Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp07

Orthogroup ID

OG0003219

Physical Location & Seq

Genomic Coordinates Reverse (-)

11816291 .. 11822022

Gene Structure 5732 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.7G082900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 477 bp

ATGGGGACGAGAGAGGTGTACGAACAGAAGCTGAGGAGTGGGAATCTGCATCATGATCCCACCATGAATCCAGGCCTTGGCACCCCTCGCTGCCCTCGCTGTCTCTGTCTCCTGGACCATGATTCGGACAAGGGTGAATGGACCATCACTTCTGTTCTTCATGACGCCACTGCTGTTGCTGGCTCTGGTATTGGTGGAATGCTTAGTGCAGTTCATGGCGTCAATACAGGGATCCCGTACCTTCAGAATCGATTGAAGGGCCCAAAGTGGCTTCCTTTCTTAGTTGGGCTTCCTCCACTGCTACTGTTTTCGGGTGCCAGTGCTGCATTTGGAGGTTATGCACTTCCAAGGTTTACTCAACTCACTGTGACTTCCTATTATGCTACCTCAAGTGCCTCACACTATGGGATTTCACTTCTCACTCGGCATATTGAAGAAGCTCACAGTTCCCGCTCTCGGCAAGAAAGACCCAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

159

Amino Acids

17.17

Weight (kDa)

9.15

Isoelectric Point (pI)

