Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0006364

Physical Location & Seq

Genomic Coordinates Reverse (-)

54353091 .. 54357400

Gene Structure 4310 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00037300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 438 bp

ATGTATGTTGTAGTGGACACCACTGTGAAGAAGAAGGTTGAGGATATAATGGCCATTGCCACCGGCCACGAGCTAGGAGCAAATTCATTTGATATGCTGTGTTTGTTGGAATGGAAAATGTTGGATAAGTTGAGATTGGAAAGAATATCCTGGAAATCGACCATCCCAAAGGTCCTTTTGGCACAAAGGCATAGATGGACAGGGAGATATGAAGCTCATTTATGGGACAAAAGGTCTTGGCATCCAACAGAAAGGAAGAAGGGAAAGAAAATTTATCTGGAAGAAGCAGTGGCTTTTCAAGTGGTGTATCCAAGTACAGAGGAGTTGCCAGATATTACTTTGCTAGATAAAATTGTGATATATGACGAGGAAAACCAGCAAATTGGGTTGGTTTCAGCAAATTGCAGTAGGCTTCCCAAGTCCTGTTATGAAGATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006109 GO:0006110 GO:0006140 GO:0006355 GO:0006629 GO:0006638 GO:0006639 GO:0006641 GO:0008150 GO:0008152 GO:0008610 GO:0009058 GO:0009743 GO:0009744 GO:0009889 GO:0009891 GO:0009893 GO:0009894 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0019219 GO:0019220 GO:0019222 GO:0019432 GO:0030808 GO:0030811 GO:0031323 GO:0031326 GO:0031329 GO:0034285 GO:0042221 GO:0042325 GO:0043467 GO:0043470 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0045017 GO:0046460 GO:0046463 GO:0046486 GO:0048518 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051174 GO:0051193 GO:0051196 GO:0051252 GO:0060255 GO:0062012 GO:0065007 GO:0071704 GO:0080090 GO:0097159 GO:0140110 GO:1900371 GO:1900542 GO:1901363 GO:1901576 GO:1901700 GO:1901957 GO:1901959 GO:1903506 GO:1903578 GO:2000112 GO:2001141 GO:2001169

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

145

Amino Acids

16.98

Weight (kDa)

6.91

Isoelectric Point (pI)

