Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4C

Orthogroup ID

OG0003219

Physical Location & Seq

Genomic Coordinates Forward (+)

1605408 .. 1611668

Gene Structure 6261 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4CG009300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 351 bp

ATGGGGACGAGAGAGGTGTATGAACAGAAGCTAAGGAGTGGGAATCTGCATCATGATCCTACCATGAAACCAGGCCTCGGCACCCCTCGCTGCCCGCGCTGTCTCTCTCTCCTTGACCATGATTCGGGAAAGGGTGAATGGACCATCACTCCTGTTCTTCATGACGCCACTGCTGTTGCTGGCTCAGGTATTGGTGGAATGCTTAGTGCAATTCATGGCTTCAATACAGGGATCCCGTACCTTCAGAATCGCTTAAAAGGACCAAAGTGGCTTCCTTTCTTAGTTGGGGTAGATCTCATATGCGTCTTTTCTTTTGGCATCCCAGTTTCCATAACCTACAATGCACACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

116

Amino Acids

12.55

Weight (kDa)

8.54

Isoelectric Point (pI)

13.84

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0003219)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G41945 AT2G41945 AT2G41945
fragaria_vesca	FvH4_6g21750 FvH4_6g21750 FvH4_6g21750 FvH4_6g21750 FvH4_6g21750 FvH4_6g21750
malus_domestica	MD03G1221500.v1.1 MD11G1239000.v1.1
prunus_persica	Prupe.7G082900_v2.0.a1 Prupe.7G082900_v2.0.a1
pyrus_communis	pycom11g21050
rosa_chinensis	RchiOBHm_Chr3g0479091
rosa_laevigata	RLG00000023608
rosa_multiflora	Rmu_sc0005645.1_g000017 Rmu_sc0005992.1_g000001
rosa_roxburghii	Rroxscaffold_6G00402740
rosa_rugosa	Rorug03G0170500 Rorug03G0170600 Rorug03G0170700 Rorug03G0170700 Rorug03G0170800 Rorug03G0170900 Rorug03G0304400 Rorug03G0304500 Rorug03G0304600 Rorug03G0304700
rosa_samantha	Rh3AG221800 Rh3BG254300 Rh3DG246500 Rh4AG008600 Rh4CG009300 Rh4CG009700 Rh4CG009800
rosa_wichuraiana	Rw3G019910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	80
AccII	CGCG	1 cut(s)	97
AciI	CCGC	1 cut(s)	95
AclWI	GGATC	3 cut(s)	50, 226, 239
AcuI	CTGAAG	1 cut(s)	227
AcyI	GRCGYC	1 cut(s)	165
AfaI	GTAC	1 cut(s)	239
AfiI	CCNNNNNNNGG	2 cut(s)	77, 124
AgsI	TTSAA	1 cut(s)	223
AjnI	CCWGG	1 cut(s)	70
AluBI	AGCT	1 cut(s)	31
AluI	AGCT	1 cut(s)	31
Alw26I	GTCTC	1 cut(s)	107
AlwI	GGATC	3 cut(s)	50, 226, 239
AoxI	GGCC	1 cut(s)	73
ApeKI	GCWGC	1 cut(s)	90
AspLEI	GCGC	1 cut(s)	99
AspS9I	GGNCC	2 cut(s)	141, 260
AsuHPI	GGTGA	1 cut(s)	146
AvaII	GGWCC	2 cut(s)	141, 260
BamHI	GGATCC	1 cut(s)	231
BanI	GGYRCC	1 cut(s)	80
BbvI	GCAGC	1 cut(s)	77
BccI	CCATC	1 cut(s)	152
BciT130I	CCWGG	1 cut(s)	72
BcoDI	GTCTC	1 cut(s)	107
BglII	AGATCT	1 cut(s)	292
BisI	GCNGC	1 cut(s)	91
BlsI	GCNGC	1 cut(s)	92
