Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0003219

Physical Location & Seq

Genomic Coordinates Reverse (-)

25235880 .. 25240515

Gene Structure 4636 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00402740.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 639 bp

ATGGGGACGAGAGAGGTTTATGAACAGAAGCTAAGGAGTGGGAATCTGCATCATGATCCTACCATGAAACCAGGCCTCGGCACCCCTCGCTGCCCGCGCTGTCTCTCTCTCCTTGACCATGATTCGGGAAAGGGTGAATGGACTATCACTCCTGTTCTTCATGACGCCACTGCTGTTGCTGGCTCAGGTATTGGTGGAATGCTTAGTGCAATTCATGGCTTCAATACAGGGATCCCGTACCTTCAGAATCGCTTAAAAGGACCAAAGTGGCTTCCTTTCTTAGTTGGGCTTCCTCCTCTGCTACTGTTTTCGGGTGCCAGTGCTGCATTTGGAGGAGATGAGATTAAAAAGAAGAACTTGGTTTTTGGTTGGCTCTGTTCTACTGTGAGATCTGACAAAGAAGTTTTGCTTGAAGTTGGGTACTGTGACAAGGTTTTAGAGGAAGATCTCTCGACAGATCCCTGGTTGGGTACTTTGGAGAATTTGTTTGTTACATGTTATGCACTTCCAAAGTTTGCTCAACTCACAGTGACTTCGTATTATGCCACCTCAAGTGCCTCACATTATGGGATTTCGCTTCTTACTCGACATATTGAAGAGTCTCATACTTCCCGCTCTCAGCAAGAAAGACTCAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

212

Amino Acids

23.32

Weight (kDa)

7.08

Isoelectric Point (pI)