38.06

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0006364)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G41710 AT2G41710 AT2G41710 AT2G41710
fragaria_vesca	FvH4_6g24090 FvH4_6g24090 FvH4_6g24090
malus_domestica	MD12G1075200.v1.1 MD12G1079800.v1.1 MD14G1076000.v1.1
prunus_persica	Prupe.7G058300_v2.0.a1
pyrus_communis	pycom12g06470 pycom14g06450
rosa_chinensis	RchiOBHm_Chr3g0482661 RchiOBHm_Chr6g0258101
rosa_laevigata	RLG00000023334
rosa_multiflora	Rmu_co8231061.1_g000001 Rmu_sc0006069.1_g000007 Rmu_sc0011850.1_g000001 Rmu_sc0015893.1_g000013
rosa_roxburghii	Rroxscaffold_1G00037300 Rroxscaffold_6G00399050
rosa_rugosa	Rorug03G0197800
rosa_samantha	Rh3AG249100 Rh3BG284400 Rh3CG282300
rosa_wichuraiana	Rw3G022500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcoI	YGGCCR	2 cut(s)	51, 64
AcsI	RAATTY	2 cut(s)	82, 270
AfaI	GTAC	1 cut(s)	316
AgsI	TTSAA	1 cut(s)	299
AhdI	GACNNNNNGTC	1 cut(s)	232
AjnI	CCWGG	1 cut(s)	149
AleI	CACNNNNGTG	1 cut(s)	23
AluBI	AGCT	2 cut(s)	73, 215
AluI	AGCT	2 cut(s)	73, 215
AoxI	GGCC	2 cut(s)	51, 64
ApoI	RAATTY	2 cut(s)	82, 270
AspS9I	GGNCC	1 cut(s)	172
AvaII	GGWCC	1 cut(s)	172
BalI	TGGCCA	1 cut(s)	53
BauI	CACGAG	1 cut(s)	68
BccI	CCATC	2 cut(s)	170, 189
BciT130I	CCWGG	1 cut(s)	151
BciVI	GTATCC	1 cut(s)	318
BfaI	CTAG	2 cut(s)	74, 344
BfuI	GTATCC	1 cut(s)	318
Bme1390I	CCNGG	1 cut(s)	151
Bme18I	GGWCC	1 cut(s)	172
BmeRI	GACNNNNNGTC	1 cut(s)	232
BmgT120I	GGNCC	1 cut(s)	172
BmrFI	CCNGG	1 cut(s)	151
BmsI	GCATC	1 cut(s)	250
Bse118I	RCCGGY	1 cut(s)	62
Bse3DI	GCAATG	1 cut(s)	54
BseBI	CCWGG	1 cut(s)	151
BseGI	GGATG	2 cut(s)	162, 241
BseMI	GCAATG	1 cut(s)	54
BseRI	GAGGAG	1 cut(s)	335
BshFI	GGCC	2 cut(s)	53, 66
BsiSI	CCGG	1 cut(s)	63
BslFI	GGGAC	1 cut(s)	239
BsmFI	GGGAC	1 cut(s)	239
BsnI	GGCC	2 cut(s)	53, 66
BspANI	GGCC	2 cut(s)	53, 66
BsrDI	GCAATG	1 cut(s)	54
BsrFI	RCCGGY	1 cut(s)	62
BssAI	RCCGGY	1 cut(s)	62
BssSI	CACGAG	1 cut(s)	68
Bst2BI	CACGAG	1 cut(s)	68
Bst2UI	CCWGG	1 cut(s)	151
Bst4CI	ACNGT	1 cut(s)	25
BstF5I	GGATG	2 cut(s)	162, 241
BstNI	CCWGG	1 cut(s)	151
BstSCI	CCNGG	1 cut(s)	149
BstXI	CCANNNNNNTGG	1 cut(s)	383
BsuI	GTATCC	1 cut(s)	318
BsuRI	GGCC	2 cut(s)	53, 66
BtsCI	GGATG	2 cut(s)	162, 241
BtsI	GCAGTG	1 cut(s)	294
BtsIMutI	CAGTG	2 cut(s)	21, 294
Cfr10I	RCCGGY	1 cut(s)	62
Cfr13I	GGNCC	1 cut(s)	172
Csp6I	GTAC	1 cut(s)	315
CviJI	RGCY	6 cut(s)	53, 66, 73, 215, 293, 412
CviKI_1	RGCY	6 cut(s)	53, 66, 73, 215, 293, 412
CviQI	GTAC	1 cut(s)	315
DriI	GACNNNNNGTC	1 cut(s)	232
EaeI	YGGCCR	2 cut(s)	51, 64
Eam1105I	GACNNNNNGTC	1 cut(s)	232
Eco47I	GGWCC	1 cut(s)	172
EcoO109I	RGGNCCY	1 cut(s)	172
EcoRII	CCWGG	1 cut(s)	149
FaiI	YATR	9 cut(s)	6, 47, 95, 192, 210, 223, 361, 363, 429
FaqI	GGGAC	1 cut(s)	239
FokI	GGATG	2 cut(s)	149, 228
FspBI	CTAG	2 cut(s)	74, 344
HaeIII	GGCC	2 cut(s)	53, 66
HapII	CCGG	1 cut(s)	63
HpaII	CCGG	1 cut(s)	63
Hpy166II	GTNNAC	1 cut(s)	16
Hpy188III	TCNNGA	1 cut(s)	278
Hpy8I	GTNNAC	1 cut(s)	16
HpyAV	CCTTC	2 cut(s)	28, 253
HpyCH4III	ACNGT	1 cut(s)	25
HpyCH4V	TGCA	1 cut(s)	405
LmnI	GCTCC	1 cut(s)	77
LpnPI	CCDG	7 cut(s)	76, 136, 163, 186, 263, 342, 389
LweI	GCATC	1 cut(s)	250
MaeI	CTAG	2 cut(s)	74, 344
MboII	GAAGA	4 cut(s)	40, 43, 268, 293
MlsI	TGGCCA	1 cut(s)	53
MluCI	AATT	5 cut(s)	82, 270, 351, 381, 400
MluNI	TGGCCA	1 cut(s)	53
MmeI	TCCRAC	3 cut(s)	87, 102, 269
MnlI	CCTC	3 cut(s)	34, 313, 361
Mox20I	TGGCCA	1 cut(s)	53
MscI	TGGCCA	1 cut(s)	53
MslI	CAYNNNNRTG	1 cut(s)	23
Msp20I	TGGCCA	1 cut(s)	53
MspI	CCGG	1 cut(s)	63
MspR9I	CCNGG	1 cut(s)	151
MvaI	CCWGG	1 cut(s)	151
OliI	CACNNNNGTG	1 cut(s)	23
PfoI	TCCNGGA	1 cut(s)	149
PpuMI	RGGWCCY	1 cut(s)	172
Psp5II	RGGWCCY	1 cut(s)	172
Psp6I	CCWGG	1 cut(s)	149
PspGI	CCWGG	1 cut(s)	149
PspPI	GGNCC	1 cut(s)	172
PspPPI	RGGWCCY	1 cut(s)	172
RsaI	GTAC	1 cut(s)	316
RsaNI	GTAC	1 cut(s)	315
RseI	CAYNNNNRTG	1 cut(s)	23
Sau96I	GGNCC	1 cut(s)	172
ScrFI	CCNGG	1 cut(s)	151
SetI	ASST	5 cut(s)	39, 75, 174, 217, 236
SfaNI	GCATC	1 cut(s)	250
SinI	GGWCC	1 cut(s)	172
SmiMI	CAYNNNNRTG	1 cut(s)	23
Sse9I	AATT	5 cut(s)	82, 270, 351, 381, 400
SspMI	CTAG	2 cut(s)	74, 344
StyD4I	CCNGG	1 cut(s)	149
TaaI	ACNGT	1 cut(s)	25
TaqI	TCGA	1 cut(s)	158
TasI	AATT	5 cut(s)	82, 270, 351, 381, 400
TatI	WGTACW	1 cut(s)	314
TscAI	CASTG	2 cut(s)	28, 294
TspDTI	ATGAA	2 cut(s)	75, 225
TspRI	CASTG	2 cut(s)	28, 294
VpaK11BI	GGWCC	1 cut(s)	172
XapI	RAATTY	2 cut(s)	82, 270
XspI	CTAG	2 cut(s)	74, 344

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.