Bme1390I	CCNGG	1 cut(s)	72
Bme18I	GGWCC	2 cut(s)	141, 260
BmgT120I	GGNCC	2 cut(s)	141, 260
BmiI	GGNNCC	2 cut(s)	82, 233
BmrFI	CCNGG	1 cut(s)	72
BmrI	ACTGGG	1 cut(s)	317
BmsI	GCATC	2 cut(s)	58, 327
BmuI	ACTGGG	1 cut(s)	317
Bpu10I	CCTNAGC	2 cut(s)	32, 184
BsaHI	GRCGYC	1 cut(s)	165
BsaJI	CCNNGG	1 cut(s)	76
BsaXI	ACNNNNNCTCC	2 cut(s)	133, 163
Bsc4I	CCNNNNNNNGG	2 cut(s)	77, 124
Bse1I	ACTGG	1 cut(s)	323
BseBI	CCWGG	1 cut(s)	72
BseDI	CCNNGG	1 cut(s)	76
BseGI	GGATG	1 cut(s)	318
BseLI	CCNNNNNNNGG	2 cut(s)	77, 124
BseMII	CTCAG	1 cut(s)	198
BseNI	ACTGG	1 cut(s)	323
BseXI	GCAGC	1 cut(s)	77
Bsh1236I	CGCG	1 cut(s)	97
BshFI	GGCC	1 cut(s)	75
BshNI	GGYRCC	1 cut(s)	80
BslFI	GGGAC	1 cut(s)	19
BslI	CCNNNNNNNGG	2 cut(s)	77, 124
BsmAI	GTCTC	1 cut(s)	107
BsmFI	GGGAC	1 cut(s)	19
BsmI	GAATGC	1 cut(s)	204
BsnI	GGCC	1 cut(s)	75
Bsp143I	GATC	3 cut(s)	55, 231, 292
BspACI	CCGC	1 cut(s)	95
BspANI	GGCC	1 cut(s)	75
BspCNI	CTCAG	1 cut(s)	197
BspFNI	CGCG	1 cut(s)	97
BspHI	TCATGA	2 cut(s)	52, 160
BspLI	GGNNCC	2 cut(s)	82, 233
BspPI	GGATC	3 cut(s)	50, 226, 239
BspT107I	GGYRCC	1 cut(s)	80
BsrI	ACTGG	1 cut(s)	323
BssECI	CCNNGG	1 cut(s)	76
BssMI	GATC	3 cut(s)	55, 231, 292
BssNI	GRCGYC	1 cut(s)	165
Bst2UI	CCWGG	1 cut(s)	72
BstACI	GRCGYC	1 cut(s)	165
BstC8I	GCNNGC	2 cut(s)	95, 181
BstDEI	CTNAG	4 cut(s)	32, 184, 203, 280
BstF5I	GGATG	1 cut(s)	318
BstFNI	CGCG	1 cut(s)	97
BstHHI	GCGC	1 cut(s)	99
BstKTI	GATC	3 cut(s)	58, 234, 295
BstMAI	GTCTC	1 cut(s)	107
BstMBI	GATC	3 cut(s)	55, 231, 292
BstMWI	GCNNNNNNNGC	2 cut(s)	87, 96
BstNI	CCWGG	1 cut(s)	72
BstSCI	CCNGG	1 cut(s)	70
BstUI	CGCG	1 cut(s)	97
BstV1I	GCAGC	1 cut(s)	77
BstX2I	RGATCY	2 cut(s)	231, 292
BstYI	RGATCY	2 cut(s)	231, 292
BsuRI	GGCC	1 cut(s)	75
BtsCI	GGATG	1 cut(s)	318
BtsI	GCAGTG	1 cut(s)	168
BtsIMutI	CAGTG	2 cut(s)	168, 346
Cac8I	GCNNGC	2 cut(s)	95, 181
CciI	TCATGA	2 cut(s)	52, 160
CfoI	GCGC	1 cut(s)	99
Cfr13I	GGNCC	2 cut(s)	141, 260
CseI	GACGC	2 cut(s)	173, 292
Csp6I	GTAC	1 cut(s)	238
CspCI	CAANNNNNGTGG	2 cut(s)	157, 192
CviAII	CATG	5 cut(s)	53, 64, 119, 161, 215
CviJI	RGCY	5 cut(s)	31, 75, 183, 219, 271
CviKI_1	RGCY	5 cut(s)	31, 75, 183, 219, 271
CviQI	GTAC	1 cut(s)	238
DdeI	CTNAG	4 cut(s)	32, 184, 203, 280
DpnI	GATC	3 cut(s)	57, 233, 294
DpnII	GATC	3 cut(s)	55, 231, 292
Eco147I	AGGCCT	1 cut(s)	75
Eco47I	GGWCC	2 cut(s)	141, 260
Eco57I	CTGAAG	1 cut(s)	227
EcoRII	CCWGG	1 cut(s)	70
FaeI	CATG	5 cut(s)	56, 67, 122, 164, 218
FaiI	YATR	9 cut(s)	21, 54, 65, 120, 162, 216, 299, 301, 332