40.3

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003219)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G41945 AT2G41945 AT2G41945
fragaria_vesca	FvH4_6g21750 FvH4_6g21750 FvH4_6g21750 FvH4_6g21750 FvH4_6g21750 FvH4_6g21750
malus_domestica	MD03G1221500.v1.1 MD11G1239000.v1.1
prunus_persica	Prupe.7G082900_v2.0.a1 Prupe.7G082900_v2.0.a1
pyrus_communis	pycom11g21050
rosa_chinensis	RchiOBHm_Chr3g0479091
rosa_laevigata	RLG00000023608
rosa_multiflora	Rmu_sc0005645.1_g000017 Rmu_sc0005992.1_g000001
rosa_roxburghii	Rroxscaffold_6G00402740
rosa_rugosa	Rorug03G0170500 Rorug03G0170600 Rorug03G0170700 Rorug03G0170700 Rorug03G0170800 Rorug03G0170900 Rorug03G0304400 Rorug03G0304500 Rorug03G0304600 Rorug03G0304700
rosa_samantha	Rh3AG221800 Rh3BG254300 Rh3DG246500 Rh4AG008600 Rh4CG009300 Rh4CG009700 Rh4CG009800
rosa_wichuraiana	Rw3G019910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	80, 314
AccB7I	CCANNNNNTGG	1 cut(s)	77
AccBSI	CCGCTC	1 cut(s)	453
AciI	CCGC	1 cut(s)	451
AclWI	GGATC	3 cut(s)	50, 226, 239
AcuI	CTGAAG	1 cut(s)	227
AcyI	GRCGYC	2 cut(s)	165, 219
AfaI	GTAC	2 cut(s)	20, 239
AfiI	CCNNNNNNNGG	3 cut(s)	77, 124, 456
AgsI	TTSAA	2 cut(s)	256, 434
AjnI	CCWGG	2 cut(s)	70, 111
AluBI	AGCT	2 cut(s)	31, 440
AluI	AGCT	2 cut(s)	31, 440
Alw26I	GTCTC	2 cut(s)	107, 113
AlwI	GGATC	3 cut(s)	50, 226, 239
AlwNI	CAGNNNCTG	1 cut(s)	31
AoxI	GGCC	2 cut(s)	73, 259
ApaI	GGGCCC	1 cut(s)	263
ApeKI	GCWGC	2 cut(s)	90, 323
AspS9I	GGNCC	4 cut(s)	115, 141, 259, 260
AsuHPI	GGTGA	1 cut(s)	146
AvaII	GGWCC	2 cut(s)	115, 141
BaeGI	GKGCMC	1 cut(s)	263
BamHI	GGATCC	1 cut(s)	231
BanI	GGYRCC	2 cut(s)	80, 314
BanII	GRGCYC	1 cut(s)	263
BbvCI	CCTCAGC	1 cut(s)	32
BbvI	GCAGC	2 cut(s)	77, 310
BccI	CCATC	1 cut(s)	152
BciT130I	CCWGG	2 cut(s)	72, 113
BcoDI	GTCTC	2 cut(s)	107, 113
BisI	GCNGC	2 cut(s)	91, 324
BlsI	GCNGC	2 cut(s)	92, 325
Bme1390I	CCNGG	2 cut(s)	72, 113
Bme18I	GGWCC	2 cut(s)	115, 141
BmgT120I	GGNCC	4 cut(s)	115, 141, 259, 260
BmiI	GGNNCC	4 cut(s)	82, 233, 261, 316
BmrFI	CCNGG	2 cut(s)	72, 113
BmsI	GCATC	1 cut(s)	58
Bpu10I	CCTNAGC	1 cut(s)	32
BpuEI	CTTGAG	1 cut(s)	373
Bsa29I	ATCGAT	1 cut(s)	250
BsaHI	GRCGYC	2 cut(s)	165, 219
BsaJI	CCNNGG	2 cut(s)	76, 347
Bsc4I	CCNNNNNNNGG	3 cut(s)	77, 124, 456
Bse1I	ACTGG	1 cut(s)	318
BseBI	CCWGG	2 cut(s)	72, 113
BseCI	ATCGAT	1 cut(s)	250
BseDI	CCNNGG	2 cut(s)	76, 347
BseLI	CCNNNNNNNGG	3 cut(s)	77, 124, 456
BseMII	CTCAG	1 cut(s)	23
BseNI	ACTGG	1 cut(s)	318
BseRI	GAGGAG	1 cut(s)	49
BseSI	GKGCMC	1 cut(s)	263
BseXI	GCAGC	2 cut(s)	77, 310
BsgI	GTGCAG	1 cut(s)	228
