228, 343, 367, 371
LweI	GCATC	3 cut(s)	189, 444, 494
MaeI	CTAG	2 cut(s)	551, 587
MaeII	ACGT	2 cut(s)	539, 638
MaeIII	GTNAC	5 cut(s)	235, 260, 424, 535, 639
MalI	GATC	4 cut(s)	21, 114, 375, 444
MbiI	CCGCTC	1 cut(s)	65
MboI	GATC	4 cut(s)	19, 112, 373, 442
MboII	GAAGA	7 cut(s)	43, 151, 160, 362, 461, 482, 582
MfeI	CAATTG	1 cut(s)	119
MflI	RGATCY	2 cut(s)	19, 442
MhlI	GDGCHC	1 cut(s)	401
MluCI	AATT	2 cut(s)	119, 415
MlyI	GAGTC	1 cut(s)	243
MnlI	CCTC	9 cut(s)	25, 61, 82, 125, 152, 204, 346, 466, 583
Mph1103I	ATGCAT	1 cut(s)	653
MseI	TTAA	1 cut(s)	414
MspA1I	CMGCKG	2 cut(s)	54, 206
MspR9I	CCNGG	3 cut(s)	24, 292, 402
MunI	CAATTG	1 cut(s)	119
MvaI	CCWGG	3 cut(s)	24, 292, 402
MvnI	CGCG	3 cut(s)	338, 608, 610
NdeII	GATC	4 cut(s)	19, 112, 373, 442
NlaIV	GGNNCC	4 cut(s)	21, 296, 398, 399
NmeAIII	GCCGAG	1 cut(s)	220
NmuCI	GTSAC	2 cut(s)	235, 535
NsiI	ATGCAT	1 cut(s)	653
PaqCI	CACCTGC	1 cut(s)	486
PauI	GCGCGC	1 cut(s)	608
PceI	AGGCCT	1 cut(s)	71
PciSI	GCTCTTC	1 cut(s)	565
PfeI	GAWTC	1 cut(s)	523
PleI	GAGTC	1 cut(s)	242
PpsI	GAGTC	1 cut(s)	242
PshBI	ATTAAT	1 cut(s)	414
Psp6I	CCWGG	3 cut(s)	22, 290, 400
PspGI	CCWGG	3 cut(s)	22, 290, 400
PspN4I	GGNNCC	4 cut(s)	21, 296, 398, 399
PspOMI	GGGCCC	1 cut(s)	397
PspPI	GGNCC	3 cut(s)	26, 397, 398
PstI	CTGCAG	1 cut(s)	361
PsuI	RGATCY	2 cut(s)	19, 442
PteI	GCGCGC	1 cut(s)	608
RsaI	GTAC	1 cut(s)	289
RsaNI	GTAC	1 cut(s)	288
SapI	GCTCTTC	1 cut(s)	565
SaqAI	TTAA	1 cut(s)	414
Sau3AI	GATC	4 cut(s)	19, 112, 373, 442
Sau96I	GGNCC	3 cut(s)	26, 397, 398
SchI	GAGTC	1 cut(s)	243
ScrFI	CCNGG	3 cut(s)	24, 292, 402
SduI	GDGCHC	1 cut(s)	401
SfaNI	GCATC	3 cut(s)	189, 444, 494
SfcI	CTRYAG	1 cut(s)	357
SinI	GGWCC	1 cut(s)	26
SmlI	CTYRAG	1 cut(s)	615
SmoI	CTYRAG	1 cut(s)	615
Sse9I	AATT	2 cut(s)	119, 415
SseBI	AGGCCT	1 cut(s)	71
SspI	AATATT	1 cut(s)	392
SspMI	CTAG	2 cut(s)	551, 587
StuI	AGGCCT	1 cut(s)	71
StyD4I	CCNGG	3 cut(s)	22, 290, 400
TaaI	ACNGT	1 cut(s)	230
TaiI	ACGT	2 cut(s)	542, 641
TaqI	TCGA	1 cut(s)	447
TaqII	GACCGA	2 cut(s)	50, 125
TasI	AATT	2 cut(s)	119, 415
TfiI	GAWTC	1 cut(s)	523
Tru1I	TTAA	1 cut(s)	414
Tru9I	TTAA	1 cut(s)	414
TscAI	CASTG	1 cut(s)	582
TseFI	GTSAC	2 cut(s)	235, 535
TseI	GCWGC	6 cut(s)	51, 92, 216, 356, 359, 380
Tsp45I	GTSAC	2 cut(s)	235, 535
TspDTI	ATGAA	1 cut(s)	363
TspRI	CASTG	1 cut(s)	582
VpaK11BI	GGWCC	1 cut(s)	26
VspI	ATTAAT	1 cut(s)	414
XbaI	TCTAGA	1 cut(s)	586
XspI	CTAG	2 cut(s)	551, 587
Zsp2I	ATGCAT	1 cut(s)	653

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.