39.2

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003219)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G41945 AT2G41945 AT2G41945
fragaria_vesca	FvH4_6g21750 FvH4_6g21750 FvH4_6g21750 FvH4_6g21750 FvH4_6g21750 FvH4_6g21750
malus_domestica	MD03G1221500.v1.1 MD11G1239000.v1.1
prunus_persica	Prupe.7G082900_v2.0.a1 Prupe.7G082900_v2.0.a1
pyrus_communis	pycom11g21050
rosa_chinensis	RchiOBHm_Chr3g0479091
rosa_laevigata	RLG00000023608
rosa_multiflora	Rmu_sc0005645.1_g000017 Rmu_sc0005992.1_g000001
rosa_roxburghii	Rroxscaffold_6G00402740
rosa_rugosa	Rorug03G0170500 Rorug03G0170600 Rorug03G0170700 Rorug03G0170700 Rorug03G0170800 Rorug03G0170900 Rorug03G0304400 Rorug03G0304500 Rorug03G0304600 Rorug03G0304700
rosa_samantha	Rh3AG221800 Rh3BG254300 Rh3DG246500 Rh4AG008600 Rh4CG009300 Rh4CG009700 Rh4CG009800
rosa_wichuraiana	Rw3G019910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	80, 314
AccBSI	CCGCTC	1 cut(s)	615
AccII	CGCG	1 cut(s)	97
AciI	CCGC	2 cut(s)	95, 613
AclWI	GGATC	4 cut(s)	50, 226, 239, 452
AcsI	RAATTY	1 cut(s)	481
AcuI	CTGAAG	1 cut(s)	227
AcyI	GRCGYC	1 cut(s)	165
AfaI	GTAC	3 cut(s)	239, 422, 472
AfiI	CCNNNNNNNGG	3 cut(s)	77, 124, 467
AflIII	ACRYGT	1 cut(s)	494
AgsI	TTSAA	3 cut(s)	223, 413, 596
AjnI	CCWGG	2 cut(s)	70, 461
AluBI	AGCT	1 cut(s)	31
AluI	AGCT	1 cut(s)	31
Alw26I	GTCTC	2 cut(s)	107, 606
AlwI	GGATC	4 cut(s)	50, 226, 239, 452
AoxI	GGCC	1 cut(s)	73
ApeKI	GCWGC	2 cut(s)	90, 323
ApoI	RAATTY	1 cut(s)	481
AspLEI	GCGC	1 cut(s)	99
AspS9I	GGNCC	1 cut(s)	260
AsuHPI	GGTGA	1 cut(s)	146
AvaII	GGWCC	1 cut(s)	260
BamHI	GGATCC	1 cut(s)	231
BanI	GGYRCC	2 cut(s)	80, 314
BbvI	GCAGC	2 cut(s)	77, 310
BciT130I	CCWGG	2 cut(s)	72, 463
BcoDI	GTCTC	2 cut(s)	107, 606
BglII	AGATCT	2 cut(s)	389, 445
BisI	GCNGC	2 cut(s)	91, 324
BlsI	GCNGC	2 cut(s)	92, 325
Bme1390I	CCNGG	2 cut(s)	72, 463
Bme18I	GGWCC	1 cut(s)	260
BmgT120I	GGNCC	1 cut(s)	260
BmiI	GGNNCC	3 cut(s)	82, 233, 316
BmrFI	CCNGG	2 cut(s)	72, 463
BmsI	GCATC	1 cut(s)	58
Bpu10I	CCTNAGC	2 cut(s)	32, 184
BpuEI	CTTGAG	1 cut(s)	535
BsaHI	GRCGYC	1 cut(s)	165
BsaJI	CCNNGG	2 cut(s)	76, 461
BsaXI	ACNNNNNCTCC	4 cut(s)	133, 163, 470, 500
Bsc4I	CCNNNNNNNGG	3 cut(s)	77, 124, 467
Bse1I	ACTGG	1 cut(s)	318
BseBI	CCWGG	2 cut(s)	72, 463
BseDI	CCNNGG	2 cut(s)	76, 461
BseLI	CCNNNNNNNGG	3 cut(s)	77, 124, 467
BseMII	CTCAG	2 cut(s)	198, 632
BseNI	ACTGG	1 cut(s)	318
BseRI	GAGGAG	2 cut(s)	285, 348
BseXI	GCAGC	2 cut(s)	77, 310
Bsh1236I	CGCG	1 cut(s)	97
BshFI	GGCC	1 cut(s)	75
BshNI	GGYRCC	2 cut(s)	80, 314
BslFI	GGGAC	1 cut(s)	19
BslI	CCNNNNNNNGG	3 cut(s)	77, 124, 467
BsmAI	GTCTC	2 cut(s)	107, 606
BsmFI	GGGAC	1 cut(s)	19