BshFI	GGCC	2 cut(s)	75, 261
BshNI	GGYRCC	2 cut(s)	80, 314
BshVI	ATCGAT	1 cut(s)	250
BslFI	GGGAC	1 cut(s)	19
BslI	CCNNNNNNNGG	3 cut(s)	77, 124, 456
BsmAI	GTCTC	2 cut(s)	107, 113
BsmFI	GGGAC	1 cut(s)	19
BsmI	GAATGC	1 cut(s)	204
BsnI	GGCC	2 cut(s)	75, 261
Bsp120I	GGGCCC	1 cut(s)	259
Bsp1286I	GDGCHC	1 cut(s)	263
Bsp143I	GATC	2 cut(s)	55, 231
BspACI	CCGC	1 cut(s)	451
BspANI	GGCC	2 cut(s)	75, 261
BspCNI	CTCAG	1 cut(s)	24
BspDI	ATCGAT	1 cut(s)	250
BspHI	TCATGA	2 cut(s)	52, 160
BspLI	GGNNCC	4 cut(s)	82, 233, 261, 316
BspPI	GGATC	3 cut(s)	50, 226, 239
BspT107I	GGYRCC	2 cut(s)	80, 314
BsrBI	CCGCTC	1 cut(s)	453
BsrI	ACTGG	1 cut(s)	318
BssECI	CCNNGG	2 cut(s)	76, 347
BssMI	GATC	2 cut(s)	55, 231
BssNI	GRCGYC	2 cut(s)	165, 219
BssT1I	CCWWGG	2 cut(s)	76, 347
Bst2UI	CCWGG	2 cut(s)	72, 113
Bst4CI	ACNGT	3 cut(s)	306, 367, 446
BstACI	GRCGYC	2 cut(s)	165, 219
BstC8I	GCNNGC	1 cut(s)	181
BstDEI	CTNAG	3 cut(s)	32, 203, 280
BstKTI	GATC	2 cut(s)	58, 234
BstMAI	GTCTC	2 cut(s)	107, 113
BstMBI	GATC	2 cut(s)	55, 231
BstMWI	GCNNNNNNNGC	3 cut(s)	87, 96, 323
BstNI	CCWGG	2 cut(s)	72, 113
BstSCI	CCNGG	2 cut(s)	70, 111
BstSLI	GKGCMC	1 cut(s)	263
BstV1I	GCAGC	2 cut(s)	77, 310
BstX2I	RGATCY	1 cut(s)	231
BstYI	RGATCY	1 cut(s)	231
Bsu15I	ATCGAT	1 cut(s)	250
BsuRI	GGCC	2 cut(s)	75, 261
BsuTUI	ATCGAT	1 cut(s)	250
BtsI	GCAGTG	2 cut(s)	168, 296
BtsIMutI	CAGTG	4 cut(s)	168, 296, 325, 363
Cac8I	GCNNGC	1 cut(s)	181
CaiI	CAGNNNCTG	1 cut(s)	31
CciI	TCATGA	2 cut(s)	52, 160
Cfr13I	GGNCC	4 cut(s)	115, 141, 259, 260
ClaI	ATCGAT	1 cut(s)	250
CseI	GACGC	2 cut(s)	173, 208
Csp6I	GTAC	2 cut(s)	19, 238
CspCI	CAANNNNNGTGG	2 cut(s)	157, 192
CviAII	CATG	5 cut(s)	53, 64, 119, 161, 215
CviJI	RGCY	7 cut(s)	31, 75, 183, 261, 271, 289, 440
CviKI_1	RGCY	7 cut(s)	31, 75, 183, 261, 271, 289, 440
CviQI	GTAC	2 cut(s)	19, 238
DdeI	CTNAG	3 cut(s)	32, 203, 280
DpnI	GATC	2 cut(s)	57, 233
DpnII	GATC	2 cut(s)	55, 231
Eco130I	CCWWGG	2 cut(s)	76, 347
Eco147I	AGGCCT	1 cut(s)	75
Eco24I	GRGCYC	1 cut(s)	263
Eco47I	GGWCC	2 cut(s)	115, 141
Eco57I	CTGAAG	1 cut(s)	227
EcoO109I	RGGNCCY	1 cut(s)	259
EcoRII	CCWGG	2 cut(s)	70, 111
EcoT14I	CCWWGG	2 cut(s)	76, 347
EcoT38I	GRGCYC	1 cut(s)	263
ErhI	CCWWGG	2 cut(s)	76, 347
FaeI	CATG	5 cut(s)	56, 67, 122, 164, 218
FaiI	YATR	9 cut(s)	54, 65, 120, 162, 216, 339, 381, 405, 429
FaqI	GGGAC	1 cut(s)	19
FatI	CATG	5 cut(s)	52, 63, 118, 160, 214
FauI	CCCGC	1 cut(s)	458
Fnu4HI	GCNGC	2 cut(s)	91, 324
FriOI	GRGCYC	1 cut(s)	263
Fsp4HI	GCNGC	2 cut(s)	91, 324
GluI	GCNGC	2 cut(s)	91, 324
HaeIII	GGCC	2 cut(s)	75, 261
HgaI	GACGC	2 cut(s)	173, 208
