Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0003219

Physical Location & Seq

Genomic Coordinates Reverse (-)

17509069 .. 17513064

Gene Structure 3996 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G41945.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 477 bp

ATGGGAACGAGACAAGTATACGAAGAGAAGCTTCGGCGTGGGAATCTTGATTATGATCCGACTATGAATCCTGGTCTTGGTTCTGCTCGGTGTCCTCGTTGTCTTTCTCTCTTAAACCCTAATTCAGAGAAAGGAGAGTGGACGATAACTCCAGTTTTACACGATGCTGCTGCAGTGGCTGGTTCTGGTATTGGTGGCTTGCTTAGTGCCGTCCATGCTTTCAATACAGGGATCCCCTATCTTCAAAATCGGTTTTCCGGGTCAAAGCGGCTTTCCTTTCTTGTGGGGGTTCCATTGCTTCTAGTATATTCAGGTGTAGGGGCTGCTTTTGGAGGTTATGCACTTCCAAAGTTTGCTCAGCTGACAGTTACCTCGTATTATGCATCTTCAAGTGCTTCACATTATGGAATTTCTATGCTAACCCGGCGTATCGAAGAAGCTCATCTCTCTCGAACTCAGAAAGAAGAGGTAAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

158

Amino Acids

17.05

Weight (kDa)

9.36

Isoelectric Point (pI)