BsmI	GAATGC	1 cut(s)	204
BsnI	GGCC	1 cut(s)	75
Bsp143I	GATC	5 cut(s)	55, 231, 389, 445, 457
BspACI	CCGC	2 cut(s)	95, 613
BspANI	GGCC	1 cut(s)	75
BspCNI	CTCAG	2 cut(s)	197, 631
BspFNI	CGCG	1 cut(s)	97
BspHI	TCATGA	2 cut(s)	52, 160
BspLI	GGNNCC	3 cut(s)	82, 233, 316
BspPI	GGATC	4 cut(s)	50, 226, 239, 452
BspT107I	GGYRCC	2 cut(s)	80, 314
BsrBI	CCGCTC	1 cut(s)	615
BsrI	ACTGG	1 cut(s)	318
BssECI	CCNNGG	2 cut(s)	76, 461
BssMI	GATC	5 cut(s)	55, 231, 389, 445, 457
BssNI	GRCGYC	1 cut(s)	165
Bst2UI	CCWGG	2 cut(s)	72, 463
Bst4CI	ACNGT	4 cut(s)	306, 385, 425, 529
Bst6I	CTCTTC	1 cut(s)	591
BstACI	GRCGYC	1 cut(s)	165
BstC8I	GCNNGC	2 cut(s)	95, 181
BstDEI	CTNAG	6 cut(s)	32, 184, 203, 280, 618, 632
BstFNI	CGCG	1 cut(s)	97
BstHHI	GCGC	1 cut(s)	99
BstKTI	GATC	5 cut(s)	58, 234, 392, 448, 460
BstMAI	GTCTC	2 cut(s)	107, 606
BstMBI	GATC	5 cut(s)	55, 231, 389, 445, 457
BstMWI	GCNNNNNNNGC	3 cut(s)	87, 96, 323
BstNI	CCWGG	2 cut(s)	72, 463
BstNSI	RCATGY	1 cut(s)	498
BstSCI	CCNGG	2 cut(s)	70, 461
BstUI	CGCG	1 cut(s)	97
BstV1I	GCAGC	2 cut(s)	77, 310
BstX2I	RGATCY	4 cut(s)	231, 389, 445, 457
BstYI	RGATCY	4 cut(s)	231, 389, 445, 457
BsuRI	GGCC	1 cut(s)	75
BtsI	GCAGTG	1 cut(s)	168
BtsIMutI	CAGTG	3 cut(s)	168, 325, 534
Cac8I	GCNNGC	2 cut(s)	95, 181
CciI	TCATGA	2 cut(s)	52, 160
CfoI	GCGC	1 cut(s)	99
Cfr13I	GGNCC	1 cut(s)	260
CseI	GACGC	1 cut(s)	173
Csp6I	GTAC	3 cut(s)	238, 421, 471
CspCI	CAANNNNNGTGG	2 cut(s)	157, 192
CviAII	CATG	6 cut(s)	53, 64, 119, 161, 215, 495
CviJI	RGCY	7 cut(s)	31, 75, 183, 219, 271, 289, 373
CviKI_1	RGCY	7 cut(s)	31, 75, 183, 219, 271, 289, 373
CviQI	GTAC	3 cut(s)	238, 421, 471
DdeI	CTNAG	6 cut(s)	32, 184, 203, 280, 618, 632
DpnI	GATC	5 cut(s)	57, 233, 391, 447, 459
DpnII	GATC	5 cut(s)	55, 231, 389, 445, 457
Eam1104I	CTCTTC	1 cut(s)	591
EarI	CTCTTC	1 cut(s)	591
Eco147I	AGGCCT	1 cut(s)	75
Eco47I	GGWCC	1 cut(s)	260
Eco57I	CTGAAG	1 cut(s)	227
EcoRII	CCWGG	2 cut(s)	70, 461
FaeI	CATG	6 cut(s)	56, 67, 122, 164, 218, 498
FalI	AAGNNNNNCTT	4 cut(s)	341, 373, 393, 425
FaqI	GGGAC	1 cut(s)	19
FatI	CATG	6 cut(s)	52, 63, 118, 160, 214, 494
FauI	CCCGC	2 cut(s)	102, 620
Fnu4HI	GCNGC	2 cut(s)	91, 324
Fsp4HI	GCNGC	2 cut(s)	91, 324
GlaI	GCGC	1 cut(s)	98
GluI	GCNGC	2 cut(s)	91, 324
HaeIII	GGCC	1 cut(s)	75
HgaI	GACGC	1 cut(s)	173
HhaI	GCGC	1 cut(s)	99
Hin1I	GRCGYC	1 cut(s)	165
Hin1II	CATG	6 cut(s)	56, 67, 122, 164, 218, 498
Hin6I	GCGC	1 cut(s)	97
HinP1I	GCGC	1 cut(s)	97
HinfI	GANTC	5 cut(s)	43, 122, 247, 599, 630
HphI	GGTGA	1 cut(s)	146
Hpy188I	TCNGA	3 cut(s)	246, 394, 635
Hpy188III	TCNNGA	4 cut(s)	53, 126, 161, 451
HpyAV	CCTTC	1 cut(s)	251
HpyCH4III	ACNGT	4 cut(s)	306, 385, 425, 529