FaqI	GGGAC	1 cut(s)	19
FatI	CATG	5 cut(s)	52, 63, 118, 160, 214
FauI	CCCGC	1 cut(s)	102
FauNDI	CATATG	1 cut(s)	299
Fnu4HI	GCNGC	1 cut(s)	91
FokI	GGATG	1 cut(s)	305
Fsp4HI	GCNGC	1 cut(s)	91
GlaI	GCGC	1 cut(s)	98
GluI	GCNGC	1 cut(s)	91
HaeIII	GGCC	1 cut(s)	75
HgaI	GACGC	2 cut(s)	173, 292
HhaI	GCGC	1 cut(s)	99
Hin1I	GRCGYC	1 cut(s)	165
Hin1II	CATG	5 cut(s)	56, 67, 122, 164, 218
Hin6I	GCGC	1 cut(s)	97
HinP1I	GCGC	1 cut(s)	97
HinfI	GANTC	3 cut(s)	43, 122, 247
HphI	GGTGA	1 cut(s)	146
Hpy188I	TCNGA	1 cut(s)	246
Hpy188III	TCNNGA	3 cut(s)	53, 126, 161
HpyAV	CCTTC	1 cut(s)	251
HpyCH4V	TGCA	3 cut(s)	49, 209, 344
HpyF10VI	GCNNNNNNNGC	2 cut(s)	87, 96
HpyF3I	CTNAG	4 cut(s)	32, 184, 203, 280
Hsp92I	GRCGYC	1 cut(s)	165
Hsp92II	CATG	5 cut(s)	56, 67, 122, 164, 218
HspAI	GCGC	1 cut(s)	97
Kzo9I	GATC	3 cut(s)	55, 231, 292
LpnPI	CCDG	7 cut(s)	57, 84, 165, 165, 171, 213, 336
Lsp1109I	GCAGC	1 cut(s)	77
LweI	GCATC	2 cut(s)	58, 327
MalI	GATC	3 cut(s)	57, 233, 294
MboI	GATC	3 cut(s)	55, 231, 292
MboII	GAAGA	1 cut(s)	149
MflI	RGATCY	2 cut(s)	231, 292
MluCI	AATT	1 cut(s)	210
MnlI	CCTC	3 cut(s)	7, 86, 96
MseI	TTAA	1 cut(s)	254
MspR9I	CCNGG	1 cut(s)	72
Mva1269I	GAATGC	1 cut(s)	204
MvaI	CCWGG	1 cut(s)	72
MvnI	CGCG	1 cut(s)	97
MwoI	GCNNNNNNNGC	2 cut(s)	87, 96
NdeI	CATATG	1 cut(s)	299
NdeII	GATC	3 cut(s)	55, 231, 292
NlaIII	CATG	5 cut(s)	56, 67, 122, 164, 218
NlaIV	GGNNCC	2 cut(s)	82, 233
NmeAIII	GCCGAG	1 cut(s)	57
PagI	TCATGA	2 cut(s)	52, 160
PceI	AGGCCT	1 cut(s)	75
PctI	GAATGC	1 cut(s)	204
PfeI	GAWTC	3 cut(s)	43, 122, 247
PkrI	GCNGC	1 cut(s)	92
Psp6I	CCWGG	1 cut(s)	70
PspGI	CCWGG	1 cut(s)	70
PspN4I	GGNNCC	2 cut(s)	82, 233
PspPI	GGNCC	2 cut(s)	141, 260
PsuI	RGATCY	2 cut(s)	231, 292
RsaI	GTAC	1 cut(s)	239
RsaNI	GTAC	1 cut(s)	238
SaqAI	TTAA	1 cut(s)	254
SatI	GCNGC	1 cut(s)	91
Sau3AI	GATC	3 cut(s)	55, 231, 292
Sau96I	GGNCC	2 cut(s)	141, 260
ScrFI	CCNGG	1 cut(s)	72
SetI	ASST	5 cut(s)	18, 33, 190, 243, 338
SfaNI	GCATC	2 cut(s)	58, 327
SinI	GGWCC	2 cut(s)	141, 260
Sse9I	AATT	1 cut(s)	210
SseBI	AGGCCT	1 cut(s)	75
SsiI	CCGC	1 cut(s)	95
StuI	AGGCCT	1 cut(s)	75
StyD4I	CCNGG	1 cut(s)	70
TasI	AATT	1 cut(s)	210
TfiI	GAWTC	3 cut(s)	43, 122, 247
Tru1I	TTAA	1 cut(s)	254
Tru9I	TTAA	1 cut(s)	254
TscAI	CASTG	1 cut(s)	175
TseI	GCWGC	1 cut(s)	90
TspDTI	ATGAA	4 cut(s)	36, 80, 149, 203
TspRI	CASTG	1 cut(s)	175
VpaK11BI	GGWCC	2 cut(s)	141, 260

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.