38.21

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003219)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G41945 AT2G41945 AT2G41945
fragaria_vesca	FvH4_6g21750 FvH4_6g21750 FvH4_6g21750 FvH4_6g21750 FvH4_6g21750 FvH4_6g21750
malus_domestica	MD03G1221500.v1.1 MD11G1239000.v1.1
prunus_persica	Prupe.7G082900_v2.0.a1 Prupe.7G082900_v2.0.a1
pyrus_communis	pycom11g21050
rosa_chinensis	RchiOBHm_Chr3g0479091
rosa_laevigata	RLG00000023608
rosa_multiflora	Rmu_sc0005645.1_g000017 Rmu_sc0005992.1_g000001
rosa_roxburghii	Rroxscaffold_6G00402740
rosa_rugosa	Rorug03G0170500 Rorug03G0170600 Rorug03G0170700 Rorug03G0170700 Rorug03G0170800 Rorug03G0170900 Rorug03G0304400 Rorug03G0304500 Rorug03G0304600 Rorug03G0304700
rosa_samantha	Rh3AG221800 Rh3BG254300 Rh3DG246500 Rh4AG008600 Rh4CG009300 Rh4CG009700 Rh4CG009800
rosa_wichuraiana	Rw3G019910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	18
AciI	CCGC	1 cut(s)	268
AclWI	GGATC	3 cut(s)	50, 226, 239
AcsI	RAATTY	1 cut(s)	408
AfiI	CCNNNNNNNGG	1 cut(s)	77
AgsI	TTSAA	3 cut(s)	223, 245, 390
AjnI	CCWGG	1 cut(s)	70
AluBI	AGCT	3 cut(s)	31, 361, 440
AluI	AGCT	3 cut(s)	31, 361, 440
Alw26I	GTCTC	1 cut(s)	4
AlwI	GGATC	3 cut(s)	50, 226, 239
AlwNI	CAGNNNCTG	1 cut(s)	179
ApeKI	GCWGC	3 cut(s)	167, 170, 323
ApoI	RAATTY	1 cut(s)	408
AsuC2I	CCSGG	2 cut(s)	259, 424
BamHI	GGATCC	1 cut(s)	231
BbvI	GCAGC	3 cut(s)	154, 157, 310
BceAI	ACGGC	1 cut(s)	194
BcgI	CGANNNNNNTGC	2 cut(s)	152, 186
BciT130I	CCWGG	1 cut(s)	72
BcnI	CCSGG	2 cut(s)	259, 424
BcoDI	GTCTC	1 cut(s)	4
BfaI	CTAG	1 cut(s)	302
BfmI	CTRYAG	1 cut(s)	171
BisI	GCNGC	4 cut(s)	168, 171, 269, 324
BlpI	GCTNAGC	1 cut(s)	357
BlsI	GCNGC	4 cut(s)	169, 172, 270, 325
Bme1390I	CCNGG	3 cut(s)	72, 259, 424
BmiI	GGNNCC	2 cut(s)	233, 291
BmrFI	CCNGG	3 cut(s)	72, 259, 424
BmsI	GCATC	2 cut(s)	154, 392
BpmI	CTGGAG	1 cut(s)	135
Bpu1102I	GCTNAGC	1 cut(s)	357
BpuMI	CCSGG	2 cut(s)	259, 424
BsaBI	GATNNNNATC	1 cut(s)	54
BsaXI	ACNNNNNCTCC	2 cut(s)	133, 163
Bsc4I	CCNNNNNNNGG	1 cut(s)	77
Bse1I	ACTGG	1 cut(s)	152
Bse3DI	GCAATG	1 cut(s)	293
Bse8I	GATNNNNATC	1 cut(s)	54
BseBI	CCWGG	1 cut(s)	72
BseJI	GATNNNNATC	1 cut(s)	54
BseLI	CCNNNNNNNGG	1 cut(s)	77
BseMI	GCAATG	1 cut(s)	293
BseMII	CTCAG	2 cut(s)	371, 470
BseNI	ACTGG	1 cut(s)	152
BseXI	GCAGC	3 cut(s)	154, 157, 310
BsiSI	CCGG	2 cut(s)	258, 424
BslI	CCNNNNNNNGG	1 cut(s)	77
BsmAI	GTCTC	1 cut(s)	4
Bsp143I	GATC	2 cut(s)	55, 231
Bsp1720I	GCTNAGC	1 cut(s)	357
BspACI	CCGC	1 cut(s)	268
BspCNI	CTCAG	2 cut(s)	370, 469
BspLI	GGNNCC	2 cut(s)	233, 291
BspMAI	CTGCAG	1 cut(s)	175
BspPI	GGATC	3 cut(s)	50, 226, 239
BsrDI	GCAATG	1 cut(s)	293
BsrI	ACTGG	1 cut(s)	152
BssMI	GATC	2 cut(s)	55, 231
BssNAI	GTATAC	1 cut(s)	19
Bst1107I	GTATAC	1 cut(s)	19
Bst2UI	CCWGG	1 cut(s)	72
Bst4CI	ACNGT	1 cut(s)	367
Bst6I	CTCTTC	2 cut(s)	18, 459
BstC8I	GCNNGC	1 cut(s)	200
BstDEI	CTNAG	3 cut(s)	203, 357, 456
BstKTI	GATC	2 cut(s)	58, 234
BstMAI	GTCTC	1 cut(s)	4
BstMBI	GATC	2 cut(s)	55, 231
BstMWI	GCNNNNNNNGC	3 cut(s)	176, 215, 424
BstNI	CCWGG	1 cut(s)	72
BstSCI	CCNGG	3 cut(s)	70, 257, 422
BstSFI	CTRYAG	1 cut(s)	171
BstV1I	GCAGC	3 cut(s)	154, 157, 310
BstX2I	RGATCY	1 cut(s)	231