HpyCH4V	TGCA	4 cut(s)	49, 209, 326, 503
HpyF10VI	GCNNNNNNNGC	3 cut(s)	87, 96, 323
HpyF3I	CTNAG	6 cut(s)	32, 184, 203, 280, 618, 632
Hsp92I	GRCGYC	1 cut(s)	165
Hsp92II	CATG	6 cut(s)	56, 67, 122, 164, 218, 498
HspAI	GCGC	1 cut(s)	97
Kzo9I	GATC	5 cut(s)	55, 231, 389, 445, 457
LpnPI	CCDG	9 cut(s)	57, 84, 165, 165, 171, 213, 331, 448, 475
Lsp1109I	GCAGC	2 cut(s)	77, 310
LweI	GCATC	1 cut(s)	58
MaeIII	GTNAC	3 cut(s)	425, 490, 529
MalI	GATC	5 cut(s)	57, 233, 391, 447, 459
MbiI	CCGCTC	1 cut(s)	615
MboI	GATC	5 cut(s)	55, 231, 389, 445, 457
MboII	GAAGA	4 cut(s)	149, 364, 455, 608
MflI	RGATCY	4 cut(s)	231, 389, 445, 457
MluCI	AATT	2 cut(s)	210, 481
MlyI	GAGTC	2 cut(s)	608, 624
MnlI	CCTC	9 cut(s)	7, 86, 96, 303, 306, 326, 433, 559, 568
MseI	TTAA	2 cut(s)	254, 345
MspR9I	CCNGG	2 cut(s)	72, 463
Mva1269I	GAATGC	1 cut(s)	204
MvaI	CCWGG	2 cut(s)	72, 463
MvnI	CGCG	1 cut(s)	97
MwoI	GCNNNNNNNGC	3 cut(s)	87, 96, 323
NdeII	GATC	5 cut(s)	55, 231, 389, 445, 457
NlaIII	CATG	6 cut(s)	56, 67, 122, 164, 218, 498
NlaIV	GGNNCC	3 cut(s)	82, 233, 316
NmeAIII	GCCGAG	1 cut(s)	57
NmuCI	GTSAC	2 cut(s)	425, 529
NspI	RCATGY	1 cut(s)	498
PagI	TCATGA	2 cut(s)	52, 160
PceI	AGGCCT	1 cut(s)	75
PciI	ACATGT	1 cut(s)	494
PctI	GAATGC	1 cut(s)	204
PfeI	GAWTC	3 cut(s)	43, 122, 247
PkrI	GCNGC	2 cut(s)	92, 325
PleI	GAGTC	2 cut(s)	607, 624
PpsI	GAGTC	2 cut(s)	607, 624
PscI	ACATGT	1 cut(s)	494
Psp6I	CCWGG	2 cut(s)	70, 461
PspGI	CCWGG	2 cut(s)	70, 461
PspN4I	GGNNCC	3 cut(s)	82, 233, 316
PspPI	GGNCC	1 cut(s)	260
PsuI	RGATCY	4 cut(s)	231, 389, 445, 457
RsaI	GTAC	3 cut(s)	239, 422, 472
RsaNI	GTAC	3 cut(s)	238, 421, 471
SaqAI	TTAA	2 cut(s)	254, 345
SatI	GCNGC	2 cut(s)	91, 324
Sau3AI	GATC	5 cut(s)	55, 231, 389, 445, 457
Sau96I	GGNCC	1 cut(s)	260
SchI	GAGTC	2 cut(s)	608, 624
ScrFI	CCNGG	2 cut(s)	72, 463
SetI	ASST	6 cut(s)	18, 33, 190, 243, 435, 551
SfaNI	GCATC	1 cut(s)	58
SinI	GGWCC	1 cut(s)	260
SmlI	CTYRAG	1 cut(s)	550
SmoI	CTYRAG	1 cut(s)	550
Sse9I	AATT	2 cut(s)	210, 481
SseBI	AGGCCT	1 cut(s)	75
SsiI	CCGC	2 cut(s)	95, 613
StuI	AGGCCT	1 cut(s)	75
StyD4I	CCNGG	2 cut(s)	70, 461
TaaI	ACNGT	4 cut(s)	306, 385, 425, 529
TaqI	TCGA	2 cut(s)	452, 586
TasI	AATT	2 cut(s)	210, 481
TfiI	GAWTC	3 cut(s)	43, 122, 247
Tru1I	TTAA	2 cut(s)	254, 345
Tru9I	TTAA	2 cut(s)	254, 345
TscAI	CASTG	3 cut(s)	175, 325, 534
TseFI	GTSAC	2 cut(s)	425, 529
TseI	GCWGC	2 cut(s)	90, 323
Tsp45I	GTSAC	2 cut(s)	425, 529
TspDTI	ATGAA	4 cut(s)	36, 80, 149, 203
TspRI	CASTG	3 cut(s)	175, 325, 534
VpaK11BI	GGWCC	1 cut(s)	260
XapI	RAATTY	1 cut(s)	481
XceI	RCATGY	1 cut(s)	498

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.