Hin1I	GRCGYC	2 cut(s)	165, 219
Hin1II	CATG	5 cut(s)	56, 67, 122, 164, 218
HinfI	GANTC	4 cut(s)	43, 67, 122, 247
HphI	GGTGA	1 cut(s)	146
Hpy166II	GTNNAC	2 cut(s)	19, 354
Hpy188I	TCNGA	2 cut(s)	127, 246
Hpy188III	TCNNGA	2 cut(s)	53, 161
Hpy8I	GTNNAC	2 cut(s)	19, 354
HpyAV	CCTTC	2 cut(s)	250, 251
HpyCH4III	ACNGT	3 cut(s)	306, 367, 446
HpyCH4V	TGCA	4 cut(s)	49, 209, 326, 341
HpyF10VI	GCNNNNNNNGC	3 cut(s)	87, 96, 323
HpyF3I	CTNAG	3 cut(s)	32, 203, 280
Hsp92I	GRCGYC	2 cut(s)	165, 219
Hsp92II	CATG	5 cut(s)	56, 67, 122, 164, 218
Kzo9I	GATC	2 cut(s)	55, 231
LpnPI	CCDG	8 cut(s)	57, 84, 98, 125, 165, 171, 213, 331
Lsp1109I	GCAGC	2 cut(s)	77, 310
LweI	GCATC	1 cut(s)	58
MaeIII	GTNAC	1 cut(s)	367
MalI	GATC	2 cut(s)	57, 233
MbiI	CCGCTC	1 cut(s)	453
MboI	GATC	2 cut(s)	55, 231
MboII	GAAGA	2 cut(s)	149, 446
MflI	RGATCY	1 cut(s)	231
MhlI	GDGCHC	1 cut(s)	263
MnlI	CCTC	8 cut(s)	7, 27, 96, 105, 303, 326, 397, 406
MspR9I	CCNGG	2 cut(s)	72, 113
Mva1269I	GAATGC	1 cut(s)	204
MvaI	CCWGG	2 cut(s)	72, 113
MwoI	GCNNNNNNNGC	3 cut(s)	87, 96, 323
NdeII	GATC	2 cut(s)	55, 231
NlaIII	CATG	5 cut(s)	56, 67, 122, 164, 218
NlaIV	GGNNCC	4 cut(s)	82, 233, 261, 316
NmeAIII	GCCGAG	2 cut(s)	403, 436
NmuCI	GTSAC	1 cut(s)	367
PagI	TCATGA	2 cut(s)	52, 160
PceI	AGGCCT	1 cut(s)	75
PctI	GAATGC	1 cut(s)	204
PfeI	GAWTC	4 cut(s)	43, 67, 122, 247
PflMI	CCANNNNNTGG	1 cut(s)	77
PfoI	TCCNGGA	1 cut(s)	111
PkrI	GCNGC	2 cut(s)	92, 325
Psp6I	CCWGG	2 cut(s)	70, 111
PspGI	CCWGG	2 cut(s)	70, 111
PspN4I	GGNNCC	4 cut(s)	82, 233, 261, 316
PspOMI	GGGCCC	1 cut(s)	259
PspPI	GGNCC	4 cut(s)	115, 141, 259, 260
PstNI	CAGNNNCTG	1 cut(s)	31
PsuI	RGATCY	1 cut(s)	231
RsaI	GTAC	2 cut(s)	20, 239
RsaNI	GTAC	2 cut(s)	19, 238
SatI	GCNGC	2 cut(s)	91, 324
Sau3AI	GATC	2 cut(s)	55, 231
Sau96I	GGNCC	4 cut(s)	115, 141, 259, 260
ScrFI	CCNGG	2 cut(s)	72, 113
SduI	GDGCHC	1 cut(s)	263
SetI	ASST	7 cut(s)	18, 33, 243, 337, 353, 389, 442
SfaNI	GCATC	1 cut(s)	58
SinI	GGWCC	2 cut(s)	115, 141
SmlI	CTYRAG	1 cut(s)	388
SmoI	CTYRAG	1 cut(s)	388
SseBI	AGGCCT	1 cut(s)	75
SsiI	CCGC	1 cut(s)	451
StuI	AGGCCT	1 cut(s)	75
StyD4I	CCNGG	2 cut(s)	70, 111
StyI	CCWWGG	2 cut(s)	76, 347
TaaI	ACNGT	3 cut(s)	306, 367, 446
TaqI	TCGA	1 cut(s)	250
TfiI	GAWTC	4 cut(s)	43, 67, 122, 247
TscAI	CASTG	4 cut(s)	175, 303, 325, 370
TseFI	GTSAC	1 cut(s)	367
TseI	GCWGC	2 cut(s)	90, 323
Tsp45I	GTSAC	1 cut(s)	367
TspDTI	ATGAA	3 cut(s)	80, 149, 203
TspRI	CASTG	4 cut(s)	175, 303, 325, 370
Van91I	CCANNNNNTGG	1 cut(s)	77
VpaK11BI	GGWCC	2 cut(s)	115, 141

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.