BstYI	RGATCY	1 cut(s)	231
BstZ17I	GTATAC	1 cut(s)	19
BtsI	GCAGTG	1 cut(s)	180
BtsIMutI	CAGTG	1 cut(s)	180
Cac8I	GCNNGC	1 cut(s)	200
CaiI	CAGNNNCTG	1 cut(s)	179
CviAII	CATG	1 cut(s)	215
CviJI	RGCY	7 cut(s)	31, 179, 198, 271, 323, 361, 440
CviKI_1	RGCY	7 cut(s)	31, 179, 198, 271, 323, 361, 440
DdeI	CTNAG	3 cut(s)	203, 357, 456
DpnI	GATC	2 cut(s)	57, 233
DpnII	GATC	2 cut(s)	55, 231
Eam1104I	CTCTTC	2 cut(s)	18, 459
EarI	CTCTTC	2 cut(s)	18, 459
EcoRII	CCWGG	1 cut(s)	70
EcoT22I	ATGCAT	1 cut(s)	385
FaeI	CATG	1 cut(s)	218
FaiI	YATR	9 cut(s)	19, 54, 65, 216, 307, 339, 381, 405, 416
FalI	AAGNNNNNCTT	2 cut(s)	15, 47
FatI	CATG	1 cut(s)	214
FblI	GTMKAC	1 cut(s)	18
Fnu4HI	GCNGC	4 cut(s)	168, 171, 269, 324
Fsp4HI	GCNGC	4 cut(s)	168, 171, 269, 324
FspBI	CTAG	1 cut(s)	302
GluI	GCNGC	4 cut(s)	168, 171, 269, 324
GsuI	CTGGAG	1 cut(s)	135
HapII	CCGG	2 cut(s)	258, 424
Hin1II	CATG	1 cut(s)	218
HindIII	AAGCTT	1 cut(s)	29
HinfI	GANTC	2 cut(s)	43, 67
HpaII	CCGG	2 cut(s)	258, 424
Hpy166II	GTNNAC	2 cut(s)	19, 141
Hpy188I	TCNGA	3 cut(s)	60, 127, 459
Hpy188III	TCNNGA	2 cut(s)	47, 450
Hpy8I	GTNNAC	2 cut(s)	19, 141
HpyCH4III	ACNGT	1 cut(s)	367
HpyCH4V	TGCA	3 cut(s)	173, 341, 383
HpyF10VI	GCNNNNNNNGC	3 cut(s)	176, 215, 424
HpyF3I	CTNAG	3 cut(s)	203, 357, 456
Hsp92II	CATG	1 cut(s)	218
Kzo9I	GATC	2 cut(s)	55, 231
LpnPI	CCDG	9 cut(s)	57, 84, 165, 165, 171, 213, 271, 297, 437
Lsp1109I	GCAGC	3 cut(s)	154, 157, 310
LweI	GCATC	2 cut(s)	154, 392
MaeI	CTAG	1 cut(s)	302
MaeIII	GTNAC	1 cut(s)	367
MalI	GATC	2 cut(s)	57, 233
MboI	GATC	2 cut(s)	55, 231
MboII	GAAGA	5 cut(s)	35, 233, 378, 446, 476
MflI	RGATCY	1 cut(s)	231
MluCI	AATT	2 cut(s)	121, 408
MmeI	TCCRAC	1 cut(s)	83
MnlI	CCTC	4 cut(s)	105, 326, 382, 460
Mph1103I	ATGCAT	1 cut(s)	385
MseI	TTAA	1 cut(s)	113
MspA1I	CMGCKG	1 cut(s)	361
MspI	CCGG	2 cut(s)	258, 424
MspR9I	CCNGG	3 cut(s)	72, 259, 424
MvaI	CCWGG	1 cut(s)	72
MwoI	GCNNNNNNNGC	3 cut(s)	176, 215, 424
NciI	CCSGG	2 cut(s)	259, 424
NdeII	GATC	2 cut(s)	55, 231
NlaIII	CATG	1 cut(s)	218
NlaIV	GGNNCC	2 cut(s)	233, 291
NsiI	ATGCAT	1 cut(s)	385
PcsI	WCGNNNNNNNCGW	1 cut(s)	94
PfeI	GAWTC	2 cut(s)	43, 67
PkrI	GCNGC	4 cut(s)	169, 172, 270, 325
Psp6I	CCWGG	1 cut(s)	70
PspGI	CCWGG	1 cut(s)	70
PspN4I	GGNNCC	2 cut(s)	233, 291
PstI	CTGCAG	1 cut(s)	175
PstNI	CAGNNNCTG	1 cut(s)	179
PsuI	RGATCY	1 cut(s)	231
PvuII	CAGCTG	1 cut(s)	361
SaqAI	TTAA	1 cut(s)	113
SatI	GCNGC	4 cut(s)	168, 171, 269, 324
Sau3AI	GATC	2 cut(s)	55, 231
ScrFI	CCNGG	3 cut(s)	72, 259, 424
SetI	ASST	7 cut(s)	33, 316, 337, 363, 374, 442, 471
SfaNI	GCATC	2 cut(s)	154, 392
SfcI	CTRYAG	1 cut(s)	171
Sse9I	AATT	2 cut(s)	121, 408
SsiI	CCGC	1 cut(s)	268
SspMI	CTAG	1 cut(s)	302
StyD4I	CCNGG	3 cut(s)	70, 257, 422
TaaI	ACNGT	1 cut(s)	367
TaqI	TCGA	2 cut(s)	432, 451
TasI	AATT	2 cut(s)	121, 408
TauI	GCSGC	1 cut(s)	271
TfiI	GAWTC	2 cut(s)	43, 67
Tru1I	TTAA	1 cut(s)	113
Tru9I	TTAA	1 cut(s)	113
TscAI	CASTG	1 cut(s)	180
TseI	GCWGC	3 cut(s)	167, 170, 323
TspDTI	ATGAA	1 cut(s)	80
TspRI	CASTG	1 cut(s)	180
XapI	RAATTY	1 cut(s)	408
XmiI	GTMKAC	1 cut(s)	18
XspI	CTAG	1 cut(s)	302
Zsp2I	ATGCAT	1 cut(s)	385

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.